MS003975 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCAACCCCGTCGAGGTCTGAAATCCTCTCGCTGTTCCGTTCTCTACTGCGCACGGCGCGTCAATTCTCCGATTACAACATCAGAGAATACACCAAACGCCGCGCCATTGATGCCTTCCGAGAAAATCGGAGTCTTTCCGATCCTTCATCGATCTCTTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGAGGCAGGCCCTTGTTTACTCTCTTTACGCCCCCAAGGTCAAGAGTATCATGGATGTTAAGCTC ATGGCAACCCCGTCGAGGTCTGAAATCCTCTCGCTGTTCCGTTCTCTACTGCGCACGGCGCGTCAATTCTCCGATTACAACATCAGAGAATACACCAAACGCCGCGCCATTGATGCCTTCCGAGAAAATCGGAGTCTTTCCGATCCTTCATCGATCTCTTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGAGGCAGGCCCTTGTTTACTCTCTTTACGCCCCCAAGGTCAAGAGTATCATGGATGTTAAGCTC ATGGCAACCCCGTCGAGGTCTGAAATCCTCTCGCTGTTCCGTTCTCTACTGCGCACGGCGCGTCAATTCTCCGATTACAACATCAGAGAATACACCAAACGCCGCGCCATTGATGCCTTCCGAGAAAATCGGAGTCTTTCCGATCCTTCATCGATCTCTTCCGCCTACGCCGGCGGCAAAGCTCAGCTCGAGGTTGCGAAGAGGCAGGCCCTTGTTTACTCTCTTTACGCCCCCAAGGTCAAGAGTATCATGGATGTTAAGCTC MATPSRSEILSLFRSLLRTARQFSDYNIREYTKRRAIDAFRENRSLSDPSSISSAYAGGKAQLEVAKRQALVYSLYAPKVKSIMDVKL Homology
BLAST of MS003975 vs. NCBI nr
Match: XP_022137452.1 (LYR motif-containing protein 4 [Momordica charantia]) HSP 1 Score: 163.7 bits (413), Expect = 7.2e-37 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of MS003975 vs. NCBI nr
Match: XP_038894896.1 (LYR motif-containing protein 4 [Benincasa hispida]) HSP 1 Score: 153.3 bits (386), Expect = 9.8e-34 Identity = 82/88 (93.18%), Postives = 84/88 (95.45%), Query Frame = 0
BLAST of MS003975 vs. NCBI nr
Match: KAG6607477.1 (LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037133.1 LYR motif-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 151.0 bits (380), Expect = 4.8e-33 Identity = 80/86 (93.02%), Postives = 82/86 (95.35%), Query Frame = 0
BLAST of MS003975 vs. NCBI nr
Match: KGN64034.1 (hypothetical protein Csa_014098 [Cucumis sativus]) HSP 1 Score: 142.1 bits (357), Expect = 2.3e-30 Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 0
BLAST of MS003975 vs. NCBI nr
Match: KAF5807263.1 (putative complex 1 LYR protein [Helianthus annuus]) HSP 1 Score: 136.7 bits (343), Expect = 9.5e-29 Identity = 68/87 (78.16%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of MS003975 vs. ExPASy Swiss-Prot
Match: B5FZA8 (LYR motif-containing protein 4 OS=Taeniopygia guttata OX=59729 GN=LYRM4 PE=3 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 9.2e-11 Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0
BLAST of MS003975 vs. ExPASy Swiss-Prot
Match: Q9HD34 (LYR motif-containing protein 4 OS=Homo sapiens OX=9606 GN=LYRM4 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 3.5e-10 Identity = 34/77 (44.16%), Postives = 50/77 (64.94%), Query Frame = 0
BLAST of MS003975 vs. ExPASy Swiss-Prot
Match: Q8K215 (LYR motif-containing protein 4 OS=Mus musculus OX=10090 GN=Lyrm4 PE=1 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 6.0e-10 Identity = 32/77 (41.56%), Postives = 49/77 (63.64%), Query Frame = 0
BLAST of MS003975 vs. ExPASy Swiss-Prot
Match: Q0VCG0 (LYR motif-containing protein 4 OS=Bos taurus OX=9913 GN=LYRM4 PE=3 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 8.6e-09 Identity = 30/77 (38.96%), Postives = 48/77 (62.34%), Query Frame = 0
BLAST of MS003975 vs. ExPASy Swiss-Prot
Match: B5XD90 (LYR motif-containing protein 4B OS=Salmo salar OX=8030 GN=lyrm4b PE=3 SV=1) HSP 1 Score: 58.2 bits (139), Expect = 5.6e-08 Identity = 29/79 (36.71%), Postives = 48/79 (60.76%), Query Frame = 0
BLAST of MS003975 vs. ExPASy TrEMBL
Match: A0A6J1C8A4 (LYR motif-containing protein 4 OS=Momordica charantia OX=3673 GN=LOC111008892 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 3.5e-37 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0
BLAST of MS003975 vs. ExPASy TrEMBL
Match: A0A0A0LST7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G039010 PE=4 SV=1) HSP 1 Score: 142.1 bits (357), Expect = 1.1e-30 Identity = 75/86 (87.21%), Postives = 80/86 (93.02%), Query Frame = 0
BLAST of MS003975 vs. ExPASy TrEMBL
Match: A0A2I4FW34 (LYR motif-containing protein 4-like OS=Juglans regia OX=51240 GN=LOC109002531 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 4.6e-29 Identity = 69/84 (82.14%), Postives = 79/84 (94.05%), Query Frame = 0
BLAST of MS003975 vs. ExPASy TrEMBL
Match: A0A251UU63 (Putative complex 1 LYR protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr05g0157171 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 4.6e-29 Identity = 68/87 (78.16%), Postives = 83/87 (95.40%), Query Frame = 0
BLAST of MS003975 vs. ExPASy TrEMBL
Match: A0A7N2MN47 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1) HSP 1 Score: 135.6 bits (340), Expect = 1.0e-28 Identity = 69/84 (82.14%), Postives = 79/84 (94.05%), Query Frame = 0
BLAST of MS003975 vs. TAIR 10
Match: AT5G61220.1 (LYR family of Fe/S cluster biogenesis protein ) HSP 1 Score: 97.8 bits (242), Expect = 4.5e-21 Identity = 51/84 (60.71%), Postives = 63/84 (75.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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