MS003434 (gene) Bitter gourd (TR) v1

Overview


Name	MS003434
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	AAI domain-containing protein
Location	scaffold234: 2824129 .. 2824497 (+)
RNA-Seq Expression	MS003434
Synteny	MS003434

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCCCAAACAGATCAATTTGCTTCCTATTATTTTTTGCTCTGCTTTTCATTAGTGCAAGATGTGGTTATGTTCGTCCTAATAGCGAGTGTGCCCCATCTTCACCTGAAAGAGAGGCATACAAAATGCTTCCTTGTATGGCTGCTTCCAAAGATCCTTATTATCCAGTTTCCCAAAAATGTTGCGATCAAGTGAGGAAGCTAGGCCAGAGCACAAGCTGTCATTGTGCAGTAATGTTGTCCAAAACAGCCCAAATGGTTGGGTCTAAGCCCGAAGTTGCCATTACAATTCCCAAACGTTGTGACATTGCTGAACGCCCTGTTGGCTATAACTGCGGGGGTAATTCATTCATTTATTTGTTGACG

mRNA sequence

ATGGAGTCCCCAAACAGATCAATTTGCTTCCTATTATTTTTTGCTCTGCTTTTCATTAGTGCAAGATGTGGTTATGTTCGTCCTAATAGCGAGTGTGCCCCATCTTCACCTGAAAGAGAGGCATACAAAATGCTTCCTTGTATGGCTGCTTCCAAAGATCCTTATTATCCAGTTTCCCAAAAATGTTGCGATCAAGTGAGGAAGCTAGGCCAGAGCACAAGCTGTCATTGTGCAGTAATGTTGTCCAAAACAGCCCAAATGGTTGGGTCTAAGCCCGAAGTTGCCATTACAATTCCCAAACGTTGTGACATTGCTGAACGCCCTGTTGGCTATAACTGCGGGGGTAATTCATTCATTTATTTGTTGACG

Coding sequence (CDS)

ATGGAGTCCCCAAACAGATCAATTTGCTTCCTATTATTTTTTGCTCTGCTTTTCATTAGTGCAAGATGTGGTTATGTTCGTCCTAATAGCGAGTGTGCCCCATCTTCACCTGAAAGAGAGGCATACAAAATGCTTCCTTGTATGGCTGCTTCCAAAGATCCTTATTATCCAGTTTCCCAAAAATGTTGCGATCAAGTGAGGAAGCTAGGCCAGAGCACAAGCTGTCATTGTGCAGTAATGTTGTCCAAAACAGCCCAAATGGTTGGGTCTAAGCCCGAAGTTGCCATTACAATTCCCAAACGTTGTGACATTGCTGAACGCCCTGTTGGCTATAACTGCGGGGGTAATTCATTCATTTATTTGTTGACG

Protein sequence

MESPNRSICFLLFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQKCCDQVRKLGQSTSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGGNSFIYLLT

Homology

[Close]

BLAST of MS003434 vs. NCBI nr
Match: XP_022134464.1 (uncharacterized protein LOC111006702 [Momordica charantia])

HSP 1 Score: 240.7 bits (613), Expect = 6.5e-60
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MESPNRSICFLLFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQ 60
           MESPNRSICFLLFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQ
Sbjct: 1   MESPNRSICFLLFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQ 60

Query: 61  KCCDQVRKLGQSTSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG 116
           KCCDQVRKLGQSTSC CAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG
Sbjct: 61  KCCDQVRKLGQSTSCLCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG 115

[Close]

BLAST of MS003434 vs. NCBI nr
Match: XP_023515889.1 (uncharacterized protein LOC111779894 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182.2 bits (461), Expect = 2.7e-42
Identity = 85/116 (73.28%), Postives = 97/116 (83.62%), Query Frame = 0


Query: 1   MESPNRSICFLLFFALLFISARCGYV-RPNSECAPSSPEREAYKMLPCMAASKDPYYPVS 60
           MES  +    LLF AL  ++ARC Y  +   ECAPS+PEREA+KM+PC+AASKDPYYPVS
Sbjct: 1   MESLKKYTSLLLFLALFLVTARCDYYGQQRGECAPSNPEREAFKMMPCLAASKDPYYPVS 60

Query: 61  QKCCDQVRKLGQSTSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG 116
            +CCDQVRKLGQSTSC CAVMLS TA MVG+KPE+AITIPKRC+IAERPVGYNCGG
Sbjct: 61  HRCCDQVRKLGQSTSCLCAVMLSNTAAMVGAKPEIAITIPKRCNIAERPVGYNCGG 116

[Close]

BLAST of MS003434 vs. NCBI nr
Match: XP_022962642.1 (uncharacterized protein LOC111463057 [Cucurbita moschata] >KAG6602641.1 hypothetical protein SDJN03_07874, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 176.8 bits (447), Expect = 1.2e-40
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 1   MESPNRSICFLLFFALLFISARCGYV-RPNSECAPSSPEREAYKMLPCMAASKDPYYPVS 60
           MES  +    LLF AL  ++AR  Y  +   ECAPS+PEREA+KM+PC++ASKDPYYPVS
Sbjct: 1   MESFKKYTSLLLFLALFLVTARSDYYGQQRGECAPSNPEREAFKMMPCLSASKDPYYPVS 60

Query: 61  QKCCDQVRKLGQSTSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG 116
            +CCDQVRKLGQSTSC CAVMLS TA MVG+KPE+AITIPKRC+IAERPVGYNCGG
Sbjct: 61  HRCCDQVRKLGQSTSCLCAVMLSNTAAMVGAKPEIAITIPKRCNIAERPVGYNCGG 116

[Close]

BLAST of MS003434 vs. NCBI nr
Match: XP_038886380.1 (uncharacterized protein LOC120076581 [Benincasa hispida])

HSP 1 Score: 172.6 bits (436), Expect = 2.2e-39
Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 11  LLFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQKCCDQVRKLG 70
           +LF A+  +  + G+V+   ECAPS+PEREA+KM+PCM ASKD  YPVSQ+CCDQVRKLG
Sbjct: 12  VLFIAMFIVGTKSGHVQSRGECAPSNPEREAFKMMPCMGASKDENYPVSQRCCDQVRKLG 71

Query: 71  QSTSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG 116
           QSTSC CAVMLSKTA++VGSKPE+AITIPKRC+I ERPVGYNCGG
Sbjct: 72  QSTSCLCAVMLSKTAELVGSKPEIAITIPKRCNILERPVGYNCGG 116

[Close]

BLAST of MS003434 vs. NCBI nr
Match: XP_022990565.1 (uncharacterized protein LOC111487407 [Cucurbita maxima])

HSP 1 Score: 169.1 bits (427), Expect = 2.4e-38
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MESPNRSICFLLFFALLFISARCGYV-RPNSECAPSSPEREAYKMLPCMAASKDPYYPVS 60
           MES  +    LLF  L  ++AR  Y  +   ECAPS+PEREA+KM+PC++ASKDPY PVS
Sbjct: 1   MESLKKYTSLLLFLVLFLVTARSDYYGQQRGECAPSNPEREAFKMMPCLSASKDPYSPVS 60

Query: 61  QKCCDQVRKLGQSTSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG 116
            +CCDQVRKLGQSTSC CAVMLS TA MVG+KPE+AITIPKRC+IAERPVGYNC G
Sbjct: 61  HRCCDQVRKLGQSTSCLCAVMLSNTAAMVGAKPEIAITIPKRCNIAERPVGYNCEG 116

[Close]

BLAST of MS003434 vs. ExPASy TrEMBL
Match: A0A6J1BYT2 (uncharacterized protein LOC111006702 OS=Momordica charantia OX=3673 GN=LOC111006702 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.1e-60
Identity = 114/115 (99.13%), Postives = 114/115 (99.13%), Query Frame = 0


Query: 1   MESPNRSICFLLFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQ 60
           MESPNRSICFLLFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQ
Sbjct: 1   MESPNRSICFLLFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQ 60

Query: 61  KCCDQVRKLGQSTSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG 116
           KCCDQVRKLGQSTSC CAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG
Sbjct: 61  KCCDQVRKLGQSTSCLCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG 115

[Close]

BLAST of MS003434 vs. ExPASy TrEMBL
Match: A0A6J1HD74 (uncharacterized protein LOC111463057 OS=Cucurbita moschata OX=3662 GN=LOC111463057 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.6e-41
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 1   MESPNRSICFLLFFALLFISARCGYV-RPNSECAPSSPEREAYKMLPCMAASKDPYYPVS 60
           MES  +    LLF AL  ++AR  Y  +   ECAPS+PEREA+KM+PC++ASKDPYYPVS
Sbjct: 1   MESFKKYTSLLLFLALFLVTARSDYYGQQRGECAPSNPEREAFKMMPCLSASKDPYYPVS 60

Query: 61  QKCCDQVRKLGQSTSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG 116
            +CCDQVRKLGQSTSC CAVMLS TA MVG+KPE+AITIPKRC+IAERPVGYNCGG
Sbjct: 61  HRCCDQVRKLGQSTSCLCAVMLSNTAAMVGAKPEIAITIPKRCNIAERPVGYNCGG 116

[Close]

BLAST of MS003434 vs. ExPASy TrEMBL
Match: A0A6J1JQF7 (uncharacterized protein LOC111487407 OS=Cucurbita maxima OX=3661 GN=LOC111487407 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 80/116 (68.97%), Postives = 93/116 (80.17%), Query Frame = 0


Query: 1   MESPNRSICFLLFFALLFISARCGYV-RPNSECAPSSPEREAYKMLPCMAASKDPYYPVS 60
           MES  +    LLF  L  ++AR  Y  +   ECAPS+PEREA+KM+PC++ASKDPY PVS
Sbjct: 1   MESLKKYTSLLLFLVLFLVTARSDYYGQQRGECAPSNPEREAFKMMPCLSASKDPYSPVS 60

Query: 61  QKCCDQVRKLGQSTSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG 116
            +CCDQVRKLGQSTSC CAVMLS TA MVG+KPE+AITIPKRC+IAERPVGYNC G
Sbjct: 61  HRCCDQVRKLGQSTSCLCAVMLSNTAAMVGAKPEIAITIPKRCNIAERPVGYNCEG 116

[Close]

BLAST of MS003434 vs. ExPASy TrEMBL
Match: A0A5A7TJ62 (LTP_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G001170 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.5e-38
Identity = 75/111 (67.57%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 8   ICFLLFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQKCCDQVR 67
           +   L   +L +   CG+V+   ECAPS+P+REA+KM+PCM ASKD  YPVSQ+CCDQV+
Sbjct: 14  VMVFLVAVMLMVGTECGHVQSKGECAPSTPDREAFKMMPCMGASKDADYPVSQRCCDQVK 73

Query: 68  KLGQSTSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGGNSF 119
           KLGQSTSC CAVMLSKTA++VGSKPE+AITIPKRC+I +RPVGYNCGG  F
Sbjct: 74  KLGQSTSCLCAVMLSKTAELVGSKPEIAITIPKRCNIVDRPVGYNCGGLYF 124

[Close]

BLAST of MS003434 vs. ExPASy TrEMBL
Match: A0A1S3B414 (uncharacterized protein LOC103485536 OS=Cucumis melo OX=3656 GN=LOC103485536 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.6e-38
Identity = 74/108 (68.52%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 8   ICFLLFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQKCCDQVR 67
           +   L   +L +   CG+V+   ECAPS+P+REA+KM+PCM ASKD  YPVSQ+CCDQV+
Sbjct: 14  VMVFLVAVMLMVGTECGHVQSKGECAPSTPDREAFKMMPCMGASKDADYPVSQRCCDQVK 73

Query: 68  KLGQSTSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCGG 116
           KLGQSTSC CAVMLSKTA++VGSKPE+AITIPKRC+I +RPVGYNCGG
Sbjct: 74  KLGQSTSCLCAVMLSKTAELVGSKPEIAITIPKRCNIVDRPVGYNCGG 121

[Close]

BLAST of MS003434 vs. TAIR 10
Match: AT5G05960.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-23
Identity = 50/103 (48.54%), Postives = 69/103 (66.99%), Query Frame = 0


Query: 12  LFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQKCCDQVRKLGQ 71
           +F  +L I +    V    EC  + P+REA K+ PC  A++D    VS  CC +V+++GQ
Sbjct: 9   IFLLVLCIYSLKTMVYGAGECGRNPPDREAIKLAPCAMAAQDTSAKVSAICCARVKQMGQ 68

Query: 72  STSCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCG 115
           +  C CAVMLS TA+  G+KPE+++TIPKRC+IA RPVGY CG
Sbjct: 69  NPKCLCAVMLSSTARSSGAKPEISMTIPKRCNIANRPVGYKCG 111

[Close]

BLAST of MS003434 vs. TAIR 10
Match: AT3G53980.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 98.2 bits (243), Expect = 4.9e-21
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 31  ECAPSSPEREAYKMLPCMAASKDPYYPVSQKCCDQVRKLGQSTSCHCAVMLSKTAQMVGS 90
           EC  SSP+ EA K+ PC  A++D    V   CC Q+++  Q+  C CA++LS TA+  G 
Sbjct: 26  ECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAILLSDTAKASGV 85

Query: 91  KPEVAITIPKRCDIAERPVGYNCG 115
            PEVA+TIPKRC+ A RPVGY CG
Sbjct: 86  DPEVALTIPKRCNFANRPVGYKCG 109

[Close]

BLAST of MS003434 vs. TAIR 10
Match: AT3G53980.2 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 98.2 bits (243), Expect = 4.9e-21
Identity = 43/84 (51.19%), Postives = 56/84 (66.67%), Query Frame = 0


Query: 31  ECAPSSPEREAYKMLPCMAASKDPYYPVSQKCCDQVRKLGQSTSCHCAVMLSKTAQMVGS 90
           EC  SSP+ EA K+ PC  A++D    V   CC Q+++  Q+  C CA++LS TA+  G 
Sbjct: 26  ECGRSSPDNEAMKLAPCAGAAQDANSAVPGGCCTQIKRFSQNPKCLCAILLSDTAKASGV 85

Query: 91  KPEVAITIPKRCDIAERPVGYNCG 115
            PEVA+TIPKRC+ A RPVGY CG
Sbjct: 86  DPEVALTIPKRCNFANRPVGYKCG 109

[Close]

BLAST of MS003434 vs. TAIR 10
Match: AT2G37870.1 (Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 1.1e-12
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 0


Query: 9   CFLLFFALLFISARCGYVRPNSECAPSSPEREAYKMLPCMAASKDPYYPVSQKCCDQVRK 68
           C  +  AL+ +      V    EC      + A  + PC+ A+K+P   V   CC +V  
Sbjct: 4   CKFVAVALMSLLISLASVEAAGECGRMPINQAAASLSPCLPATKNPRGKVPPVCCAKVGA 63

Query: 69  LGQST-SCHCAVMLSKTAQMVGSKPEVAITIPKRCDIAERPVGYNCG 115
           L ++   C CAVMLS  A+  G  P +AI +PKRC+I  RP G  CG
Sbjct: 64  LIRTNPRCLCAVMLSPLAKKAGINPGIAIGVPKRCNIRNRPAGKRCG 110

The following BLAST results are available for this feature:

BLAST of MS003434 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134464.1	6.5e-60	99.13	uncharacterized protein LOC111006702 [Momordica charantia]	[more]
XP_023515889.1	2.7e-42	73.28	uncharacterized protein LOC111779894 [Cucurbita pepo subsp. pepo]	[more]
XP_022962642.1	1.2e-40	71.55	uncharacterized protein LOC111463057 [Cucurbita moschata] >KAG6602641.1 hypothet...	[more]
XP_038886380.1	2.2e-39	73.33	uncharacterized protein LOC120076581 [Benincasa hispida]	[more]
XP_022990565.1	2.4e-38	68.97	uncharacterized protein LOC111487407 [Cucurbita maxima]	[more]

BLAST of MS003434 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS003434 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYT2	3.1e-60	99.13	uncharacterized protein LOC111006702 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1HD74	5.6e-41	71.55	uncharacterized protein LOC111463057 OS=Cucurbita moschata OX=3662 GN=LOC1114630...	[more]
A0A6J1JQF7	1.2e-38	68.97	uncharacterized protein LOC111487407 OS=Cucurbita maxima OX=3661 GN=LOC111487407...	[more]
A0A5A7TJ62	1.5e-38	67.57	LTP_2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3B414	2.6e-38	68.52	uncharacterized protein LOC103485536 OS=Cucumis melo OX=3656 GN=LOC103485536 PE=...	[more]

BLAST of MS003434 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05960.1	2.3e-23	48.54	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G53980.1	4.9e-21	51.19	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT3G53980.2	4.9e-21	51.19	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]
AT2G37870.1	1.1e-12	36.45	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamil...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016140	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	PFAM	PF14368	LTP_2	coord: 29..111 e-value: 8.1E-9 score: 35.5
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	GENE3D	1.10.110.10		coord: 38..109 e-value: 1.3E-9 score: 39.8
IPR036312	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily	SUPERFAMILY	47699	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin	coord: 41..108
IPR039265	Putative lipid-transfer protein DIR1-like	PANTHER	PTHR33122	LIPID BINDING PROTEIN-RELATED	coord: 6..115
None	No IPR available	PANTHER	PTHR33122:SF66	LIPID TRANSFER PROTEIN	coord: 6..115
None	No IPR available	CDD	cd00010	AAI_LTSS	coord: 44..104 e-value: 3.2535E-4 score: 34.7099

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003434.1	MS003434.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009627	systemic acquired resistance
molecular_function	GO:0005504	fatty acid binding