MS003613 (gene) Bitter gourd (TR) v1

Overview
NameMS003613
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionVQ domain-containing protein
Locationscaffold963: 85642 .. 85926 (-)
RNA-Seq ExpressionMS003613
SyntenyMS003613
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCTCACTCCTCTTCTTCTTCGCCGGCGGTCAAGCCATGGAACAGGGCCGTGGCGCCGCTGCCGCCGACTCCGCCGCAGGTTTACAAGGTGAACCCCGTCGACTTTCGGGACGTGGTCCAGAAGCTAACTGCGGCGCCCGAGTTCCAGGACCGCCGCCTCCAAGCCATGCCTGCCCCCCGCCCCAGCCCGCCCCCGGGTTCCGCCGCTCGCACGGATTTTTCTGGCGAGGGGGCTGTTTTTTACTATGGGTATCCTGGAGTTGGATTCTCTGAAAGATAT

mRNA sequence

ATGGAGCCTCACTCCTCTTCTTCTTCGCCGGCGGTCAAGCCATGGAACAGGGCCGTGGCGCCGCTGCCGCCGACTCCGCCGCAGGTTTACAAGGTGAACCCCGTCGACTTTCGGGACGTGGTCCAGAAGCTAACTGCGGCGCCCGAGTTCCAGGACCGCCGCCTCCAAGCCATGCCTGCCCCCCGCCCCAGCCCGCCCCCGGGTTCCGCCGCTCGCACGGATTTTTCTGGCGAGGGGGCTGTTTTTTACTATGGGTATCCTGGAGTTGGATTCTCTGAAAGATAT

Coding sequence (CDS)

ATGGAGCCTCACTCCTCTTCTTCTTCGCCGGCGGTCAAGCCATGGAACAGGGCCGTGGCGCCGCTGCCGCCGACTCCGCCGCAGGTTTACAAGGTGAACCCCGTCGACTTTCGGGACGTGGTCCAGAAGCTAACTGCGGCGCCCGAGTTCCAGGACCGCCGCCTCCAAGCCATGCCTGCCCCCCGCCCCAGCCCGCCCCCGGGTTCCGCCGCTCGCACGGATTTTTCTGGCGAGGGGGCTGTTTTTTACTATGGGTATCCTGGAGTTGGATTCTCTGAAAGATAT

Protein sequence

MEPHSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPGSAARTDFSGEGAVFYYGYPGVGFSERY
Homology
BLAST of MS003613 vs. NCBI nr
Match: XP_022149539.1 (VQ motif-containing protein 29 [Momordica charantia])

HSP 1 Score: 189.5 bits (480), Expect = 1.3e-44
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MEPHSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPA 60
          MEPHSSSSSPAVKPWNRAVAPLPPTPPQ+YKVNPVDFRDVVQKLTAAPEFQDRRLQAMPA
Sbjct: 1  MEPHSSSSSPAVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPA 60

Query: 61 PRPSPPPGSAARTDFSGEGAVFYYGYPGVGFSERY 96
          PRPSPPPGSAA TDFSGEGAV YYGYPGVGFSERY
Sbjct: 61 PRPSPPPGSAACTDFSGEGAVIYYGYPGVGFSERY 95

BLAST of MS003613 vs. NCBI nr
Match: KAA0045761.1 (VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-containing protein 29 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 60/104 (57.69%), Postives = 68/104 (65.38%), Query Frame = 0

Query: 1   MEPHSSS------SSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRR 60
           MEPHS S       +   K   +AVAP  PTPPQVYKV+P++FRDVVQKLTAAPEFQDRR
Sbjct: 1   MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60

Query: 61  LQAMPAPRPSPPPGSAARTDFSGE---GAVFYYGYPGVGFSERY 96
           LQAMP PRP+    S    D SGE   G V Y+G+     SERY
Sbjct: 61  LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYHGFFLGQSSERY 104

BLAST of MS003613 vs. NCBI nr
Match: KAE8651906.1 (hypothetical protein Csa_006780 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 2.2e-15
Identity = 51/85 (60.00%), Postives = 59/85 (69.41%), Query Frame = 0

Query: 1  MEPHSSS------SSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRR 60
          MEPHS S       +P  K   + VAP  P+PPQVYKV+P++FRDVVQKLTAAP+FQDRR
Sbjct: 1  MEPHSFSFYYMDQGAPVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRR 60

Query: 61 LQAMPAPRPSPPPGSAARTDFSGEG 80
          LQAMP PRP     S+   D SGEG
Sbjct: 61 LQAMPPPRPDLADQSSRPRDLSGEG 85

BLAST of MS003613 vs. NCBI nr
Match: KAA8522582.1 (hypothetical protein F0562_013057 [Nyssa sinensis])

HSP 1 Score: 85.9 bits (211), Expect = 2.1e-13
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 0

Query: 4   HSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRP 63
           HS    P  KPW + +APLPPTPP++YKV+ V+FR+VVQKLTAAPEFQ RRLQ++     
Sbjct: 40  HSVRKLPGAKPWKKPIAPLPPTPPRIYKVDSVNFREVVQKLTAAPEFQSRRLQSV----- 99

Query: 64  SPPPGSAARTDFS 77
           +PPP + + T FS
Sbjct: 100 APPPLNLSTTTFS 107

BLAST of MS003613 vs. NCBI nr
Match: KAG6605217.1 (hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.0 bits (193), Expect = 2.5e-11
Identity = 47/91 (51.65%), Postives = 58/91 (63.74%), Query Frame = 0

Query: 1  MEPHSSSSS----------------PAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKL 60
          MEPHS SSS                 + +   +AVAP PP PP+VYKV P++FRDVVQKL
Sbjct: 1  MEPHSYSSSSSSFSFYYSDPDGVHKASSRSPKKAVAPPPPMPPRVYKVEPIEFRDVVQKL 60

Query: 61 TAAPEFQDRRLQAMPAPRP---SPPPGSAAR 73
          T+ PE+ D RL+AMPAPRP   +PPP S+ R
Sbjct: 61 TSPPEYLDPRLKAMPAPRPNLSNPPPCSSRR 91

BLAST of MS003613 vs. ExPASy TrEMBL
Match: A0A6J1D7B4 (VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 6.4e-45
Identity = 92/95 (96.84%), Postives = 93/95 (97.89%), Query Frame = 0

Query: 1  MEPHSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPA 60
          MEPHSSSSSPAVKPWNRAVAPLPPTPPQ+YKVNPVDFRDVVQKLTAAPEFQDRRLQAMPA
Sbjct: 1  MEPHSSSSSPAVKPWNRAVAPLPPTPPQIYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPA 60

Query: 61 PRPSPPPGSAARTDFSGEGAVFYYGYPGVGFSERY 96
          PRPSPPPGSAA TDFSGEGAV YYGYPGVGFSERY
Sbjct: 61 PRPSPPPGSAACTDFSGEGAVIYYGYPGVGFSERY 95

BLAST of MS003613 vs. ExPASy TrEMBL
Match: A0A5A7TW54 (VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00880 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 5.7e-17
Identity = 60/104 (57.69%), Postives = 68/104 (65.38%), Query Frame = 0

Query: 1   MEPHSSS------SSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRR 60
           MEPHS S       +   K   +AVAP  PTPPQVYKV+P++FRDVVQKLTAAPEFQDRR
Sbjct: 1   MEPHSFSFYYTDQGASVQKTGKKAVAPPRPTPPQVYKVDPINFRDVVQKLTAAPEFQDRR 60

Query: 61  LQAMPAPRPSPPPGSAARTDFSGE---GAVFYYGYPGVGFSERY 96
           LQAMP PRP+    S    D SGE   G V Y+G+     SERY
Sbjct: 61  LQAMPPPRPNVADQSRRPRDSSGEGEGGVVSYHGFFLGQSSERY 104

BLAST of MS003613 vs. ExPASy TrEMBL
Match: A0A0A0LPS3 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.4e-14
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 9  SPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSPPPG 68
          +P  K   + VAP  P+PPQVYKV+P++FRDVVQKLTAAP+FQDRRLQAMP PRP     
Sbjct: 5  APVQKTGKKPVAPPRPSPPQVYKVDPINFRDVVQKLTAAPQFQDRRLQAMPPPRPDLADQ 64

Query: 69 SAARTDFSGEG 80
          S+   D SGEG
Sbjct: 65 SSRPRDLSGEG 75

BLAST of MS003613 vs. ExPASy TrEMBL
Match: A0A5J4ZYQ3 (VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.0e-13
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 0

Query: 4   HSSSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRP 63
           HS    P  KPW + +APLPPTPP++YKV+ V+FR+VVQKLTAAPEFQ RRLQ++     
Sbjct: 40  HSVRKLPGAKPWKKPIAPLPPTPPRIYKVDSVNFREVVQKLTAAPEFQSRRLQSV----- 99

Query: 64  SPPPGSAARTDFS 77
           +PPP + + T FS
Sbjct: 100 APPPLNLSTTTFS 107

BLAST of MS003613 vs. ExPASy TrEMBL
Match: A0A7J7DLN8 (VQ domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW05G00002 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.1e-11
Identity = 37/62 (59.68%), Postives = 49/62 (79.03%), Query Frame = 0

Query: 6  SSSSPAVKPWNRAVAPLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMPAPRPSP 65
          S   P +KPW + +APLPPTPP+VYKV+PV+FRD+VQKLT+APEFQ +RL+ +     +P
Sbjct: 27 SVRKPQLKPWKKPIAPLPPTPPRVYKVDPVNFRDLVQKLTSAPEFQTQRLRKI-----AP 83

Query: 66 PP 68
          PP
Sbjct: 87 PP 83

BLAST of MS003613 vs. TAIR 10
Match: AT4G37710.1 (VQ motif-containing protein )

HSP 1 Score: 41.2 bits (95), Expect = 5.4e-04
Identity = 26/58 (44.83%), Postives = 36/58 (62.07%), Query Frame = 0

Query: 4  HSSSSSPAVKPWNRAV--APLPPTPPQVYKVNPVDFRDVVQKLTAAPEFQDRRLQAMP 60
          HS+   P+ KP  R    +PL P  P VY+V PV+F+ +VQ+LT APE +   +QA P
Sbjct: 32 HSTRKQPS-KPLKRPAISSPLNPMHPHVYRVEPVNFKVLVQRLTGAPEHE--TVQAKP 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149539.11.3e-4496.84VQ motif-containing protein 29 [Momordica charantia][more]
KAA0045761.11.2e-1657.69VQ motif-containing protein 29 [Cucumis melo var. makuwa] >TYJ99521.1 VQ motif-c... [more]
KAE8651906.12.2e-1560.00hypothetical protein Csa_006780 [Cucumis sativus][more]
KAA8522582.12.1e-1357.53hypothetical protein F0562_013057 [Nyssa sinensis][more]
KAG6605217.12.5e-1151.65hypothetical protein SDJN03_02534, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D7B46.4e-4596.84VQ motif-containing protein 29 OS=Momordica charantia OX=3673 GN=LOC111017949 PE... [more]
A0A5A7TW545.7e-1757.69VQ motif-containing protein 29 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A0A0LPS33.4e-1463.38VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G271490 PE=4 SV=... [more]
A0A5J4ZYQ31.0e-1357.53VQ domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_013057 PE=4 SV... [more]
A0A7J7DLN82.1e-1159.68VQ domain-containing protein OS=Tripterygium wilfordii OX=458696 GN=HS088_TW05G0... [more]
Match NameE-valueIdentityDescription
AT4G37710.15.4e-0444.83VQ motif-containing protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 25..45
e-value: 3.0E-8
score: 33.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 48..74
NoneNo IPR availablePANTHERPTHR34794:SF1EXPRESSED PROTEINcoord: 10..64
IPR039610VQ motif-containing protein 29PANTHERPTHR34794EXPRESSED PROTEINcoord: 10..64

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003613.1MS003613.1mRNA