MS003643 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTAGACATGTACAACTCCGACCATAAGTCCCTCCACCACCGTCCTCCGGCCAGCCCCCGAATCTCCTTCTCCAGCGACTTCGTCGATCTCCAGCAGACCCGAACCGCCATCCCCACCGCTGCCACCTCGTCCCCGTCCCCGCCCGTGTCCTCCGATTTCGAATTCTCCGTCTCCAACTACTCGATGATGCCCGCCGACGAGCTCTTCTTTGAGGGCCGCCTTCTCCCCTTCAAGGACTCCCACTCCCACCACCACCCCTTCCATCGGCCCACCACTCTCCGCGACGAGCTTCTTCTCGAGGACGAGGACGAGGAAGAGGAAGACGACGACATCTCCCGCCGCCCCTCCAAGGGCCGGTGGAAGGGCTTCCTCGGCTTGAAAAAGTCCCACAATGCCACCAAGAAGGGCTACCAAAACGACGGCTCAAGTGGCGGCAGTGGTGGCAGCGACACCGTGGCTGACGGTAAAAGGCCGTTCGGTTGGACCACGTCACATGCCACCAAACCCAATTCATCCCAGGTTAGTTTCGATAAGAACTGTTGGATACAAATTTCAAAATAACCTTCGATATCGAGATATCTTAACTATTCAACTATGTTCATGTTAGTAATCGAAAGCTTATTTTAACGACTCGTCTCCTTTTTCAGTTAGAAAACGAAGGAGGGCCGAGTTGCAAAGACGTGGAGATTGATTTC TTAGACATGTACAACTCCGACCATAAGTCCCTCCACCACCGTCCTCCGGCCAGCCCCCGAATCTCCTTCTCCAGCGACTTCGTCGATCTCCAGCAGACCCGAACCGCCATCCCCACCGCTGCCACCTCGTCCCCGTCCCCGCCCGTGTCCTCCGATTTCGAATTCTCCGTCTCCAACTACTCGATGATGCCCGCCGACGAGCTCTTCTTTGAGGGCCGCCTTCTCCCCTTCAAGGACTCCCACTCCCACCACCACCCCTTCCATCGGCCCACCACTCTCCGCGACGAGCTTCTTCTCGAGGACGAGGACGAGGAAGAGGAAGACGACGACATCTCCCGCCGCCCCTCCAAGGGCCGGTGGAAGGGCTTCCTCGGCTTGAAAAAGTCCCACAATGCCACCAAGAAGGGCTACCAAAACGACGGCTCAAGTGGCGGCAGTGGTGGCAGCGACACCGTGGCTGACGGTAAAAGGCCGTTCGGTTGGACCACGTCACATGCCACCAAACCCAATTCATCCCAGGTTAAAAACGAAGGAGGGCCGAGTTGCAAAGACGTGGAGATTGATTTC TTAGACATGTACAACTCCGACCATAAGTCCCTCCACCACCGTCCTCCGGCCAGCCCCCGAATCTCCTTCTCCAGCGACTTCGTCGATCTCCAGCAGACCCGAACCGCCATCCCCACCGCTGCCACCTCGTCCCCGTCCCCGCCCGTGTCCTCCGATTTCGAATTCTCCGTCTCCAACTACTCGATGATGCCCGCCGACGAGCTCTTCTTTGAGGGCCGCCTTCTCCCCTTCAAGGACTCCCACTCCCACCACCACCCCTTCCATCGGCCCACCACTCTCCGCGACGAGCTTCTTCTCGAGGACGAGGACGAGGAAGAGGAAGACGACGACATCTCCCGCCGCCCCTCCAAGGGCCGGTGGAAGGGCTTCCTCGGCTTGAAAAAGTCCCACAATGCCACCAAGAAGGGCTACCAAAACGACGGCTCAAGTGGCGGCAGTGGTGGCAGCGACACCGTGGCTGACGGTAAAAGGCCGTTCGGTTGGACCACGTCACATGCCACCAAACCCAATTCATCCCAGGTTAAAAACGAAGGAGGGCCGAGTTGCAAAGACGTGGAGATTGATTTC LDMYNSDHKSLHHRPPASPRISFSSDFVDLQQTRTAIPTAATSSPSPPVSSDFEFSVSNYSMMPADELFFEGRLLPFKDSHSHHHPFHRPTTLRDELLLEDEDEEEEDDDISRRPSKGRWKGFLGLKKSHNATKKGYQNDGSSGGSGGSDTVADGKRPFGWTTSHATKPNSSQVKNEGGPSCKDVEIDF Homology
BLAST of MS003643 vs. NCBI nr
Match: XP_022149537.1 (uncharacterized protein LOC111017947 [Momordica charantia]) HSP 1 Score: 376.3 bits (965), Expect = 1.5e-100 Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0
BLAST of MS003643 vs. NCBI nr
Match: XP_022928078.1 (uncharacterized protein LOC111434969 [Cucurbita moschata] >XP_022954346.1 uncharacterized protein LOC111456619 [Cucurbita moschata] >KAG6571431.1 hypothetical protein SDJN03_30346, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 218.8 bits (556), Expect = 4.1e-53 Identity = 120/189 (63.49%), Postives = 139/189 (73.54%), Query Frame = 0
BLAST of MS003643 vs. NCBI nr
Match: XP_023513000.1 (uncharacterized protein LOC111777572 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 216.1 bits (549), Expect = 2.6e-52 Identity = 119/188 (63.30%), Postives = 137/188 (72.87%), Query Frame = 0
BLAST of MS003643 vs. NCBI nr
Match: XP_008457833.1 (PREDICTED: uncharacterized protein LOC103497420 [Cucumis melo] >KAA0045816.1 uncharacterized protein E6C27_scaffold243G003410 [Cucumis melo var. makuwa] >TYJ99465.1 uncharacterized protein E5676_scaffold123G00280 [Cucumis melo var. makuwa]) HSP 1 Score: 211.8 bits (538), Expect = 5.0e-51 Identity = 130/200 (65.00%), Postives = 154/200 (77.00%), Query Frame = 0
BLAST of MS003643 vs. NCBI nr
Match: XP_022971706.1 (uncharacterized protein LOC111470374 [Cucurbita maxima]) HSP 1 Score: 209.5 bits (532), Expect = 2.5e-50 Identity = 115/188 (61.17%), Postives = 136/188 (72.34%), Query Frame = 0
BLAST of MS003643 vs. ExPASy TrEMBL
Match: A0A6J1D890 (uncharacterized protein LOC111017947 OS=Momordica charantia OX=3673 GN=LOC111017947 PE=4 SV=1) HSP 1 Score: 376.3 bits (965), Expect = 7.4e-101 Identity = 185/187 (98.93%), Postives = 187/187 (100.00%), Query Frame = 0
BLAST of MS003643 vs. ExPASy TrEMBL
Match: A0A6J1EMU8 (uncharacterized protein LOC111434969 OS=Cucurbita moschata OX=3662 GN=LOC111434969 PE=4 SV=1) HSP 1 Score: 218.8 bits (556), Expect = 2.0e-53 Identity = 120/189 (63.49%), Postives = 139/189 (73.54%), Query Frame = 0
BLAST of MS003643 vs. ExPASy TrEMBL
Match: A0A5A7TUK7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00280 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 2.4e-51 Identity = 130/200 (65.00%), Postives = 154/200 (77.00%), Query Frame = 0
BLAST of MS003643 vs. ExPASy TrEMBL
Match: A0A1S3C600 (uncharacterized protein LOC103497420 OS=Cucumis melo OX=3656 GN=LOC103497420 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 2.4e-51 Identity = 130/200 (65.00%), Postives = 154/200 (77.00%), Query Frame = 0
BLAST of MS003643 vs. ExPASy TrEMBL
Match: A0A6J1I403 (uncharacterized protein LOC111470374 OS=Cucurbita maxima OX=3661 GN=LOC111470374 PE=4 SV=1) HSP 1 Score: 209.5 bits (532), Expect = 1.2e-50 Identity = 115/188 (61.17%), Postives = 136/188 (72.34%), Query Frame = 0
BLAST of MS003643 vs. TAIR 10
Match: AT5G66800.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G50640.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). ) HSP 1 Score: 100.9 bits (250), Expect = 1.2e-21 Identity = 66/153 (43.14%), Postives = 90/153 (58.82%), Query Frame = 0
BLAST of MS003643 vs. TAIR 10
Match: AT3G50640.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66800.1); Has 67 Blast hits to 67 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 80.1 bits (196), Expect = 2.1e-15 Identity = 54/137 (39.42%), Postives = 85/137 (62.04%), Query Frame = 0
BLAST of MS003643 vs. TAIR 10
Match: AT4G34419.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G19200.1). ) HSP 1 Score: 63.2 bits (152), Expect = 2.7e-10 Identity = 51/127 (40.16%), Postives = 62/127 (48.82%), Query Frame = 0
BLAST of MS003643 vs. TAIR 10
Match: AT5G19340.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G05980.1); Has 1000 Blast hits to 906 proteins in 61 species: Archae - 0; Bacteria - 4; Metazoa - 62; Fungi - 36; Plants - 128; Viruses - 4; Other Eukaryotes - 766 (source: NCBI BLink). ) HSP 1 Score: 43.9 bits (102), Expect = 1.7e-04 Identity = 46/157 (29.30%), Postives = 62/157 (39.49%), Query Frame = 0
BLAST of MS003643 vs. TAIR 10
Match: AT3G05980.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19340.1); Has 202 Blast hits to 202 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 39; Fungi - 4; Plants - 148; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). ) HSP 1 Score: 41.6 bits (96), Expect = 8.3e-04 Identity = 51/150 (34.00%), Postives = 60/150 (40.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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