MS003827 (gene) Bitter gourd (TR) v1

Overview


Name	MS003827
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein LIKE COV 1-like
Location	scaffold127: 799123 .. 799814 (-)
RNA-Seq Expression	MS003827
Synteny	MS003827

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAATTATTCTGGAGAGGAGGAGCTATGTTGTGTCTATGTTCCCACCAACCATCTTTACATTGGTGATGTTTTCCTAGTTAACTCACAGGATGTTATTAGACCGAATTTATCTGTACGGGAAGGAATTGGTGAGTTTTTCTTTTTGTCATTATGTCCAGAATTGCTTTGCCCGAGTGAAAAGGCAGTTTCTCCTGAAATTAATGAAATACCCGTTTATTGCTTTCAAAGTCCTGGATATATGGATTATCTTGTAGGTTTGAGTGTGTTGTGGCTGTTGGGACAGGTTTTCTGATTGTAAGGAAATAATAATTTAAGAAAGAAATATAAGGGTAAAAAAACTATTTAAGAAGGATGAGAGGAGGATCTTGTTGCCGGGTGGCCGGGTGTGCAAGTCAAATATTTCTCATCATAATAATTTCTCCATGAAACATTTGTCTGAAAAAACAACCTTATAATCCAGAACCAAGCGGATTGATGGTATTGAAATTGTGTTTCACCACCAAATGACTGAAATTAGCTGTTTGAGTAGTCCTATTATAAGGATGACCGGTAACTCTGTAACCGTAAAAAACTTTCATTTCTTTAATTGCAGAGATCGTGGTTTCTGGAGGCATGTCAATGCCGCAGATTCTATCCATACTGGATTCACACGCCAGACCAATTGATAGTAGAAGATTGACTAGAAGC

mRNA sequence

ATGCAGAATTATTCTGGAGAGGAGGAGCTATGTTGTGTCTATGTTCCCACCAACCATCTTTACATTGGTGATGTTTTCCTAGTTAACTCACAGGATGTTATTAGACCGAATTTATCTGTACGGGAAGGAATTGAGATCGTGGTTTCTGGAGGCATGTCAATGCCGCAGATTCTATCCATACTGGATTCACACGCCAGACCAATTGATAGTAGAAGATTGACTAGAAGC

Coding sequence (CDS)

ATGCAGAATTATTCTGGAGAGGAGGAGCTATGTTGTGTCTATGTTCCCACCAACCATCTTTACATTGGTGATGTTTTCCTAGTTAACTCACAGGATGTTATTAGACCGAATTTATCTGTACGGGAAGGAATTGAGATCGTGGTTTCTGGAGGCATGTCAATGCCGCAGATTCTATCCATACTGGATTCACACGCCAGACCAATTGATAGTAGAAGATTGACTAGAAGC

Protein sequence

MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSILDSHARPIDSRRLTRS

Homology

[Close]

BLAST of MS003827 vs. NCBI nr
Match: XP_022145033.1 (protein LIKE COV 1-like [Momordica charantia])

HSP 1 Score: 154.5 bits (389), Expect = 3.8e-34
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +QNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI
Sbjct: 192 LQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 251

Query: 61  LDSHARPIDSRRLTRS 77
           LDSHARPIDSRRLTRS
Sbjct: 252 LDSHARPIDSRRLTRS 267

[Close]

BLAST of MS003827 vs. NCBI nr
Match: XP_016902924.1 (PREDICTED: protein CONTINUOUS VASCULAR RING 1-like isoform X3 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 6.0e-32
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +Q+YSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI
Sbjct: 157 LQSYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 216

Query: 61  LDSHARPIDSRRLTRS 77
           LDS  RPIDSRRLTRS
Sbjct: 217 LDSDIRPIDSRRLTRS 232

[Close]

BLAST of MS003827 vs. NCBI nr
Match: XP_016902923.1 (PREDICTED: protein LIKE COV 1-like isoform X1 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 6.0e-32
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +Q+YSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI
Sbjct: 201 LQSYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 260

Query: 61  LDSHARPIDSRRLTRS 77
           LDS  RPIDSRRLTRS
Sbjct: 261 LDSDIRPIDSRRLTRS 276

[Close]

BLAST of MS003827 vs. NCBI nr
Match: XP_008462683.1 (PREDICTED: protein LIKE COV 1-like isoform X2 [Cucumis melo])

HSP 1 Score: 147.1 bits (370), Expect = 6.0e-32
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +Q+YSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI
Sbjct: 192 LQSYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 251

Query: 61  LDSHARPIDSRRLTRS 77
           LDS  RPIDSRRLTRS
Sbjct: 252 LDSDIRPIDSRRLTRS 267

[Close]

BLAST of MS003827 vs. NCBI nr
Match: XP_038880670.1 (protein LIKE COV 1-like [Benincasa hispida])

HSP 1 Score: 147.1 bits (370), Expect = 6.0e-32
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +Q+YSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI
Sbjct: 192 LQSYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 251

Query: 61  LDSHARPIDSRRLTRS 77
           LDS  RPIDSRRLTRS
Sbjct: 252 LDSDIRPIDSRRLTRS 267

[Close]

BLAST of MS003827 vs. ExPASy Swiss-Prot
Match: F4IUE7 (Protein CONTINUOUS VASCULAR RING 1 OS=Arabidopsis thaliana OX=3702 GN=COV1 PE=1 SV=2)

HSP 1 Score: 117.1 bits (292), Expect = 8.8e-26
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +QNY  EEELCCVYVPTNHLYIGD+ LVNS DVIRPNLSVREGIEIVVSGGMSMPQILS 
Sbjct: 195 LQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVVSGGMSMPQILST 254

Query: 61  LDSHARPID 70
           +D     ID
Sbjct: 255 VDKPLASID 263

[Close]

BLAST of MS003827 vs. ExPASy Swiss-Prot
Match: Q8VY49 (Protein LIKE COV 1 OS=Arabidopsis thaliana OX=3702 GN=LCV1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.0e-25
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +QNY  EEELCCVYVPTNHLYIGD+ LVNS DVIRPNLSVREGIEIVVSGGMSMPQILS 
Sbjct: 185 LQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVVSGGMSMPQILST 244

Query: 61  LD 63
           LD
Sbjct: 245 LD 246

[Close]

BLAST of MS003827 vs. ExPASy Swiss-Prot
Match: F4IQJ6 (Protein LIKE COV 3 OS=Arabidopsis thaliana OX=3702 GN=LCV3 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.9e-22
Identity = 45/63 (71.43%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           ++  +G EELCCVYVPTNHLY+GD+FL++S+D+IRPNLSVREGIEIV+SGGMS+P +L+ 
Sbjct: 185 LRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLSVREGIEIVISGGMSIPHMLTT 244

Query: 61  LDS 64
           LDS
Sbjct: 245 LDS 247

[Close]

BLAST of MS003827 vs. ExPASy Swiss-Prot
Match: Q9C8C1 (Protein LIKE COV 2 OS=Arabidopsis thaliana OX=3702 GN=LCV2 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-20
Identity = 45/62 (72.58%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +Q   GEEELC VYVPTNHLYIGDVFLV+S+++IRPNLS+REGIEI+VS GM+MPQ++S 
Sbjct: 181 LQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIEIIVSVGMTMPQVISH 240

Query: 61  LD 63
           +D
Sbjct: 241 VD 242

[Close]

BLAST of MS003827 vs. ExPASy TrEMBL
Match: A0A6J1CUV2 (protein LIKE COV 1-like OS=Momordica charantia OX=3673 GN=LOC111014556 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-34
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +QNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI
Sbjct: 192 LQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 251

Query: 61  LDSHARPIDSRRLTRS 77
           LDSHARPIDSRRLTRS
Sbjct: 252 LDSHARPIDSRRLTRS 267

[Close]

BLAST of MS003827 vs. ExPASy TrEMBL
Match: A0A1S4E3W8 (protein LIKE COV 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500987 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-32
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +Q+YSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI
Sbjct: 201 LQSYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 260

Query: 61  LDSHARPIDSRRLTRS 77
           LDS  RPIDSRRLTRS
Sbjct: 261 LDSDIRPIDSRRLTRS 276

[Close]

BLAST of MS003827 vs. ExPASy TrEMBL
Match: A0A1S4E3X2 (protein CONTINUOUS VASCULAR RING 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103500987 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-32
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +Q+YSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI
Sbjct: 157 LQSYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 216

Query: 61  LDSHARPIDSRRLTRS 77
           LDS  RPIDSRRLTRS
Sbjct: 217 LDSDIRPIDSRRLTRS 232

[Close]

BLAST of MS003827 vs. ExPASy TrEMBL
Match: A0A1S3CI12 (protein LIKE COV 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500987 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 2.9e-32
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +Q+YSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI
Sbjct: 192 LQSYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 251

Query: 61  LDSHARPIDSRRLTRS 77
           LDS  RPIDSRRLTRS
Sbjct: 252 LDSDIRPIDSRRLTRS 267

[Close]

BLAST of MS003827 vs. ExPASy TrEMBL
Match: A0A6J1F5R8 (protein LIKE COV 1-like OS=Cucurbita moschata OX=3662 GN=LOC111441082 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 5.0e-32
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +QNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI
Sbjct: 192 LQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 251

Query: 61  LDSHARPIDSRRLTRS 77
           L+ H +PIDSRR+TRS
Sbjct: 252 LNPHIQPIDSRRMTRS 267

[Close]

BLAST of MS003827 vs. TAIR 10
Match: AT2G20120.1 (Protein of unknown function (DUF502) )

HSP 1 Score: 116.3 bits (290), Expect = 1.1e-26
Identity = 56/69 (81.16%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +QNY  EEELCCVYVPTNHLYIGD+ LVNS DVIRPNLSVREGIEIVVSGGMSMPQILS 
Sbjct: 195 LQNYPTEEELCCVYVPTNHLYIGDLLLVNSNDVIRPNLSVREGIEIVVSGGMSMPQILST 254

Query: 61  LDSHARPID 70
           +D     ID
Sbjct: 255 VDKPLASID 263

[Close]

BLAST of MS003827 vs. TAIR 10
Match: AT2G20130.1 (like COV 1 )

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-26
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +QNY  EEELCCVYVPTNHLYIGD+ LVNS DVIRPNLSVREGIEIVVSGGMSMPQILS 
Sbjct: 185 LQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVVSGGMSMPQILST 244

Query: 61  LD 63
           LD
Sbjct: 245 LD 246

[Close]

BLAST of MS003827 vs. TAIR 10
Match: AT2G18460.1 (like COV 3 )

HSP 1 Score: 104.4 bits (259), Expect = 4.2e-23
Identity = 45/63 (71.43%), Postives = 58/63 (92.06%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           ++  +G EELCCVYVPTNHLY+GD+FL++S+D+IRPNLSVREGIEIV+SGGMS+P +L+ 
Sbjct: 185 LRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLSVREGIEIVISGGMSIPHMLTT 244

Query: 61  LDS 64
           LDS
Sbjct: 245 LDS 247

[Close]

BLAST of MS003827 vs. TAIR 10
Match: AT1G43130.1 (like COV 2 )

HSP 1 Score: 100.1 bits (248), Expect = 7.9e-22
Identity = 45/62 (72.58%), Postives = 56/62 (90.32%), Query Frame = 0


Query: 1   MQNYSGEEELCCVYVPTNHLYIGDVFLVNSQDVIRPNLSVREGIEIVVSGGMSMPQILSI 60
           +Q   GEEELC VYVPTNHLYIGDVFLV+S+++IRPNLS+REGIEI+VS GM+MPQ++S 
Sbjct: 181 LQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIEIIVSVGMTMPQVISH 240

Query: 61  LD 63
           +D
Sbjct: 241 VD 242

The following BLAST results are available for this feature:

BLAST of MS003827 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145033.1	3.8e-34	98.68	protein LIKE COV 1-like [Momordica charantia]	[more]
XP_016902924.1	6.0e-32	94.74	PREDICTED: protein CONTINUOUS VASCULAR RING 1-like isoform X3 [Cucumis melo]	[more]
XP_016902923.1	6.0e-32	94.74	PREDICTED: protein LIKE COV 1-like isoform X1 [Cucumis melo]	[more]
XP_008462683.1	6.0e-32	94.74	PREDICTED: protein LIKE COV 1-like isoform X2 [Cucumis melo]	[more]
XP_038880670.1	6.0e-32	94.74	protein LIKE COV 1-like [Benincasa hispida]	[more]

BLAST of MS003827 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IUE7	8.8e-26	81.16	Protein CONTINUOUS VASCULAR RING 1 OS=Arabidopsis thaliana OX=3702 GN=COV1 PE=1 ...	[more]
Q8VY49	2.0e-25	88.71	Protein LIKE COV 1 OS=Arabidopsis thaliana OX=3702 GN=LCV1 PE=2 SV=1	[more]
F4IQJ6	5.9e-22	71.43	Protein LIKE COV 3 OS=Arabidopsis thaliana OX=3702 GN=LCV3 PE=2 SV=1	[more]
Q9C8C1	1.1e-20	72.58	Protein LIKE COV 2 OS=Arabidopsis thaliana OX=3702 GN=LCV2 PE=2 SV=1	[more]

BLAST of MS003827 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CUV2	1.8e-34	98.68	protein LIKE COV 1-like OS=Momordica charantia OX=3673 GN=LOC111014556 PE=4 SV=1	[more]
A0A1S4E3W8	2.9e-32	94.74	protein LIKE COV 1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500987 PE=4 ...	[more]
A0A1S4E3X2	2.9e-32	94.74	protein CONTINUOUS VASCULAR RING 1-like isoform X3 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A1S3CI12	2.9e-32	94.74	protein LIKE COV 1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103500987 PE=4 ...	[more]
A0A6J1F5R8	5.0e-32	92.11	protein LIKE COV 1-like OS=Cucurbita moschata OX=3662 GN=LOC111441082 PE=4 SV=1	[more]

BLAST of MS003827 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G20120.1	1.1e-26	81.16	Protein of unknown function (DUF502)	[more]
AT2G20130.1	1.4e-26	88.71	like COV 1	[more]
AT2G18460.1	4.2e-23	71.43	like COV 3	[more]
AT1G43130.1	7.9e-22	72.58	like COV 2	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31876:SF19	PROTEIN CONTINUOUS VASCULAR RING 1-RELATED	coord: 1..65
None	No IPR available	PANTHER	PTHR31876	COV-LIKE PROTEIN 1	coord: 1..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003827.1	MS003827.1	mRNA