MS003433 (gene) Bitter gourd (TR) v1

Overview


Name	MS003433
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold234: 2822011 .. 2822163 (-)
RNA-Seq Expression	MS003433
Synteny	MS003433

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGAAGGCGACGAGATTCTCGGCGATGGAGGGGGCGGCCAAGCAATTAGGGTTTTGGACGAGATTGTTGGTGGGATCGTTGGGGTTCCAGGCCAGGCCCAAGAAGACGGCGAGAGTGAACATGGAGTTGACGTTCACGATGCCGTCAAGGGC

mRNA sequence

GTGGAAGGCGACGAGATTCTCGGCGATGGAGGGGGCGGCCAAGCAATTAGGGTTTTGGACGAGATTGTTGGTGGGATCGTTGGGGTTCCAGGCCAGGCCCAAGAAGACGGCGAGAGTGAACATGGAGTTGACGTTCACGATGCCGTCAAGGGC

Coding sequence (CDS)

GTGGAAGGCGACGAGATTCTCGGCGATGGAGGGGGCGGCCAAGCAATTAGGGTTTTGGACGAGATTGTTGGTGGGATCGTTGGGGTTCCAGGCCAGGCCCAAGAAGACGGCGAGAGTGAACATGGAGTTGACGTTCACGATGCCGTCAAGGGC

Protein sequence

VEGDEILGDGGGGQAIRVLDEIVGGIVGVPGQAQEDGESEHGVDVHDAVKG

Homology

[Close]

BLAST of MS003433 vs. NCBI nr
Match: QHO02878.1 (uncharacterized protein DS421_13g427550 [Arachis hypogaea])

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 1   VEGDEILGDGGGGQAIRVLDEIVGGIVGVPGQAQEDGESEHGVDVHDAVK 51
           VEGDEILGDGGGG+A  +  E+V G+VGVP +A EDGE E GV VHD+V+
Sbjct: 90  VEGDEILGDGGGGRAGWIGVEVVRGVVGVPREADEDGEGEEGVHVHDSVQ 139

[Close]

BLAST of MS003433 vs. NCBI nr
Match: QHO59029.1 (uncharacterized protein DS421_3g95610 [Arachis hypogaea])

HSP 1 Score: 63.5 bits (153), Expect = 5.9e-07
Identity = 32/50 (64.00%), Postives = 39/50 (78.00%), Query Frame = 0


Query: 1   VEGDEILGDGGGGQAIRVLDEIVGGIVGVPGQAQEDGESEHGVDVHDAVK 51
           VEGD+ILGDGGGG+A  +  E+V G+VGVP +A EDGE E GV VHD V+
Sbjct: 141 VEGDDILGDGGGGRAGWIGVEVVRGVVGVPREADEDGEGEEGVHVHDGVQ 190

The following BLAST results are available for this feature:

BLAST of MS003433 vs. NCBI nr


Match Name	E-value	Identity	Description
QHO02878.1	2.0e-07	66.00	uncharacterized protein DS421_13g427550 [Arachis hypogaea]	[more]
QHO59029.1	5.9e-07	64.00	uncharacterized protein DS421_3g95610 [Arachis hypogaea]	[more]

BLAST of MS003433 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS003433 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS003433 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003433.1	MS003433.1	mRNA