Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGAAATTTCTGCTGAAAGAGTTGCACCTGCTATGGCTGAGTTTAGAGAAGACGGTGATATTTCTTCAGCTGTGACACAGAAAACTGCAAATGAAGCCTTTGCACCTGCAAGACAACAAACTACATCTGAAGTGATAGTGGGTTCTCCCCTCAACAGAAGTTCTAATTTGAAAACTTCGGACGACACCACCTATGATGCAAAGGATTCCAGCTTTACTTTTCAAAATGCATCTTCACTTTGCACGACATCACAAGAGGAAACTATTGATGATTCTGCTCCCACCCATTCTGTTGAAGATAAGGATCTTCCAGAAAACAAGCAAAGTGATCCTTCAGTTTTTAGCTATGGAAATAATGTTTCTCCACGAAAGCAACCAAATGCTTGTTCTACCTTACTTGATGTTGGAAATAAGGTTGCTTCTCTGACAGAATCACGTGCTGCTTCTGAAAATGGTAATAAGGCTCCATAC
mRNA sequence
GATGAAATTTCTGCTGAAAGAGTTGCACCTGCTATGGCTGAGTTTAGAGAAGACGGTGATATTTCTTCAGCTGTGACACAGAAAACTGCAAATGAAGCCTTTGCACCTGCAAGACAACAAACTACATCTGAAGTGATAGTGGGTTCTCCCCTCAACAGAAGTTCTAATTTGAAAACTTCGGACGACACCACCTATGATGCAAAGGATTCCAGCTTTACTTTTCAAAATGCATCTTCACTTTGCACGACATCACAAGAGGAAACTATTGATGATTCTGCTCCCACCCATTCTGTTGAAGATAAGGATCTTCCAGAAAACAAGCAAAGTGATCCTTCAGTTTTTAGCTATGGAAATAATGTTTCTCCACGAAAGCAACCAAATGCTTGTTCTACCTTACTTGATGTTGGAAATAAGGTTGCTTCTCTGACAGAATCACGTGCTGCTTCTGAAAATGGTAATAAGGCTCCATAC
Coding sequence (CDS)
GATGAAATTTCTGCTGAAAGAGTTGCACCTGCTATGGCTGAGTTTAGAGAAGACGGTGATATTTCTTCAGCTGTGACACAGAAAACTGCAAATGAAGCCTTTGCACCTGCAAGACAACAAACTACATCTGAAGTGATAGTGGGTTCTCCCCTCAACAGAAGTTCTAATTTGAAAACTTCGGACGACACCACCTATGATGCAAAGGATTCCAGCTTTACTTTTCAAAATGCATCTTCACTTTGCACGACATCACAAGAGGAAACTATTGATGATTCTGCTCCCACCCATTCTGTTGAAGATAAGGATCTTCCAGAAAACAAGCAAAGTGATCCTTCAGTTTTTAGCTATGGAAATAATGTTTCTCCACGAAAGCAACCAAATGCTTGTTCTACCTTACTTGATGTTGGAAATAAGGTTGCTTCTCTGACAGAATCACGTGCTGCTTCTGAAAATGGTAATAAGGCTCCATAC
Protein sequence
DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTSDDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSDPSVFSYGNNVSPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY
Homology
BLAST of MS004132 vs. NCBI nr
Match:
KAG6601239.1 (Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 166.8 bits (421), Expect = 1.5e-37
Identity = 104/157 (66.24%), Postives = 117/157 (74.52%), Query Frame = 0
Query: 1 DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTS 60
DE S +RVAPA AE RE GDIS AV Q TANEA AP++ QT SEVIVGSPLNRSS+LKTS
Sbjct: 507 DESSPDRVAPATAEDRE-GDISLAVRQTTANEALAPSKPQTASEVIVGSPLNRSSDLKTS 566
Query: 61 DDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSDPSVFSYGNNV 120
+ + +D D+SFTFQ A SQ ETI DSAPT+S + DLPE K+ D VFS+GNNV
Sbjct: 567 EGSVHDDMDTSFTFQIA-----PSQPETI-DSAPTNSFGNNDLPEKKRIDSPVFSFGNNV 626
Query: 121 SPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY 158
SPRKQPNA ST DVGNK AS TE AA ENGN AP+
Sbjct: 627 SPRKQPNASSTAFDVGNKDASRTELCAAPENGNGAPF 656
BLAST of MS004132 vs. NCBI nr
Match:
KAG7032030.1 (Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 165.6 bits (418), Expect = 3.4e-37
Identity = 103/157 (65.61%), Postives = 117/157 (74.52%), Query Frame = 0
Query: 1 DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTS 60
DE S +RVAPA AE RE GDIS A+ Q TANEA AP++ QT SEVIVGSPLNRSS+LKTS
Sbjct: 529 DESSPDRVAPATAEDRE-GDISLALRQTTANEALAPSKPQTASEVIVGSPLNRSSDLKTS 588
Query: 61 DDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSDPSVFSYGNNV 120
+ + +D D+SFTFQ A SQ ETI DSAPT+S + DLPE K+ D VFS+GNNV
Sbjct: 589 EGSVHDDMDTSFTFQIA-----PSQPETI-DSAPTNSFGNNDLPEKKRIDSPVFSFGNNV 648
Query: 121 SPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY 158
SPRKQPNA ST DVGNK AS TE AA ENGN AP+
Sbjct: 649 SPRKQPNASSTAFDVGNKDASRTELCAAPENGNGAPF 678
BLAST of MS004132 vs. NCBI nr
Match:
XP_022956529.1 (nuclear pore complex protein NUP1-like isoform X2 [Cucurbita moschata])
HSP 1 Score: 165.2 bits (417), Expect = 4.4e-37
Identity = 103/157 (65.61%), Postives = 116/157 (73.89%), Query Frame = 0
Query: 1 DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTS 60
DE S +RVAPA AE RE GDIS AV Q TANE AP++ QT SEVIVGSPLNRSS+LKTS
Sbjct: 522 DESSPDRVAPATAEDRE-GDISLAVRQTTANETLAPSKPQTASEVIVGSPLNRSSDLKTS 581
Query: 61 DDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSDPSVFSYGNNV 120
+ + +D D+SFTFQ A SQ ETI DSAPT+S + DLPE K+ D VFS+GNNV
Sbjct: 582 EGSVHDDMDTSFTFQIA-----PSQPETI-DSAPTNSFGNNDLPEKKRIDSPVFSFGNNV 641
Query: 121 SPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY 158
SPRKQPNA ST DVGNK AS TE AA ENGN AP+
Sbjct: 642 SPRKQPNASSTAFDVGNKDASRTELCAAPENGNGAPF 671
BLAST of MS004132 vs. NCBI nr
Match:
XP_022956526.1 (nuclear pore complex protein NUP1-like isoform X1 [Cucurbita moschata] >XP_022956527.1 nuclear pore complex protein NUP1-like isoform X1 [Cucurbita moschata] >XP_022956528.1 nuclear pore complex protein NUP1-like isoform X1 [Cucurbita moschata])
HSP 1 Score: 165.2 bits (417), Expect = 4.4e-37
Identity = 103/157 (65.61%), Postives = 116/157 (73.89%), Query Frame = 0
Query: 1 DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTS 60
DE S +RVAPA AE RE GDIS AV Q TANE AP++ QT SEVIVGSPLNRSS+LKTS
Sbjct: 528 DESSPDRVAPATAEDRE-GDISLAVRQTTANETLAPSKPQTASEVIVGSPLNRSSDLKTS 587
Query: 61 DDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSDPSVFSYGNNV 120
+ + +D D+SFTFQ A SQ ETI DSAPT+S + DLPE K+ D VFS+GNNV
Sbjct: 588 EGSVHDDMDTSFTFQIA-----PSQPETI-DSAPTNSFGNNDLPEKKRIDSPVFSFGNNV 647
Query: 121 SPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY 158
SPRKQPNA ST DVGNK AS TE AA ENGN AP+
Sbjct: 648 SPRKQPNASSTAFDVGNKDASRTELCAAPENGNGAPF 677
BLAST of MS004132 vs. NCBI nr
Match:
XP_023528164.1 (nuclear pore complex protein NUP1-like isoform X3 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 164.9 bits (416), Expect = 5.8e-37
Identity = 102/157 (64.97%), Postives = 116/157 (73.89%), Query Frame = 0
Query: 1 DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTS 60
DE S +R+APA AE RE GDIS AV Q TANEA P++ QT SEVIV SPLNRSS+LKTS
Sbjct: 402 DESSPDRIAPATAEDRE-GDISLAVRQTTANEALTPSKSQTASEVIVDSPLNRSSDLKTS 461
Query: 61 DDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSDPSVFSYGNNV 120
+ + +D D+SFTFQ A SQ ETI DSAPT+S + DLPE K+ D VFS+GNNV
Sbjct: 462 EGSVHDDMDTSFTFQIA-----PSQPETI-DSAPTNSYGNNDLPEKKRIDSPVFSFGNNV 521
Query: 121 SPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY 158
SPRKQPNA ST DVGNK AS TE AASENGN AP+
Sbjct: 522 SPRKQPNASSTAFDVGNKNASRTELCAASENGNAAPF 551
BLAST of MS004132 vs. ExPASy TrEMBL
Match:
A0A6J1GWT8 (nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111458242 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 2.1e-37
Identity = 103/157 (65.61%), Postives = 116/157 (73.89%), Query Frame = 0
Query: 1 DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTS 60
DE S +RVAPA AE RE GDIS AV Q TANE AP++ QT SEVIVGSPLNRSS+LKTS
Sbjct: 528 DESSPDRVAPATAEDRE-GDISLAVRQTTANETLAPSKPQTASEVIVGSPLNRSSDLKTS 587
Query: 61 DDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSDPSVFSYGNNV 120
+ + +D D+SFTFQ A SQ ETI DSAPT+S + DLPE K+ D VFS+GNNV
Sbjct: 588 EGSVHDDMDTSFTFQIA-----PSQPETI-DSAPTNSFGNNDLPEKKRIDSPVFSFGNNV 647
Query: 121 SPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY 158
SPRKQPNA ST DVGNK AS TE AA ENGN AP+
Sbjct: 648 SPRKQPNASSTAFDVGNKDASRTELCAAPENGNGAPF 677
BLAST of MS004132 vs. ExPASy TrEMBL
Match:
A0A6J1GZB0 (nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111458242 PE=4 SV=1)
HSP 1 Score: 165.2 bits (417), Expect = 2.1e-37
Identity = 103/157 (65.61%), Postives = 116/157 (73.89%), Query Frame = 0
Query: 1 DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTS 60
DE S +RVAPA AE RE GDIS AV Q TANE AP++ QT SEVIVGSPLNRSS+LKTS
Sbjct: 522 DESSPDRVAPATAEDRE-GDISLAVRQTTANETLAPSKPQTASEVIVGSPLNRSSDLKTS 581
Query: 61 DDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSDPSVFSYGNNV 120
+ + +D D+SFTFQ A SQ ETI DSAPT+S + DLPE K+ D VFS+GNNV
Sbjct: 582 EGSVHDDMDTSFTFQIA-----PSQPETI-DSAPTNSFGNNDLPEKKRIDSPVFSFGNNV 641
Query: 121 SPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY 158
SPRKQPNA ST DVGNK AS TE AA ENGN AP+
Sbjct: 642 SPRKQPNASSTAFDVGNKDASRTELCAAPENGNGAPF 671
BLAST of MS004132 vs. ExPASy TrEMBL
Match:
A0A6J1K2T4 (nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111490466 PE=4 SV=1)
HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 102/157 (64.97%), Postives = 117/157 (74.52%), Query Frame = 0
Query: 1 DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTS 60
DE S +RVAPA AE RE GDIS AV Q TA+E+ AP++ QT SEVIVGSPLNRSS+LKTS
Sbjct: 528 DESSPDRVAPATAEDRE-GDISLAVRQTTASESLAPSKPQTASEVIVGSPLNRSSDLKTS 587
Query: 61 DDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSDPSVFSYGNNV 120
+ + +D D+SFTFQ A SQ ETI DSAPT+S + DLPENK+ D VFS+GNNV
Sbjct: 588 EGSVHDDMDTSFTFQIA-----PSQPETI-DSAPTNSFGNNDLPENKRIDSPVFSFGNNV 647
Query: 121 SPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY 158
SPRKQPNA ST D GNK AS TE AASENGN A +
Sbjct: 648 SPRKQPNASSTAFDFGNKDASRTELCAASENGNGASF 677
BLAST of MS004132 vs. ExPASy TrEMBL
Match:
A0A6J1KDW6 (nuclear pore complex protein NUP1-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111490466 PE=4 SV=1)
HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 102/157 (64.97%), Postives = 117/157 (74.52%), Query Frame = 0
Query: 1 DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTS 60
DE S +RVAPA AE RE GDIS AV Q TA+E+ AP++ QT SEVIVGSPLNRSS+LKTS
Sbjct: 402 DESSPDRVAPATAEDRE-GDISLAVRQTTASESLAPSKPQTASEVIVGSPLNRSSDLKTS 461
Query: 61 DDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSDPSVFSYGNNV 120
+ + +D D+SFTFQ A SQ ETI DSAPT+S + DLPENK+ D VFS+GNNV
Sbjct: 462 EGSVHDDMDTSFTFQIA-----PSQPETI-DSAPTNSFGNNDLPENKRIDSPVFSFGNNV 521
Query: 121 SPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY 158
SPRKQPNA ST D GNK AS TE AASENGN A +
Sbjct: 522 SPRKQPNASSTAFDFGNKDASRTELCAASENGNGASF 551
BLAST of MS004132 vs. ExPASy TrEMBL
Match:
A0A6J1KBI9 (nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111490466 PE=4 SV=1)
HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 102/157 (64.97%), Postives = 117/157 (74.52%), Query Frame = 0
Query: 1 DEISAERVAPAMAEFREDGDISSAVTQKTANEAFAPARQQTTSEVIVGSPLNRSSNLKTS 60
DE S +RVAPA AE RE GDIS AV Q TA+E+ AP++ QT SEVIVGSPLNRSS+LKTS
Sbjct: 522 DESSPDRVAPATAEDRE-GDISLAVRQTTASESLAPSKPQTASEVIVGSPLNRSSDLKTS 581
Query: 61 DDTTYDAKDSSFTFQNASSLCTTSQEETIDDSAPTHSVEDKDLPENKQSDPSVFSYGNNV 120
+ + +D D+SFTFQ A SQ ETI DSAPT+S + DLPENK+ D VFS+GNNV
Sbjct: 582 EGSVHDDMDTSFTFQIA-----PSQPETI-DSAPTNSFGNNDLPENKRIDSPVFSFGNNV 641
Query: 121 SPRKQPNACSTLLDVGNKVASLTESRAASENGNKAPY 158
SPRKQPNA ST D GNK AS TE AASENGN A +
Sbjct: 642 SPRKQPNASSTAFDFGNKDASRTELCAASENGNGASF 671
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAG6601239.1 | 1.5e-37 | 66.24 | Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7032030.1 | 3.4e-37 | 65.61 | Nuclear pore complex protein NUP1, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| XP_022956529.1 | 4.4e-37 | 65.61 | nuclear pore complex protein NUP1-like isoform X2 [Cucurbita moschata] | [more] |
| XP_022956526.1 | 4.4e-37 | 65.61 | nuclear pore complex protein NUP1-like isoform X1 [Cucurbita moschata] >XP_02295... | [more] |
| XP_023528164.1 | 5.8e-37 | 64.97 | nuclear pore complex protein NUP1-like isoform X3 [Cucurbita pepo subsp. pepo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1GWT8 | 2.1e-37 | 65.61 | nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita moschata OX=3662 ... | [more] |
| A0A6J1GZB0 | 2.1e-37 | 65.61 | nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita moschata OX=3662 ... | [more] |
| A0A6J1K2T4 | 1.1e-36 | 64.97 | nuclear pore complex protein NUP1-like isoform X1 OS=Cucurbita maxima OX=3661 GN... | [more] |
| A0A6J1KDW6 | 1.1e-36 | 64.97 | nuclear pore complex protein NUP1-like isoform X3 OS=Cucurbita maxima OX=3661 GN... | [more] |
| A0A6J1KBI9 | 1.1e-36 | 64.97 | nuclear pore complex protein NUP1-like isoform X2 OS=Cucurbita maxima OX=3661 GN... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
