MS003975 (gene) Bitter gourd (TR) v1

Overview
NameMS003975
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLYR motif-containing protein 4
Locationscaffold1597: 247200 .. 247463 (+)
RNA-Seq ExpressionMS003975
SyntenyMS003975
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACCCCGTCGAGGTCTGAAATCCTCTCGCTGTTCCGTTCTCTACTGCGCACGGCGCGTCAATTCTCCGATTACAACATCAGAGAATACACCAAACGCCGCGCCATTGATGCCTTCCGAGAAAATCGGAGTCTTTCCGATCCTTCATCGATCTCTTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGAGGCAGGCCCTTGTTTACTCTCTTTACGCCCCCAAGGTCAAGAGTATCATGGATGTTAAGCTC

mRNA sequence

ATGGCAACCCCGTCGAGGTCTGAAATCCTCTCGCTGTTCCGTTCTCTACTGCGCACGGCGCGTCAATTCTCCGATTACAACATCAGAGAATACACCAAACGCCGCGCCATTGATGCCTTCCGAGAAAATCGGAGTCTTTCCGATCCTTCATCGATCTCTTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGAGGCAGGCCCTTGTTTACTCTCTTTACGCCCCCAAGGTCAAGAGTATCATGGATGTTAAGCTC

Coding sequence (CDS)

ATGGCAACCCCGTCGAGGTCTGAAATCCTCTCGCTGTTCCGTTCTCTACTGCGCACGGCGCGTCAATTCTCCGATTACAACATCAGAGAATACACCAAACGCCGCGCCATTGATGCCTTCCGAGAAAATCGGAGTCTTTCCGATCCTTCATCGATCTCTTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGAGGCAGGCCCTTGTTTACTCTCTTTACGCCCCCAAGGTCAAGAGTATCATGGATGTTAAGCTC

Protein sequence

MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVKL
Homology
BLAST of MS003975 vs. NCBI nr
Match: XP_022137452.1 (LYR motif-containing protein 4 [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 7.2e-37
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVKL 89
          AQLEVAKRQALVYSLYAPKVKSIMDVKL
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVKL 88

BLAST of MS003975 vs. NCBI nr
Match: XP_038894896.1 (LYR motif-containing protein 4 [Benincasa hispida])

HSP 1 Score: 153.3 bits (386), Expect = 9.8e-34
Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MATPSRSE+LSLFRSLLRTARQF DYNIREYTKRR IDAFREN+SLSD SSISSAYAGGK
Sbjct: 1  MATPSRSEVLSLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDASSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVKL 89
          AQLEVAKRQALVYSLYAPKVKSIMDV L
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVNL 88

BLAST of MS003975 vs. NCBI nr
Match: KAG6607477.1 (LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037133.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.0 bits (380), Expect = 4.8e-33
Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MA PSRSEIL+LFRSLLRTARQF DYNIREYTKRR IDAFREN+SLSDPSSISS YAGGK
Sbjct: 1  MAAPSRSEILTLFRSLLRTARQFPDYNIREYTKRRTIDAFRENQSLSDPSSISSVYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDV 87
          AQLEVAKRQALVYSLYAPKVKSIMDV
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDV 86

BLAST of MS003975 vs. NCBI nr
Match: KGN64034.1 (hypothetical protein Csa_014098 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 2.3e-30
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MATPS SEILSLFRSLLRTARQF DYNIREY KRR ID+FREN++LSD SSISS YAGG+
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDV 87
          AQLEVAKRQA+VYSLYAPKVKSIMDV
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSIMDV 86

BLAST of MS003975 vs. NCBI nr
Match: KAF5807263.1 (putative complex 1 LYR protein [Helianthus annuus])

HSP 1 Score: 136.7 bits (343), Expect = 9.5e-29
Identity = 68/87 (78.16%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MATPSRSEIL+LFRSLLR+ARQF DYNIREYTKRR IDAFR N++LS+PSSI++A++ G+
Sbjct: 1  MATPSRSEILTLFRSLLRSARQFPDYNIREYTKRRTIDAFRHNKTLSEPSSIAAAFSDGQ 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVK 88
          +QL+VAKRQA+VYSLYAPK+KSIMD+K
Sbjct: 61 SQLQVAKRQAVVYSLYAPKIKSIMDIK 87

BLAST of MS003975 vs. ExPASy Swiss-Prot
Match: B5FZA8 (LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.2e-11
Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MA  SR+++L L+R+LLR +++FS YN R Y  RR  DAFREN++++D   I       K
Sbjct: 1  MAASSRAQVLRLYRALLRESQRFSSYNYRTYAIRRIRDAFRENKNIADSEKIEELLNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
          A LEV +RQ  +  +YA
Sbjct: 61 ANLEVIQRQGTIDHMYA 77

BLAST of MS003975 vs. ExPASy Swiss-Prot
Match: Q9HD34 (LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 3.5e-10
Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MA  SR+++LSL+R++LR +++FS YN R Y  RR  DAFREN+++ DP  I +     K
Sbjct: 1  MAASSRAQVLSLYRAMLRESKRFSAYNYRTYAVRRIRDAFRENKNVKDPVEIQTLVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            L V +RQ  +  LY+
Sbjct: 61 RDLGVIRRQVHIGQLYS 77

BLAST of MS003975 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 6.0e-10
Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MA  SR+++L L+R+++R ++ FS YN R Y  RR  DAFREN+++ DP  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMMRESKHFSAYNYRMYAVRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            LE+ +RQ  +  LY+
Sbjct: 61 RDLEIIRRQVHIGQLYS 77

BLAST of MS003975 vs. ExPASy Swiss-Prot
Match: Q0VCG0 (LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.6e-09
Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MA  SR+++L L+R++LR +++F  YN R Y  RR  DAFREN+++ DP  I +     K
Sbjct: 1  MAASSRAQVLDLYRAMLRESKRFGAYNYRTYAIRRIRDAFRENKNVKDPVEIQALVNKAK 60

Query: 61 AQLEVAKRQALVYSLYA 78
            L + +RQ  +  +Y+
Sbjct: 61 RDLGIIRRQVHIGQMYS 77

BLAST of MS003975 vs. ExPASy Swiss-Prot
Match: B5XD90 (LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 5.6e-08
Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 0

Query: 7  SEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGKAQLEVA 66
          +++LSL+R L++ + +F  YN R Y  RR  DAFR NRS+ DP  +      G+  L++ 
Sbjct: 6  AQVLSLYRKLMKESNKFPSYNYRTYALRRVQDAFRANRSVEDPKMVEQLLNQGRDNLDMI 65

Query: 67 KRQALVYSLYAPKVKSIMD 86
          +RQ  +  +Y P  K+I++
Sbjct: 66 RRQVAIGKMY-PTQKTIVE 83

BLAST of MS003975 vs. ExPASy TrEMBL
Match: A0A6J1C8A4 (LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK
Sbjct: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVKL 89
          AQLEVAKRQALVYSLYAPKVKSIMDVKL
Sbjct: 61 AQLEVAKRQALVYSLYAPKVKSIMDVKL 88

BLAST of MS003975 vs. ExPASy TrEMBL
Match: A0A0A0LST7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.1e-30
Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MATPS SEILSLFRSLLRTARQF DYNIREY KRR ID+FREN++LSD SSISS YAGG+
Sbjct: 1  MATPSTSEILSLFRSLLRTARQFPDYNIREYIKRRTIDSFRENQTLSDASSISSVYAGGR 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDV 87
          AQLEVAKRQA+VYSLYAPKVKSIMDV
Sbjct: 61 AQLEVAKRQAIVYSLYAPKVKSIMDV 86

BLAST of MS003975 vs. ExPASy TrEMBL
Match: A0A2I4FW34 (LYR motif-containing protein 4-like OS=Juglans regia OX=51240 GN=LOC109002531 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.6e-29
Identity = 69/84 (82.14%), Postives = 79/84 (94.05%), Query Frame = 0

Query: 4  PSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGKAQL 63
          P+RSE+LSLFRSLLRTARQFSDYNIREYTKRR ID FR NR+LSDP SI+SA++ GKAQL
Sbjct: 13 PTRSEVLSLFRSLLRTARQFSDYNIREYTKRRTIDGFRLNRTLSDPDSITSAFSDGKAQL 72

Query: 64 EVAKRQALVYSLYAPKVKSIMDVK 88
          EVAKRQ+++YSLYAPKVKSIMD+K
Sbjct: 73 EVAKRQSIIYSLYAPKVKSIMDLK 96

BLAST of MS003975 vs. ExPASy TrEMBL
Match: A0A251UU63 (Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0157171 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.6e-29
Identity = 68/87 (78.16%), Postives = 83/87 (95.40%), Query Frame = 0

Query: 1  MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGK 60
          MATPSRSEIL+LFRSLLR+ARQF DYNIREYTKRR IDAFR N++LS+PSSI++A++ G+
Sbjct: 1  MATPSRSEILTLFRSLLRSARQFPDYNIREYTKRRTIDAFRHNKTLSEPSSIAAAFSDGQ 60

Query: 61 AQLEVAKRQALVYSLYAPKVKSIMDVK 88
          +QL+VAKRQA+VYSLYAPK+KSIMD+K
Sbjct: 61 SQLQVAKRQAVVYSLYAPKIKSIMDIK 87

BLAST of MS003975 vs. ExPASy TrEMBL
Match: A0A7N2MN47 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28
Identity = 69/84 (82.14%), Postives = 79/84 (94.05%), Query Frame = 0

Query: 4  PSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGKAQL 63
          P+RSE+L LFRSLLRTARQFSDYNIREYTKRR ID FR+NR+LSDP SI+SA++ G+AQL
Sbjct: 6  PTRSEVLFLFRSLLRTARQFSDYNIREYTKRRTIDGFRQNRTLSDPDSIASAFSHGEAQL 65

Query: 64 EVAKRQALVYSLYAPKVKSIMDVK 88
          EVAKRQA+VYSLYAPKVKSIMD+K
Sbjct: 66 EVAKRQAVVYSLYAPKVKSIMDLK 89

BLAST of MS003975 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein )

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-21
Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 0

Query: 5  SRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGKAQLE 64
          S SE+LSL R+LLR  RQF DYNIREY+KRR +D FR N++L+DPS ++ AYA  K QL 
Sbjct: 3  SSSEVLSLCRALLRAGRQFPDYNIREYSKRRTLDGFRMNKNLTDPSKVTEAYAEAKKQLF 62

Query: 65 VAKRQALVYSLYAPKVKSIMDVKL 89
          VA+R   VY  Y PK K+IM+VKL
Sbjct: 63 VAERVLKVYLAYPPKTKNIMEVKL 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022137452.17.2e-37100.00LYR motif-containing protein 4 [Momordica charantia][more]
XP_038894896.19.8e-3493.18LYR motif-containing protein 4 [Benincasa hispida][more]
KAG6607477.14.8e-3393.02LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] ... [more]
KGN64034.12.3e-3087.21hypothetical protein Csa_014098 [Cucumis sativus][more]
KAF5807263.19.5e-2978.16putative complex 1 LYR protein [Helianthus annuus][more]
Match NameE-valueIdentityDescription
B5FZA89.2e-1145.45LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=... [more]
Q9HD343.5e-1044.16LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1[more]
Q8K2156.0e-1041.56LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1[more]
Q0VCG08.6e-0938.96LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1[more]
B5XD905.6e-0836.71LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1C8A43.5e-37100.00LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE... [more]
A0A0A0LST71.1e-3087.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1[more]
A0A2I4FW344.6e-2982.14LYR motif-containing protein 4-like OS=Juglans regia OX=51240 GN=LOC109002531 PE... [more]
A0A251UU634.6e-2978.16Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g015... [more]
A0A7N2MN471.0e-2882.14Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G61220.14.5e-2160.71LYR family of Fe/S cluster biogenesis protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008011Complex 1 LYR proteinPFAMPF05347Complex1_LYRcoord: 8..64
e-value: 6.4E-20
score: 71.0
NoneNo IPR availablePANTHERPTHR47158:SF1OS08G0239000 PROTEINcoord: 1..87
NoneNo IPR availablePANTHERPTHR47158OS08G0239000 PROTEINcoord: 1..87
NoneNo IPR availableCDDcd20264Complex1_LYR_LYRM4coord: 8..76
e-value: 3.26422E-23
score: 82.1821

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003975.1MS003975.1mRNA