MS003852 (gene) Bitter gourd (TR) v1

Overview


Name	MS003852
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	TF-B3 domain-containing protein
Location	scaffold127: 956291 .. 956704 (-)
RNA-Seq Expression	MS003852
Synteny	MS003852

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCGAAGAGCGTCGGGGGATGCCACCGGTGCCGGCGATCAGGGACGTGATCGGGCAGTGCAGCCGGGCGTACGAGAAGAGGCTGACGGTAAGCGACGTGGCGGAGGAGCAAGGGCGGCTGGCGATTGGGAAGGAATTCGTGACCAAATATTTGGCTCCAATGTTTAACAACAAGGATGAGAATGAGAATCTGAGAGAGGGAATTGAAGTGACGGTTTATAACAGAGAAGGGAGAGAATTCGGTATGACGTTTAAGATTTGGGCTTCAAAATTGTACGTGCTCATGAAAGGGTGGAAGCCGTTCTGTAAAGCCAATAATTTGACGCACGCCCACGCCGGAGAGTTCCTCACTTTATGGATGTTTCGCCATCGTCGCACCCACGGCCTCTGTTTTGCCATTATTCTGGGAACACCC

mRNA sequence

GGCGAAGAGCGTCGGGGGATGCCACCGGTGCCGGCGATCAGGGACGTGATCGGGCAGTGCAGCCGGGCGTACGAGAAGAGGCTGACGGTAAGCGACGTGGCGGAGGAGCAAGGGCGGCTGGCGATTGGGAAGGAATTCGTGACCAAATATTTGGCTCCAATGTTTAACAACAAGGATGAGAATGAGAATCTGAGAGAGGGAATTGAAGTGACGGTTTATAACAGAGAAGGGAGAGAATTCGGTATGACGTTTAAGATTTGGGCTTCAAAATTGTACGTGCTCATGAAAGGGTGGAAGCCGTTCTGTAAAGCCAATAATTTGACGCACGCCCACGCCGGAGAGTTCCTCACTTTATGGATGTTTCGCCATCGTCGCACCCACGGCCTCTGTTTTGCCATTATTCTGGGAACACCC

Coding sequence (CDS)

GGCGAAGAGCGTCGGGGGATGCCACCGGTGCCGGCGATCAGGGACGTGATCGGGCAGTGCAGCCGGGCGTACGAGAAGAGGCTGACGGTAAGCGACGTGGCGGAGGAGCAAGGGCGGCTGGCGATTGGGAAGGAATTCGTGACCAAATATTTGGCTCCAATGTTTAACAACAAGGATGAGAATGAGAATCTGAGAGAGGGAATTGAAGTGACGGTTTATAACAGAGAAGGGAGAGAATTCGGTATGACGTTTAAGATTTGGGCTTCAAAATTGTACGTGCTCATGAAAGGGTGGAAGCCGTTCTGTAAAGCCAATAATTTGACGCACGCCCACGCCGGAGAGTTCCTCACTTTATGGATGTTTCGCCATCGTCGCACCCACGGCCTCTGTTTTGCCATTATTCTGGGAACACCC

Protein sequence

GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAIILGTP

Homology

[Close]

BLAST of MS003852 vs. NCBI nr
Match: XP_022145065.1 (putative B3 domain-containing protein At4g03170 [Momordica charantia])

HSP 1 Score: 291.2 bits (744), Expect = 4.7e-75
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDE 60
           GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAE QGRLAIGKEFVTKYLAPMFNNKDE
Sbjct: 102 GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEAQGRLAIGKEFVTKYLAPMFNNKDE 161

Query: 61  NENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM 120
           NENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM
Sbjct: 162 NENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM 221

Query: 121 FRHRRTHGLCFAIILGTP 139
           FRHRRTHGLCFAIILGTP
Sbjct: 222 FRHRRTHGLCFAIILGTP 239

[Close]

BLAST of MS003852 vs. NCBI nr
Match: KAG7023605.1 (putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 149.4 bits (376), Expect = 2.2e-32
Identity = 74/130 (56.92%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 7   MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLRE 66
           +P +  I ++IG  S  +EKRLT SDV+E QGRL + KEFVT +L PMFN    +E+  E
Sbjct: 32  IPALAVIMNIIGARSPPWEKRLTKSDVSEGQGRLIVRKEFVTNHLLPMFN---ADEDPSE 91

Query: 67  GIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWMFRHRRT 126
           GI+VTVYN EGR++ M FK+WASKLYVL KGW  F K NNLT    G ++TLWMFRH  T
Sbjct: 92  GIDVTVYNGEGRQYDMQFKLWASKLYVLTKGWNDFYKTNNLT--EPGLYVTLWMFRHVET 151

Query: 127 HGLCFAIILG 137
           H +CFA+  G
Sbjct: 152 HKICFAVTAG 156

[Close]

BLAST of MS003852 vs. NCBI nr
Match: KAG6589940.1 (putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 2.9e-32
Identity = 74/130 (56.92%), Postives = 92/130 (70.77%), Query Frame = 0


Query: 7   MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLRE 66
           +P +  I ++IG  S  +EKRLT SDV+E QGRL + KEFVT +L PMFN    +E+  E
Sbjct: 83  IPALAVIMNIIGARSPPWEKRLTKSDVSEGQGRLIVRKEFVTNHLLPMFN---ADEDPSE 142

Query: 67  GIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWMFRHRRT 126
           GI+VTVYN EGR++ M FK+WASKLYVL KGW  F K NNLT    G ++TLWMFRH  T
Sbjct: 143 GIDVTVYNGEGRQYDMQFKLWASKLYVLTKGWNDFYKTNNLT--DPGLYVTLWMFRHVET 202

Query: 127 HGLCFAIILG 137
           H +CFA+  G
Sbjct: 203 HKICFAVTAG 207

[Close]

BLAST of MS003852 vs. NCBI nr
Match: XP_031736688.1 (uncharacterized protein LOC116402065 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 3.8e-32
Identity = 73/136 (53.68%), Postives = 93/136 (68.38%), Query Frame = 0


Query: 1   GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDE 60
           G +   +PP+  I+++IG+CS  + K+L  +DV E QGRLA+ KEFVT+ L PMFN    
Sbjct: 88  GRDWGRVPPMAVIQNIIGECSPPFVKQLMKTDVTESQGRLALHKEFVTRNLIPMFN---R 147

Query: 61  NENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM 120
            ENL+ GI VTVY+ EGRE+ M FK W SKLYVL K W  F K+NNLT    GEF+++WM
Sbjct: 148 GENLKNGISVTVYDSEGREYDMIFKFWTSKLYVLTKSWNKFYKSNNLT--RPGEFISVWM 207

Query: 121 FRHRRTHGLCFAIILG 137
           FRH     LCFAI+ G
Sbjct: 208 FRHVVNRKLCFAIMRG 218

[Close]

BLAST of MS003852 vs. NCBI nr
Match: KGN56101.1 (hypothetical protein Csa_010492 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-31
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = 0


Query: 1   GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDE 60
           G ++   PP+  I+++IG+CS  + K+LT +DV + QGRLA+ KEFV   L PMFN   +
Sbjct: 93  GRDQGRFPPMAVIQNIIGECSPPFVKQLTKTDVTDNQGRLALHKEFVNLNLDPMFN---D 152

Query: 61  NENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM 120
           +E+L +GI V VY+ EGRE+ M FK+WASKLYVL K WK F K N+LT    GEF+++WM
Sbjct: 153 DEDLEDGISVIVYDIEGREYDMIFKLWASKLYVLTKSWKEFYKTNDLT--QPGEFISVWM 212

Query: 121 FRHRRTHGLCFAIILG 137
           FRH  T  LCFAI+ G
Sbjct: 213 FRHVVTQKLCFAIMRG 223

[Close]

BLAST of MS003852 vs. ExPASy Swiss-Prot
Match: Q9ZR14 (Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana OX=3702 GN=At4g03170 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.7e-14
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 21  SRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREF 80
           SR  +K+L  SDV ++Q  L + KE V + + P     +++EN  +GI+V+VY  +G+  
Sbjct: 133 SRPIKKQLMSSDVDKDQCMLMLSKEQVKEKMLPFL---EDSENPVKGIDVSVYGPDGKVQ 192

Query: 81  GMTFKIW-ASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAI 134
            M FK+W   K  VL  GWK F +   L  +   +F+T+WMFRH +T  LCFAI
Sbjct: 193 QMEFKMWNGDKTPVLTSGWKQFVEDYGL--SMTCDFVTVWMFRHIKTRKLCFAI 241

[Close]

BLAST of MS003852 vs. ExPASy Swiss-Prot
Match: Q9ZR15 (Putative B3 domain-containing protein At4g03160 OS=Arabidopsis thaliana OX=3702 GN=At4g03160 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-13
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 22  RAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENL-REGIEVTVYNREGREF 81
           R   ++L  SDV + Q RL +GKE V K    M +   + E L  +G+ V+VY   G   
Sbjct: 63  RKVAEQLMDSDVKDNQYRLMLGKEPVKK----MMDALGKTEKLGTKGLNVSVYGPNGENH 122

Query: 82  GMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAI 134
            M  KIW     VL  GWK F K+  L   H  +FLT+WMFRH++T  +CFAI
Sbjct: 123 KMVLKIWIKGTPVLTSGWKNFVKSYKL-EKHV-DFLTIWMFRHKKTREICFAI 169

[Close]

BLAST of MS003852 vs. ExPASy Swiss-Prot
Match: Q9LM90 (B3 domain-containing protein At1g20600 OS=Arabidopsis thaliana OX=3702 GN=At1g20600 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 7.4e-07
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 15  DVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYN 74
           +V  + SR  +K+L  SDV  +Q RL + KE V + + P     +E+E+  +G++V+VY 
Sbjct: 116 EVTRRFSRPIKKQLMSSDVDTDQSRLMLSKEQVKEKMLPFL---EESEDPVKGVDVSVYG 175

Query: 75  REGREFGMTFKIW-ASKLYVLMKGWKPF 102
            +G    M FK+W   K  VL  GW  F
Sbjct: 176 PDGEVQQMKFKMWNGDKTPVLTSGWMQF 200

[Close]

BLAST of MS003852 vs. ExPASy TrEMBL
Match: A0A6J1CTE7 (putative B3 domain-containing protein At4g03170 OS=Momordica charantia OX=3673 GN=LOC111014582 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.3e-75
Identity = 137/138 (99.28%), Postives = 137/138 (99.28%), Query Frame = 0


Query: 1   GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDE 60
           GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAE QGRLAIGKEFVTKYLAPMFNNKDE
Sbjct: 102 GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEAQGRLAIGKEFVTKYLAPMFNNKDE 161

Query: 61  NENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM 120
           NENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM
Sbjct: 162 NENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM 221

Query: 121 FRHRRTHGLCFAIILGTP 139
           FRHRRTHGLCFAIILGTP
Sbjct: 222 FRHRRTHGLCFAIILGTP 239

[Close]

BLAST of MS003852 vs. ExPASy TrEMBL
Match: A0A0A0L7L0 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G073910 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.3e-32
Identity = 72/136 (52.94%), Postives = 96/136 (70.59%), Query Frame = 0


Query: 1   GEERRGMPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDE 60
           G ++   PP+  I+++IG+CS  + K+LT +DV + QGRLA+ KEFV   L PMFN   +
Sbjct: 93  GRDQGRFPPMAVIQNIIGECSPPFVKQLTKTDVTDNQGRLALHKEFVNLNLDPMFN---D 152

Query: 61  NENLREGIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWM 120
           +E+L +GI V VY+ EGRE+ M FK+WASKLYVL K WK F K N+LT    GEF+++WM
Sbjct: 153 DEDLEDGISVIVYDIEGREYDMIFKLWASKLYVLTKSWKEFYKTNDLT--QPGEFISVWM 212

Query: 121 FRHRRTHGLCFAIILG 137
           FRH  T  LCFAI+ G
Sbjct: 213 FRHVVTQKLCFAIMRG 223

[Close]

BLAST of MS003852 vs. ExPASy TrEMBL
Match: A0A5D3BAS8 (Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold78209G00040 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.5e-31
Identity = 71/130 (54.62%), Postives = 90/130 (69.23%), Query Frame = 0


Query: 7   MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLRE 66
           +PP+  I+++IG+CS  + K+LT +DV + QGRLA+ KEFV + L PMFN    +E L  
Sbjct: 97  LPPMAVIQNIIGECSPPFVKQLTKTDVTDSQGRLALHKEFVNRNLVPMFNG---DEILTN 156

Query: 67  GIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWMFRHRRT 126
           GI VTVY+ EGRE+ MTF++W SKLYVL K WK F   N LT     EF+TLWMFRH   
Sbjct: 157 GISVTVYDSEGREYDMTFRLWTSKLYVLTKSWKKFYHDNGLT--RPDEFITLWMFRHVVN 216

Query: 127 HGLCFAIILG 137
           H LCFAI+ G
Sbjct: 217 HKLCFAIMRG 221

[Close]

BLAST of MS003852 vs. ExPASy TrEMBL
Match: A0A0A0LC65 (TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G609250 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.3e-30
Identity = 70/124 (56.45%), Postives = 87/124 (70.16%), Query Frame = 0


Query: 13  IRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTV 72
           I+++IG+CS  + K+L  +DV E QGRLA+ KEFVT+ L PMFN     ENL+ GI VTV
Sbjct: 4   IQNIIGECSPPFVKQLMKTDVTESQGRLALHKEFVTRNLIPMFN---RGENLKNGISVTV 63

Query: 73  YNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWMFRHRRTHGLCFA 132
           Y+ EGRE+ M FK W SKLYVL K W  F K+NNLT    GEF+++WMFRH     LCFA
Sbjct: 64  YDSEGREYDMIFKFWTSKLYVLTKSWNKFYKSNNLT--RPGEFISVWMFRHVVNRKLCFA 122

Query: 133 IILG 137
           I+ G
Sbjct: 124 IMRG 122

[Close]

BLAST of MS003852 vs. ExPASy TrEMBL
Match: A0A2P6P5L3 (Putative transcription factor B3-Domain family OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr7g0192641 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.0e-27
Identity = 64/129 (49.61%), Postives = 87/129 (67.44%), Query Frame = 0


Query: 7   MPPVPAIRDVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLRE 66
           +PPVP +R  I  CS+ +EK+LT SDV ++Q RLA+ KE V K L P+ N   ENE+LR 
Sbjct: 121 LPPVPRLRQFIEICSQPFEKQLTFSDVKDDQSRLAMSKEDVQKRLMPLLN---ENEDLRR 180

Query: 67  GIEVTVYNREGREFGMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWMFRHRRT 126
           GI+VT Y+ +G+E+ M FKIW  K++VL +GWK FC  + L      +F+T+WMFR+  T
Sbjct: 181 GIQVTTYDLDGKEYPMVFKIWVEKIHVLTEGWKAFCHDHKLVEKQ--DFVTVWMFRNAAT 240

Query: 127 HGLCFAIIL 136
             LCF I L
Sbjct: 241 GSLCFVIDL 244

[Close]

BLAST of MS003852 vs. TAIR 10
Match: AT4G03170.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-15
Identity = 46/114 (40.35%), Postives = 68/114 (59.65%), Query Frame = 0


Query: 21  SRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYNREGREF 80
           SR  +K+L  SDV ++Q  L + KE V + + P     +++EN  +GI+V+VY  +G+  
Sbjct: 133 SRPIKKQLMSSDVDKDQCMLMLSKEQVKEKMLPFL---EDSENPVKGIDVSVYGPDGKVQ 192

Query: 81  GMTFKIW-ASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAI 134
            M FK+W   K  VL  GWK F +   L  +   +F+T+WMFRH +T  LCFAI
Sbjct: 193 QMEFKMWNGDKTPVLTSGWKQFVEDYGL--SMTCDFVTVWMFRHIKTRKLCFAI 241

[Close]

BLAST of MS003852 vs. TAIR 10
Match: AT4G03160.1 (BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT4G03170.1); Has 46 Blast hits to 46 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). )

HSP 1 Score: 77.8 bits (190), Expect = 7.6e-15
Identity = 47/113 (41.59%), Postives = 62/113 (54.87%), Query Frame = 0


Query: 22  RAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENL-REGIEVTVYNREGREF 81
           R   ++L  SDV + Q RL +GKE V K    M +   + E L  +G+ V+VY   G   
Sbjct: 63  RKVAEQLMDSDVKDNQYRLMLGKEPVKK----MMDALGKTEKLGTKGLNVSVYGPNGENH 122

Query: 82  GMTFKIWASKLYVLMKGWKPFCKANNLTHAHAGEFLTLWMFRHRRTHGLCFAI 134
            M  KIW     VL  GWK F K+  L   H  +FLT+WMFRH++T  +CFAI
Sbjct: 123 KMVLKIWIKGTPVLTSGWKNFVKSYKL-EKHV-DFLTIWMFRHKKTREICFAI 169

[Close]

BLAST of MS003852 vs. TAIR 10
Match: AT1G20600.1 (AP2/B3-like transcriptional factor family protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-08
Identity = 32/88 (36.36%), Postives = 49/88 (55.68%), Query Frame = 0


Query: 15  DVIGQCSRAYEKRLTVSDVAEEQGRLAIGKEFVTKYLAPMFNNKDENENLREGIEVTVYN 74
           +V  + SR  +K+L  SDV  +Q RL + KE V + + P     +E+E+  +G++V+VY 
Sbjct: 116 EVTRRFSRPIKKQLMSSDVDTDQSRLMLSKEQVKEKMLPFL---EESEDPVKGVDVSVYG 175

Query: 75  REGREFGMTFKIW-ASKLYVLMKGWKPF 102
            +G    M FK+W   K  VL  GW  F
Sbjct: 176 PDGEVQQMKFKMWNGDKTPVLTSGWMQF 200

The following BLAST results are available for this feature:

BLAST of MS003852 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145065.1	4.7e-75	99.28	putative B3 domain-containing protein At4g03170 [Momordica charantia]	[more]
KAG7023605.1	2.2e-32	56.92	putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. ar...	[more]
KAG6589940.1	2.9e-32	56.92	putative B3 domain-containing protein, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_031736688.1	3.8e-32	53.68	uncharacterized protein LOC116402065 [Cucumis sativus]	[more]
KGN56101.1	1.1e-31	52.94	hypothetical protein Csa_010492 [Cucumis sativus]	[more]

BLAST of MS003852 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZR14	1.7e-14	40.35	Putative B3 domain-containing protein At4g03170 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9ZR15	1.1e-13	41.59	Putative B3 domain-containing protein At4g03160 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9LM90	7.4e-07	36.36	B3 domain-containing protein At1g20600 OS=Arabidopsis thaliana OX=3702 GN=At1g20...	[more]

BLAST of MS003852 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTE7	2.3e-75	99.28	putative B3 domain-containing protein At4g03170 OS=Momordica charantia OX=3673 G...	[more]
A0A0A0L7L0	5.3e-32	52.94	TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G073910 PE=4 ...	[more]
A0A5D3BAS8	1.5e-31	54.62	Putative B3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A0A0LC65	1.3e-30	56.45	TF-B3 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G609250 PE=4 ...	[more]
A0A2P6P5L3	1.0e-27	49.61	Putative transcription factor B3-Domain family OS=Rosa chinensis OX=74649 GN=Rch...	[more]

BLAST of MS003852 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G03170.1	1.2e-15	40.35	AP2/B3-like transcriptional factor family protein	[more]
AT4G03160.1	7.6e-15	41.59	BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor f...	[more]
AT1G20600.1	5.3e-08	36.36	AP2/B3-like transcriptional factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 24..133 e-value: 5.1E-6 score: 36.0
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 25..122 e-value: 3.5E-11 score: 42.8
IPR003340	B3 DNA binding domain	PROSITE	PS50863	B3	coord: 25..137 score: 8.797165
IPR003340	B3 DNA binding domain	CDD	cd10017	B3_DNA	coord: 24..134 e-value: 5.60075E-16 score: 66.5825
IPR015300	DNA-binding pseudobarrel domain superfamily	GENE3D	2.40.330.10		coord: 18..130 e-value: 1.8E-20 score: 74.9
IPR015300	DNA-binding pseudobarrel domain superfamily	SUPERFAMILY	101936	DNA-binding pseudobarrel domain	coord: 24..131
IPR005508	B3 domain-containing protein At2g31720-like	PANTHER	PTHR31541	B3 DOMAIN PLANT PROTEIN-RELATED	coord: 7..133
None	No IPR available	PANTHER	PTHR31541:SF43	DOMAIN-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 7..133

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003852.1	MS003852.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding