MS003807 (gene) Bitter gourd (TR) v1

Overview
NameMS003807
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionLate embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Locationscaffold127: 677283 .. 677387 (-)
RNA-Seq ExpressionMS003807
SyntenyMS003807
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTGCTTTAATGGTGTTTTCTTATCAGGCAAGGGTGTCATGTGAGGTTTTTGTGAATACAAATGACAAAACGATTGAACATCAAGATTGCTACCCTGAGGTGAGG

mRNA sequence

GTTGCTTTAATGGTGTTTTCTTATCAGGCAAGGGTGTCATGTGAGGTTTTTGTGAATACAAATGACAAAACGATTGAACATCAAGATTGCTACCCTGAGGTGAGG

Coding sequence (CDS)

GTTGCTTTAATGGTGTTTTCTTATCAGGCAAGGGTGTCATGTGAGGTTTTTGTGAATACAAATGACAAAACGATTGAACATCAAGATTGCTACCCTGAGGTGAGG

Protein sequence

VALMVFSYQARVSCEVFVNTNDKTIEHQDCYPEVR
Homology
BLAST of MS003807 vs. NCBI nr
Match: XP_022144909.1 (uncharacterized protein LOC111014473 [Momordica charantia])

HSP 1 Score: 58.2 bits (139), Expect = 1.7e-05
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 6   FSYQARVSCEVFVNTNDKTIEHQDCYPE 34
           F  +ARVSCEVFVNTNDKTIEHQDCYPE
Sbjct: 188 FPIKARVSCEVFVNTNDKTIEHQDCYPE 215

BLAST of MS003807 vs. ExPASy TrEMBL
Match: A0A6J1CTN0 (uncharacterized protein LOC111014473 OS=Momordica charantia OX=3673 GN=LOC111014473 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.2e-06
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 0

Query: 6   FSYQARVSCEVFVNTNDKTIEHQDCYPE 34
           F  +ARVSCEVFVNTNDKTIEHQDCYPE
Sbjct: 188 FPIKARVSCEVFVNTNDKTIEHQDCYPE 215

BLAST of MS003807 vs. TAIR 10
Match: AT4G13270.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family )

HSP 1 Score: 38.9 bits (89), Expect = 9.9e-04
Identity = 16/31 (51.61%), Postives = 21/31 (67.74%), Query Frame = 0

Query: 1   VALMVFSYQARVSCEVFVNTNDKTIEHQDCY 32
           V L     Q +VSCEV+VN N++ I HQDC+
Sbjct: 183 VLLFNIPIQGKVSCEVYVNVNNQKISHQDCH 213

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022144909.11.7e-0589.29uncharacterized protein LOC111014473 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CTN08.2e-0689.29uncharacterized protein LOC111014473 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
Match NameE-valueIdentityDescription
AT4G13270.19.9e-0451.61Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003807.1MS003807.1mRNA