MS003806 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTTACCCTTACCCACATGATTTGCAGCCTCACCTGGTAAGCCGGAGGGAGTTGGGTGTCCAATGCAACTGGCTCCTGTTGCAGGCTGCGGCAGTGGCCAGGAGTGGTGATGGTGGCGGCAGGTCGGATAAAAGACAGTGCTTGTGCTCACCGACCGAGCACCCCGGGTCATTTCGTTGCAGACTACACCGCAACGAGTACGTTTGGGTTGGCCGGAATCGGATGGTAAAAAGTGAATCGGCCAGCAAAGTATTTTCCGTCCAACGA ATGTGTTACCCTTACCCACATGATTTGCAGCCTCACCTGGTAAGCCGGAGGGAGTTGGGTGTCCAATGCAACTGGCTCCTGTTGCAGGCTGCGGCAGTGGCCAGGAGTGGTGATGGTGGCGGCAGGTCGGATAAAAGACAGTGCTTGTGCTCACCGACCGAGCACCCCGGGTCATTTCGTTGCAGACTACACCGCAACGAGTACGTTTGGGTTGGCCGGAATCGGATGGTAAAAAGTGAATCGGCCAGCAAAGTATTTTCCGTCCAACGA ATGTGTTACCCTTACCCACATGATTTGCAGCCTCACCTGGTAAGCCGGAGGGAGTTGGGTGTCCAATGCAACTGGCTCCTGTTGCAGGCTGCGGCAGTGGCCAGGAGTGGTGATGGTGGCGGCAGGTCGGATAAAAGACAGTGCTTGTGCTCACCGACCGAGCACCCCGGGTCATTTCGTTGCAGACTACACCGCAACGAGTACGTTTGGGTTGGCCGGAATCGGATGGTAAAAAGTGAATCGGCCAGCAAAGTATTTTCCGTCCAACGA MCYPYPHDLQPHLVSRRELGVQCNWLLLQAAAVARSGDGGGRSDKRQCLCSPTEHPGSFRCRLHRNEYVWVGRNRMVKSESASKVFSVQR Homology
BLAST of MS003806 vs. NCBI nr
Match: KAG6589902.1 (hypothetical protein SDJN03_15325, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 110.5 bits (275), Expect = 7.4e-21 Identity = 55/83 (66.27%), Postives = 61/83 (73.49%), Query Frame = 0
BLAST of MS003806 vs. NCBI nr
Match: KGN65356.1 (hypothetical protein Csa_020011 [Cucumis sativus]) HSP 1 Score: 93.6 bits (231), Expect = 9.4e-16 Identity = 47/87 (54.02%), Postives = 54/87 (62.07%), Query Frame = 0
BLAST of MS003806 vs. NCBI nr
Match: KAA0046597.1 (hypothetical protein E6C27_scaffold114G001380 [Cucumis melo var. makuwa]) HSP 1 Score: 90.9 bits (224), Expect = 6.1e-15 Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 0
BLAST of MS003806 vs. NCBI nr
Match: KAG7021840.1 (hypothetical protein SDJN02_15568 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 78.6 bits (192), Expect = 3.1e-11 Identity = 40/58 (68.97%), Postives = 44/58 (75.86%), Query Frame = 0
BLAST of MS003806 vs. NCBI nr
Match: KAB5514276.1 (hypothetical protein DKX38_028182 [Salix brachista]) HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09 Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 0
BLAST of MS003806 vs. ExPASy TrEMBL
Match: A0A0A0LZG6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G369510 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 4.5e-16 Identity = 47/87 (54.02%), Postives = 54/87 (62.07%), Query Frame = 0
BLAST of MS003806 vs. ExPASy TrEMBL
Match: A0A5A7TXE6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold114G001380 PE=4 SV=1) HSP 1 Score: 90.9 bits (224), Expect = 2.9e-15 Identity = 48/90 (53.33%), Postives = 56/90 (62.22%), Query Frame = 0
BLAST of MS003806 vs. ExPASy TrEMBL
Match: A0A5N5J6W7 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_028182 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09 Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 0
BLAST of MS003806 vs. ExPASy TrEMBL
Match: A0A6N2KPX4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS113725 PE=4 SV=1) HSP 1 Score: 72.4 bits (176), Expect = 1.1e-09 Identity = 35/66 (53.03%), Postives = 41/66 (62.12%), Query Frame = 0
BLAST of MS003806 vs. ExPASy TrEMBL
Match: A0A061GLS8 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_037899 PE=4 SV=1) HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09 Identity = 35/71 (49.30%), Postives = 41/71 (57.75%), Query Frame = 0
BLAST of MS003806 vs. TAIR 10
Match: AT1G52342.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 55.5 bits (132), Expect = 2.6e-08 Identity = 26/56 (46.43%), Postives = 39/56 (69.64%), Query Frame = 0
BLAST of MS003806 vs. TAIR 10
Match: AT3G13227.1 (serine-rich protein-related ) HSP 1 Score: 47.0 bits (110), Expect = 9.4e-06 Identity = 22/41 (53.66%), Postives = 25/41 (60.98%), Query Frame = 0
BLAST of MS003806 vs. TAIR 10
Match: AT5G55980.1 (serine-rich protein-related ) HSP 1 Score: 46.6 bits (109), Expect = 1.2e-05 Identity = 25/60 (41.67%), Postives = 32/60 (53.33%), Query Frame = 0
BLAST of MS003806 vs. TAIR 10
Match: AT1G67910.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast hits to 167 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05 Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 0
BLAST of MS003806 vs. TAIR 10
Match: AT1G67910.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G24577.1). ) HSP 1 Score: 45.8 bits (107), Expect = 2.1e-05 Identity = 17/22 (77.27%), Postives = 19/22 (86.36%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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