MS003806 (gene) Bitter gourd (TR) v1

Overview
NameMS003806
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionserine-rich protein-related
Locationscaffold127: 676423 .. 676692 (+)
RNA-Seq ExpressionMS003806
SyntenyMS003806
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTACCCTTACCCACATGATTTGCAGCCTCACCTGGTAAGCCGGAGGGAGTTGGGTGTCCAATGCAACTGGCTCCTGTTGCAGGCTGCGGCAGTGGCCAGGAGTGGTGATGGTGGCGGCAGGTCGGATAAAAGACAGTGCTTGTGCTCACCGACCGAGCACCCCGGGTCATTTCGTTGCAGACTACACCGCAACGAGTACGTTTGGGTTGGCCGGAATCGGATGGTAAAAAGTGAATCGGCCAGCAAAGTATTTTCCGTCCAACGA

mRNA sequence

ATGTGTTACCCTTACCCACATGATTTGCAGCCTCACCTGGTAAGCCGGAGGGAGTTGGGTGTCCAATGCAACTGGCTCCTGTTGCAGGCTGCGGCAGTGGCCAGGAGTGGTGATGGTGGCGGCAGGTCGGATAAAAGACAGTGCTTGTGCTCACCGACCGAGCACCCCGGGTCATTTCGTTGCAGACTACACCGCAACGAGTACGTTTGGGTTGGCCGGAATCGGATGGTAAAAAGTGAATCGGCCAGCAAAGTATTTTCCGTCCAACGA

Coding sequence (CDS)

ATGTGTTACCCTTACCCACATGATTTGCAGCCTCACCTGGTAAGCCGGAGGGAGTTGGGTGTCCAATGCAACTGGCTCCTGTTGCAGGCTGCGGCAGTGGCCAGGAGTGGTGATGGTGGCGGCAGGTCGGATAAAAGACAGTGCTTGTGCTCACCGACCGAGCACCCCGGGTCATTTCGTTGCAGACTACACCGCAACGAGTACGTTTGGGTTGGCCGGAATCGGATGGTAAAAAGTGAATCGGCCAGCAAAGTATTTTCCGTCCAACGA

Protein sequence

MCYPYPHDLQPHLVSRRELGVQCNWLLLQAAAVARSGDGGGRSDKRQCLCSPTEHPGSFRCRLHRNEYVWVGRNRMVKSESASKVFSVQR
Homology
BLAST of MS003806 vs. NCBI nr
Match: KAG6589902.1 (hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 7.4e-21
Identity = 55/83 (66.27%), Postives = 61/83 (73.49%), Query Frame = 0

Query: 1  MCYPYPHDLQPHLVSRRELGVQCNWLLLQAAAVARSGDGGGRSDKRQCLCSPTEHPGSFR 60
          MC  YPHD+ P    R  L VQCNW+LLQ AA A    GGG S K++CLCSPT HPGSFR
Sbjct: 1  MC--YPHDVPPR---REFLNVQCNWVLLQTAATAVE-SGGGESVKKRCLCSPTRHPGSFR 60

Query: 61 CRLHRNEYVWVGRNRMVKSESAS 84
          CRLHR+EYVWVGR RMVKS  A+
Sbjct: 61 CRLHRSEYVWVGRPRMVKSGPAA 77

BLAST of MS003806 vs. NCBI nr
Match: KGN65356.1 (hypothetical protein Csa_020011 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 9.4e-16
Identity = 47/87 (54.02%), Postives = 54/87 (62.07%), Query Frame = 0

Query: 1  MCYPYPHDLQPHLVSRREL-GVQCNWLLLQAA----AVARSGDGGGRSDKRQCLCSPTEH 60
          MCYP+      H +SRR+   +QCNW+L Q      A       G  S KR+CLCSPT H
Sbjct: 1  MCYPH------HFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRH 60

Query: 61 PGSFRCRLHRNEYVWVGRNRMVKSESA 83
          PGSFRCRLHRNEYVWV R R VK+  A
Sbjct: 61 PGSFRCRLHRNEYVWVARRRTVKNGPA 81

BLAST of MS003806 vs. NCBI nr
Match: KAA0046597.1 (hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 6.1e-15
Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 1  MCYPYPHDLQPHLVSRRE-LGVQCNWLLLQ-------AAAVARSGDGGGRSDKRQCLCSP 60
          MCYP+      H + R + L  QCNW+L Q        AA+   GD  G   KR+CLCSP
Sbjct: 1  MCYPH------HFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESG---KRRCLCSP 60

Query: 61 TEHPGSFRCRLHRNEYVWVGRNRMVKSESA 83
          T HPGSFRCRLHR+EYVWV R R VK+ SA
Sbjct: 61 TTHPGSFRCRLHRSEYVWVARRRTVKNVSA 81

BLAST of MS003806 vs. NCBI nr
Match: KAG7021840.1 (hypothetical protein SDJN02_15568 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.6 bits (192), Expect = 3.1e-11
Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 0

Query: 1  MCYPYPHDLQPHLVSRRE-LGVQCNWLLLQAAAVARSGDGGGRSDKRQCLCSPTEHPG 58
          MC  YPHDL+P LVSRRE LGVQ NW+LLQAA+ A S   GG S K +CLCSPT HPG
Sbjct: 1  MC--YPHDLRPWLVSRRELLGVQSNWVLLQAASAAGSSSNGGGSAKVRCLCSPTGHPG 56

BLAST of MS003806 vs. NCBI nr
Match: KAB5514276.1 (hypothetical protein DKX38_028182 [Salix brachista])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 17 RELGVQCNWLLLQA---------AAVARSGDGGGRSDKRQCLCSPTEHPGSFRCRLHRNE 74
          R L V   WL+LQA         A VA +G  GG    ++CLCSPT HPGSFRCR HR++
Sbjct: 11 RNLVVYRRWLVLQAAETETEHAPAEVAATGGSGGAGSTKKCLCSPTRHPGSFRCRHHRSD 70

BLAST of MS003806 vs. ExPASy TrEMBL
Match: A0A0A0LZG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.5e-16
Identity = 47/87 (54.02%), Postives = 54/87 (62.07%), Query Frame = 0

Query: 1  MCYPYPHDLQPHLVSRREL-GVQCNWLLLQAA----AVARSGDGGGRSDKRQCLCSPTEH 60
          MCYP+      H +SRR+   +QCNW+L Q      A       G  S KR+CLCSPT H
Sbjct: 1  MCYPH------HFLSRRDFSSLQCNWVLFQTTPAEDATPAIESCGDESGKRRCLCSPTRH 60

Query: 61 PGSFRCRLHRNEYVWVGRNRMVKSESA 83
          PGSFRCRLHRNEYVWV R R VK+  A
Sbjct: 61 PGSFRCRLHRNEYVWVARRRTVKNGPA 81

BLAST of MS003806 vs. ExPASy TrEMBL
Match: A0A5A7TXE6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001380 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.9e-15
Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 0

Query: 1  MCYPYPHDLQPHLVSRRE-LGVQCNWLLLQ-------AAAVARSGDGGGRSDKRQCLCSP 60
          MCYP+      H + R + L  QCNW+L Q        AA+   GD  G   KR+CLCSP
Sbjct: 1  MCYPH------HFLPRTDFLSPQCNWVLFQTVPAEETTAAIESCGDESG---KRRCLCSP 60

Query: 61 TEHPGSFRCRLHRNEYVWVGRNRMVKSESA 83
          T HPGSFRCRLHR+EYVWV R R VK+ SA
Sbjct: 61 TTHPGSFRCRLHRSEYVWVARRRTVKNVSA 81

BLAST of MS003806 vs. ExPASy TrEMBL
Match: A0A5N5J6W7 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028182 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 17 RELGVQCNWLLLQA---------AAVARSGDGGGRSDKRQCLCSPTEHPGSFRCRLHRNE 74
          R L V   WL+LQA         A VA +G  GG    ++CLCSPT HPGSFRCR HR++
Sbjct: 11 RNLVVYRRWLVLQAAETETEHAPAEVAATGGSGGAGSTKKCLCSPTRHPGSFRCRHHRSD 70

BLAST of MS003806 vs. ExPASy TrEMBL
Match: A0A6N2KPX4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113725 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09
Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 0

Query: 17 RELGVQCNWLLLQA---------AAVARSGDGGGRSDKRQCLCSPTEHPGSFRCRLHRNE 74
          R L V   WL+LQA         A VA +G  GG    ++CLCSPT HPGSFRCR HR++
Sbjct: 11 RNLVVYRRWLVLQAAETETEHAPAEVAATGGSGGAGSTKKCLCSPTRHPGSFRCRHHRSD 70

BLAST of MS003806 vs. ExPASy TrEMBL
Match: A0A061GLS8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037899 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 0

Query: 14 VSRRELGVQCNWLLLQA-----------AAVARSGDGGGRSDKRQCLCSPTEHPGSFRCR 73
          V ++ L  Q  W +LQA           A VAR   G G +  +QCLCSPT+HPGSFRCR
Sbjct: 9  VGKQGLVAQRRWFVLQASMMAAARHAPRAGVARETGGAGSTSMKQCLCSPTKHPGSFRCR 68

BLAST of MS003806 vs. TAIR 10
Match: AT1G52342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-08
Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0

Query: 28 LQAAAVARS-GDGGGRSDKRQCLCSPTEHPGSFRCRLHRNEYVWVGRNRMVKSESA 83
          ++A A  RS GDGGG   K++C+CSP++HP SF+CR H++EY W+  +    S S+
Sbjct: 31 VEATAGHRSGGDGGG--GKKKCVCSPSKHPRSFKCRYHQHEYQWLPSSSSSSSSSS 84

BLAST of MS003806 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related )

HSP 1 Score: 47.0 bits (110), Expect = 9.4e-06
Identity = 22/41 (53.66%), Postives = 25/41 (60.98%), Query Frame = 0

Query: 33 VARSGDGGG--------RSDKRQCLCSPTEHPGSFRCRLHR 66
          V R G GGG         S ++ CLC+PT HPGSFRCR HR
Sbjct: 42 VRRGGGGGGGSVGMSKSSSVRQNCLCAPTTHPGSFRCRYHR 82

BLAST of MS003806 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related )

HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05
Identity = 25/60 (41.67%), Postives = 32/60 (53.33%), Query Frame = 0

Query: 32  AVARSGDGGGRSDKRQCLCSPTEHPGSFRCRLHRNEYVW----VGRNRMVKSESASKVFS 88
           ++ R     G+S +  CLCSPT H GSFRCR HR + +     +G N  V   S S  FS
Sbjct: 48  SLKRWRSSSGKSTRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGSNLAVLLSSKSSRFS 107

BLAST of MS003806 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 0

Query: 45 KRQCLCSPTEHPGSFRCRLHRN 67
          K  CLCSPT HPGSFRCR+HR+
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHRS 62

BLAST of MS003806 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). )

HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05
Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 0

Query: 45 KRQCLCSPTEHPGSFRCRLHRN 67
          K  CLCSPT HPGSFRCR+HR+
Sbjct: 41 KTNCLCSPTTHPGSFRCRIHRS 62

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6589902.17.4e-2166.27hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN65356.19.4e-1654.02hypothetical protein Csa_020011 [Cucumis sativus][more]
KAA0046597.16.1e-1553.33hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa][more]
KAG7021840.13.1e-1168.97hypothetical protein SDJN02_15568 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAB5514276.12.2e-0953.03hypothetical protein DKX38_028182 [Salix brachista][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LZG64.5e-1654.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1[more]
A0A5A7TXE62.9e-1553.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5N5J6W71.1e-0953.03Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028182 PE=4 SV=1[more]
A0A6N2KPX41.1e-0953.03Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113725 PE=4 SV=... [more]
A0A061GLS83.2e-0949.30Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037899 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G52342.12.6e-0846.43unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G13227.19.4e-0653.66serine-rich protein-related [more]
AT5G55980.11.2e-0541.67serine-rich protein-related [more]
AT1G67910.12.1e-0577.27unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT1G67910.22.1e-0577.27unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33132:SF72OS01G0778900 PROTEINcoord: 13..74
NoneNo IPR availablePANTHERPTHR33132OSJNBB0118P14.9 PROTEINcoord: 13..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003806.1MS003806.1mRNA