MS003498 (gene) Bitter gourd (TR) v1

Overview


Name	MS003498
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Protein of unknown function (DUF 3339)
Location	scaffold234: 3149162 .. 3149368 (+)
RNA-Seq Expression	MS003498
Synteny	MS003498

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTGGGGGCCGGTGCTCATCGCGGTAGTACTGTTCGTGGTTCTGAGCCCGGGAGTGCTGTTTCAACTCCCCGGAAAGGGCCGAGTGATCGAGTTCGTGAACCTGAAAACAAGCGCCATCTCCGTCTTCGTTCACACTCTCATCTTCTTCGGCCTCATCACTATTTTTCTTATTGCTATCGGTGTTCACATCACTACTGGT

mRNA sequence

ATGGCGGATTGGGGGCCGGTGCTCATCGCGGTAGTACTGTTCGTGGTTCTGAGCCCGGGAGTGCTGTTTCAACTCCCCGGAAAGGGCCGAGTGATCGAGTTCGTGAACCTGAAAACAAGCGCCATCTCCGTCTTCGTTCACACTCTCATCTTCTTCGGCCTCATCACTATTTTTCTTATTGCTATCGGTGTTCACATCACTACTGGT

Coding sequence (CDS)

ATGGCGGATTGGGGGCCGGTGCTCATCGCGGTAGTACTGTTCGTGGTTCTGAGCCCGGGAGTGCTGTTTCAACTCCCCGGAAAGGGCCGAGTGATCGAGTTCGTGAACCTGAAAACAAGCGCCATCTCCGTCTTCGTTCACACTCTCATCTTCTTCGGCCTCATCACTATTTTTCTTATTGCTATCGGTGTTCACATCACTACTGGT

Protein sequence

MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLIAIGVHITTG

Homology

[Close]

BLAST of MS003498 vs. NCBI nr
Match: XP_022134280.1 (uncharacterized protein LOC111006581 [Momordica charantia])

HSP 1 Score: 129.0 bits (323), Expect = 1.5e-26
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          MADWGPVLIAVVLFVVLSPGVLFQLPGKGRV+EFVNLKTSAISVFVHTLIFFGLITIFLI
Sbjct: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVVEFVNLKTSAISVFVHTLIFFGLITIFLI 60

Query: 61 AIGVHITTG 70
          AIGVHITTG
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of MS003498 vs. NCBI nr
Match: OAY25532.1 (hypothetical protein MANES_17G102200v8 [Manihot esculenta])

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          MADWGPV++AVVLFVVLSPGVLFQLPGKGRV+EF N++TS  SVFVHT+IFFGLITIFLI
Sbjct: 1  MADWGPVVVAVVLFVVLSPGVLFQLPGKGRVVEFANMQTSGASVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHITTG 70
          AIG+HITTG
Sbjct: 61 AIGIHITTG 69

[Close]

BLAST of MS003498 vs. NCBI nr
Match: XP_037491426.1 (uncharacterized protein LOC105632430 [Jatropha curcas])

HSP 1 Score: 118.2 bits (295), Expect = 2.7e-23
Identity = 60/69 (86.96%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          MADWGPV+IAVVLFVVLSPGVLFQLPGK RV+EFVN++TS +SV VHT+IFFGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGKSRVVEFVNMQTSGVSVLVHTIIFFGLITIFLI 60

Query: 61 AIGVHITTG 70
          AIGVHITTG
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of MS003498 vs. NCBI nr
Match: XP_002509498.1 (uncharacterized protein LOC8271433 [Ricinus communis] >EEF50885.1 conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 117.9 bits (294), Expect = 3.6e-23
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          MADWGPV+IAVVLFVVLSPGVLFQLPG  RV+EF NL+TS +SVFVHT+IFFGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGNSRVVEFANLQTSGVSVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHITTG 70
          AIGVHITTG
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of MS003498 vs. NCBI nr
Match: XP_021648773.1 (uncharacterized protein LOC110641381 [Hevea brasiliensis])

HSP 1 Score: 116.7 bits (291), Expect = 7.9e-23
Identity = 58/69 (84.06%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          MADWGPV++AVVLFVVLSPG+LFQLPGKGRV+EF N++TS  SVFVHT+IFFGLITIFLI
Sbjct: 1  MADWGPVVVAVVLFVVLSPGLLFQLPGKGRVVEFGNMQTSGASVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHITTG 70
          AIG+HITTG
Sbjct: 61 AIGIHITTG 69

[Close]

BLAST of MS003498 vs. ExPASy TrEMBL
Match: A0A6J1BXW3 (uncharacterized protein LOC111006581 OS=Momordica charantia OX=3673 GN=LOC111006581 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.5e-27
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          MADWGPVLIAVVLFVVLSPGVLFQLPGKGRV+EFVNLKTSAISVFVHTLIFFGLITIFLI
Sbjct: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVVEFVNLKTSAISVFVHTLIFFGLITIFLI 60

Query: 61 AIGVHITTG 70
          AIGVHITTG
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of MS003498 vs. ExPASy TrEMBL
Match: A0A2C9U7J2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102200 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 7.7e-24
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          MADWGPV++AVVLFVVLSPGVLFQLPGKGRV+EF N++TS  SVFVHT+IFFGLITIFLI
Sbjct: 1  MADWGPVVVAVVLFVVLSPGVLFQLPGKGRVVEFANMQTSGASVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHITTG 70
          AIG+HITTG
Sbjct: 61 AIGIHITTG 69

[Close]

BLAST of MS003498 vs. ExPASy TrEMBL
Match: B9RBG4 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1676560 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.7e-23
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          MADWGPV+IAVVLFVVLSPGVLFQLPG  RV+EF NL+TS +SVFVHT+IFFGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVVLSPGVLFQLPGNSRVVEFANLQTSGVSVFVHTIIFFGLITIFLI 60

Query: 61 AIGVHITTG 70
          AIGVHITTG
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of MS003498 vs. ExPASy TrEMBL
Match: A0A165WN85 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015109 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-22
Identity = 56/69 (81.16%), Postives = 64/69 (92.75%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          MADWGPV+IAVVLFV+L+PG+LFQLPGK R IEF N +TS +S+FVHT+IFFGLITIFLI
Sbjct: 1  MADWGPVVIAVVLFVLLTPGLLFQLPGKSRAIEFANFQTSGVSIFVHTIIFFGLITIFLI 60

Query: 61 AIGVHITTG 70
          AIGVHITTG
Sbjct: 61 AIGVHITTG 69

[Close]

BLAST of MS003498 vs. ExPASy TrEMBL
Match: A0A1S3B351 (uncharacterized protein LOC103485470 OS=Cucumis melo OX=3656 GN=LOC103485470 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.3e-22
Identity = 56/69 (81.16%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          M DWGPVLIAV+LFVVLSPGVLFQLPG  RV++FVN++TSAISVFVH++IFFGLITIF+I
Sbjct: 1  MGDWGPVLIAVILFVVLSPGVLFQLPGNDRVVQFVNMQTSAISVFVHSIIFFGLITIFVI 60

Query: 61 AIGVHITTG 70
          AIGVHI++G
Sbjct: 61 AIGVHISSG 69

[Close]

BLAST of MS003498 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-21
Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          MADWGPVLIAV+LFVVLSPG+LFQ+P  GRV+EF N++TS  S+ VH +IFFGLITIF I
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIGVHITTG 70
          AI VHI +G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of MS003498 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 98.6 bits (244), Expect = 2.1e-21
Identity = 47/69 (68.12%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          MADWGPV++AV+LFV+L+PG+LFQ+P +GRV+EF N++TS  S+ VHT+IFFGLITIF I
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIGVHITTG 70
          AI +HI TG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of MS003498 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 87.4 bits (215), Expect = 4.8e-18
Identity = 39/69 (56.52%), Postives = 58/69 (84.06%), Query Frame = 0


Query: 1  MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
          M+DWGPVL+ V+LFV+L+PG+LFQLPG+ + +EF N +TSA+SV VH+L++F L+ +FL+
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIGVHITTG 70
          A+ +HI  G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of MS003498 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 84.0 bits (206), Expect = 5.3e-17
Identity = 42/65 (64.62%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 2  ADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLIA 61
          ADWGPV +AVVLFVVLSPG+LFQLP + RV+E  N+ TS IS+ VH ++FF +ITI +IA
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 IGVHI 67
          I +HI
Sbjct: 64 IQIHI 68

[Close]

BLAST of MS003498 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 83.6 bits (205), Expect = 6.9e-17
Identity = 40/69 (57.97%), Postives = 53/69 (76.81%), Query Frame = 0


Query: 1   MADWGPVLIAVVLFVVLSPGVLFQLPGKGRVIEFVNLKTSAISVFVHTLIFFGLITIFLI 60
           MADW PVL+ VVLFV+LSPG+LF LPG  R ++F  LKT+  ++ VHTLIFF + TI ++
Sbjct: 74  MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133

Query: 61  AIGVHITTG 70
           A+ +HI TG
Sbjct: 134 ALNLHIYTG 142

The following BLAST results are available for this feature:

BLAST of MS003498 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134280.1	1.5e-26	98.55	uncharacterized protein LOC111006581 [Momordica charantia]	[more]
OAY25532.1	1.6e-23	85.51	hypothetical protein MANES_17G102200v8 [Manihot esculenta]	[more]
XP_037491426.1	2.7e-23	86.96	uncharacterized protein LOC105632430 [Jatropha curcas]	[more]
XP_002509498.1	3.6e-23	86.96	uncharacterized protein LOC8271433 [Ricinus communis] >EEF50885.1 conserved hypo...	[more]
XP_021648773.1	7.9e-23	84.06	uncharacterized protein LOC110641381 [Hevea brasiliensis]	[more]

BLAST of MS003498 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS003498 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BXW3	7.5e-27	98.55	uncharacterized protein LOC111006581 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A2C9U7J2	7.7e-24	85.51	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G102200 PE=4 SV=...	[more]
B9RBG4	1.7e-23	86.96	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1676560 PE=4 SV=1	[more]
A0A165WN85	4.3e-22	81.16	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_015109 ...	[more]
A0A1S3B351	7.3e-22	81.16	uncharacterized protein LOC103485470 OS=Cucumis melo OX=3656 GN=LOC103485470 PE=...	[more]

BLAST of MS003498 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63500.1	1.2e-21	72.46	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	2.1e-21	68.12	Protein of unknown function (DUF 3339)	[more]
AT5G08391.1	4.8e-18	56.52	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	5.3e-17	64.62	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	6.9e-17	57.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..66 e-value: 3.0E-33 score: 113.8
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF69	SUBFAMILY NOT NAMED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003498.1	MS003498.1	mRNA