MS003422 (gene) Bitter gourd (TR) v1

Overview


Name	MS003422
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	RING-CH-type domain-containing protein
Location	scaffold234: 2772086 .. 2774203 (+)
RNA-Seq Expression	MS003422
Synteny	MS003422

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACAATAGACAACTCCCACGTCATCGCTGTGGAAGAAGAGGAAGAGGGGACTCGCCGGGCTTCCACCGCCGGCGCTGACGTCTCACCGCGGCGGCGCGGGGCTGAGATTGAGGCCGAGAAAAGAAGGGGATCCTCTGTTTCGGAGTGCTCTGTGGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCCAAAATCGAGAGGGATTGCCGGATTTGCCATCTGAGTTTGGATTCTTCCAATCACGAATCTGGAATCCCTATCGAGCTGGGTTGTTCCTGTAAGGACGATTTGGCTGCTGCCCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATGTAAGTTCCCAAATTAGAACTCCTGATTTTTTGCCTAAATTTGTTCGTTTCAAGTGTTTAGGATTATATTTCAGCATTGGATATAATGAGCTGTACGATACACATGGCTCGAATCTGGACTAAGATCCTTGATTATCATGATTAGAACTTACAGTTCAAATTTCCCAATTCCCATTTGTGCTTTAGTTTTTATTTTTGTATTATTTTCTCTTGTTTCTGACTACTCTAGAAGGTTCTTCTCTTACTTAAAAGTTGTGGACCTGTGGTTGACTGGTATTGTTCTAAGAATCTTAGTCATGTTAAGGAATTTGGGTTGTGGCTGTCTTTTGTTTCGTGTCAAAATAGACATGCATTGACTAAATTTGACTAATTCCTGGTCTATTCTGTCTGCAAAAACATTTTAGTCCCTAATGCAATTGATTAGATATCTGATTATGCAGTAATCTGGATTTCCATAAATAGTTAGGCACATTGTCAATTCTTCAGCTTTTTAGGATCCATGATTTTATTTCCTGTTAAGGAACAAGGCCAAAATGAAATGTGCTTCTTTGTCAAAACAAGGAGATGTTGGTGGACGATATGGGACTGAGATGTGATTTAGTTGAGGAGACTGCAGCTCCCAGCCTGGGTGTGTTTCTTGCAGAAGAACTCTCTGTTCGATTCTCAAGAAACGCTCGGTTTTTCTTAGAAGTGTTGTTGCTTTCTTTAATCTTATGTACATTATTGATGGGAGCCCATTTTTTTAGCTAACGTTTGAATATTCCTTGTTCAACATGTTCTGTCCTTTTTGTTTATGGTCAGTTGCTTCTGTTTTGAGTTTCAAATAGCTTTCTTTGAGGTTTTATTGATATAGTGACATTGACAACTCCATAAATTCTATGATCGGCATATCTATTTATATTGATGCTATCTTTACTTCAAAATGCATTCAACTTATATGGGACAAAGTTAGAGCTTCATCCAAGATCATGAAGCTAGTTTCACTCCTGAAAAATTCACACTAACTAACATGTATCTCCTTTGAAACTCGGAATCGTGTTTAAGTTTATAGATACTATATTTGGTCAAGATTATTTTCTCATTCCTTCTACTGCATCCTTGATCAGTATTGACCGTCTAAAACCGCTGATGAAGCTTATTATTTTGGACACAGATCATGTTCAAAAGGGCTCCAATCCGAAGACCTATCTTCATCATGTCTTTTTTCTAATCAAACCAATAAGAATGTACAAGCATATCAAAACAATTGATTTGTTAATATAGTTAGATCTGTTCATCATAACTTTATAACTCTTGGCCCTGTTAGCAACCATGTGGAGTTTTCCATTAGGCAAAATTTTAATTACTGGAGAGTGATCTGTATCTAGAAACTTGCTAGTTATTCATGGTGTTCTTCTAGCTATGACTGTAGAGTTTGGGTTGATTTGAGATTTGTATTTTCTGGAAGAAGATGAAGAAAAGTAGATTCTTGTATGCCTCTGCTTCCACTGATCCATATCCAATTTGTTACAGCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTAGTACTCAAGAAGCCGATTCAACAGAGCAGCGGAATGACTCAACTGATGCAACGACAGCGACTGCTGCAGCTGCTGTTGTGGTACCACCGCACTCTACAGAATCTCGGAACTTCTGGCAGGGCCACAGGTTCCTGAACTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCA

mRNA sequence

ATGACGACAATAGACAACTCCCACGTCATCGCTGTGGAAGAAGAGGAAGAGGGGACTCGCCGGGCTTCCACCGCCGGCGCTGACGTCTCACCGCGGCGGCGCGGGGCTGAGATTGAGGCCGAGAAAAGAAGGGGATCCTCTGTTTCGGAGTGCTCTGTGGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCCAAAATCGAGAGGGATTGCCGGATTTGCCATCTGAGTTTGGATTCTTCCAATCACGAATCTGGAATCCCTATCGAGCTGGGTTGTTCCTGTAAGGACGATTTGGCTGCTGCCCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTAGTACTCAAGAAGCCGATTCAACAGAGCAGCGGAATGACTCAACTGATGCAACGACAGCGACTGCTGCAGCTGCTGTTGTGGTACCACCGCACTCTACAGAATCTCGGAACTTCTGGCAGGGCCACAGGTTCCTGAACTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCA

Coding sequence (CDS)

ATGACGACAATAGACAACTCCCACGTCATCGCTGTGGAAGAAGAGGAAGAGGGGACTCGCCGGGCTTCCACCGCCGGCGCTGACGTCTCACCGCGGCGGCGCGGGGCTGAGATTGAGGCCGAGAAAAGAAGGGGATCCTCTGTTTCGGAGTGCTCTGTGGAGATGGATCTGGAATGTGGGTTGGCTGAGATTAAGGTACATTTGGCCAAAATCGAGAGGGATTGCCGGATTTGCCATCTGAGTTTGGATTCTTCCAATCACGAATCTGGAATCCCTATCGAGCTGGGTTGTTCCTGTAAGGACGATTTGGCTGCTGCCCATAAGCACTGTGCTGAGGCTTGGTTCAAGATTAAGGGCGACATCACCTGTGAAATCTGTGGATCAATTGCACACAATGTTACTAGTACTCAAGAAGCCGATTCAACAGAGCAGCGGAATGACTCAACTGATGCAACGACAGCGACTGCTGCAGCTGCTGTTGTGGTACCACCGCACTCTACAGAATCTCGGAACTTCTGGCAGGGCCACAGGTTCCTGAACTTCTTACTCGCCTGCATGGTTTTCGCCTTCGTCATATCATGGCTATTTCACTTCAAAATACCCTCA

Protein sequence

MTTIDNSHVIAVEEEEEGTRRASTAGADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS

Homology

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BLAST of MS003422 vs. NCBI nr
Match: XP_022133648.1 (uncharacterized protein LOC111006186 [Momordica charantia])

HSP 1 Score: 400.2 bits (1027), Expect = 1.1e-107
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MTTIDNSHVIAVEEEEEGTRRASTAGADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECG 60
           MTTIDNSHVIAVEEEEEG RRAST GADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECG
Sbjct: 1   MTTIDNSHVIAVEEEEEGPRRASTTGADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECG 60

Query: 61  LAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGD 120
           LAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGD
Sbjct: 61  LAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGD 120

Query: 121 ITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLN 180
           ITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLN
Sbjct: 121 ITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLN 180

Query: 181 FLLACMVFAFVISWLFHFKIPS 203
           FLLACMVFAFVISWLFHFKIPS
Sbjct: 181 FLLACMVFAFVISWLFHFKIPS 202

[Close]

BLAST of MS003422 vs. NCBI nr
Match: XP_022990745.1 (uncharacterized protein LOC111487535 [Cucurbita maxima])

HSP 1 Score: 335.9 bits (860), Expect = 2.4e-88
Identity = 173/215 (80.47%), Postives = 184/215 (85.58%), Query Frame = 0


Query: 1   MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI---EAEKRRGSS 60
           M+TI N+HV+A+EEE EE   R STAG D SP          +  AEI     EKRRGSS
Sbjct: 1   MSTIQNTHVVAMEEEQEERPSRVSTAGTDASPASDDVRRCSVQSSAEIVGAAVEKRRGSS 60

Query: 61  VSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGL EIKVHLAK+ERDCRICHLSLD++NHESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHST 180
           KHCAEAWFK+KGDITCEICGSIAHNVTST EADSTEQ N+S D TTAT AAAVVVPPHST
Sbjct: 121 KHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAAAVVVPPHST 180

Query: 181 ESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 203
           E+RNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 ETRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215

[Close]

BLAST of MS003422 vs. NCBI nr
Match: XP_022957596.1 (uncharacterized protein LOC111458938 [Cucurbita moschata])

HSP 1 Score: 331.3 bits (848), Expect = 6.0e-87
Identity = 171/216 (79.17%), Postives = 184/216 (85.19%), Query Frame = 0


Query: 1   MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI----EAEKRRGS 60
           M+TI+++HV+A+EEE EE   R STAG   SP          +  AEI      EKRRGS
Sbjct: 1   MSTIEDTHVVAMEEEKEERPSRVSTAGTAASPASDDVRRCSVQSSAEIVGAAAVEKRRGS 60

Query: 61  SVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAA 120
           SVSECSVEMDLECGL EIKVHLAK+ERDCRICHLSLD++NHESGIPIELGCSCKDDLAAA
Sbjct: 61  SVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAA 120

Query: 121 HKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHS 180
           HKHCAEAWFK+KGDITCEICGSIAHNVTST EADSTEQ N+S D TTAT AAAVVVPPHS
Sbjct: 121 HKHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAAAVVVPPHS 180

Query: 181 TESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 203
           TE+RNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 TEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216

[Close]

BLAST of MS003422 vs. NCBI nr
Match: KAG6602635.1 (hypothetical protein SDJN03_07868, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 329.7 bits (844), Expect = 1.7e-86
Identity = 170/217 (78.34%), Postives = 182/217 (83.87%), Query Frame = 0


Query: 1   MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR----RR----------GAEIEAEKRRG 60
           M+TI+++HV+A+EEE EE   R STAG   SP     RR          GA    EKRRG
Sbjct: 1   MSTIEDTHVVAMEEEKEERPSRVSTAGTAASPASDDVRRCSVQSSAEIVGAAAAVEKRRG 60

Query: 61  SSVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAA 120
           SSVSECSVEMDLECGL EIKVHLAK+ERDCRICHLSLD++NHESGIPIELGCSCKDDLAA
Sbjct: 61  SSVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAA 120

Query: 121 AHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPH 180
           AHKHCAEAWFK+KGDITCEICGSIAHNVT T EADSTEQ N+S D TTAT  AAVVVPPH
Sbjct: 121 AHKHCAEAWFKVKGDITCEICGSIAHNVTGTCEADSTEQCNESNDGTTATTVAAVVVPPH 180

Query: 181 STESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 203
           STE+RNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 STEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 217

[Close]

BLAST of MS003422 vs. NCBI nr
Match: XP_022938531.1 (uncharacterized protein LOC111444740 [Cucurbita moschata] >XP_022938532.1 uncharacterized protein LOC111444740 [Cucurbita moschata])

HSP 1 Score: 328.2 bits (840), Expect = 5.1e-86
Identity = 171/215 (79.53%), Postives = 178/215 (82.79%), Query Frame = 0


Query: 1   MTTIDNSHVIAVE-EEEEGTRRASTAGADV------------SPRRRGAEIEAEKRRGSS 60
           MTT  NSHV+A+E  E E  RR S AGAD               R       AEKRR SS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGLAEIK+HL K+ERDCRICHLSLD+SN ESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKLHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHST 180
           KHCAEAWFKIKGDITCEICGSIAHNVT+T E DSTEQRNDS DATTATAAAAVVVPPHST
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAVVVPPHST 180

Query: 181 ESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 203
           E+RNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215

[Close]

BLAST of MS003422 vs. ExPASy TrEMBL
Match: A0A6J1BZQ7 (uncharacterized protein LOC111006186 OS=Momordica charantia OX=3673 GN=LOC111006186 PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.1e-108
Identity = 200/202 (99.01%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MTTIDNSHVIAVEEEEEGTRRASTAGADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECG 60
           MTTIDNSHVIAVEEEEEG RRAST GADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECG
Sbjct: 1   MTTIDNSHVIAVEEEEEGPRRASTTGADVSPRRRGAEIEAEKRRGSSVSECSVEMDLECG 60

Query: 61  LAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGD 120
           LAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGD
Sbjct: 61  LAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGD 120

Query: 121 ITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLN 180
           ITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLN
Sbjct: 121 ITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLN 180

Query: 181 FLLACMVFAFVISWLFHFKIPS 203
           FLLACMVFAFVISWLFHFKIPS
Sbjct: 181 FLLACMVFAFVISWLFHFKIPS 202

[Close]

BLAST of MS003422 vs. ExPASy TrEMBL
Match: A0A6J1JQX9 (uncharacterized protein LOC111487535 OS=Cucurbita maxima OX=3661 GN=LOC111487535 PE=4 SV=1)

HSP 1 Score: 335.9 bits (860), Expect = 1.2e-88
Identity = 173/215 (80.47%), Postives = 184/215 (85.58%), Query Frame = 0


Query: 1   MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI---EAEKRRGSS 60
           M+TI N+HV+A+EEE EE   R STAG D SP          +  AEI     EKRRGSS
Sbjct: 1   MSTIQNTHVVAMEEEQEERPSRVSTAGTDASPASDDVRRCSVQSSAEIVGAAVEKRRGSS 60

Query: 61  VSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGL EIKVHLAK+ERDCRICHLSLD++NHESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHST 180
           KHCAEAWFK+KGDITCEICGSIAHNVTST EADSTEQ N+S D TTAT AAAVVVPPHST
Sbjct: 121 KHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAAAVVVPPHST 180

Query: 181 ESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 203
           E+RNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 ETRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215

[Close]

BLAST of MS003422 vs. ExPASy TrEMBL
Match: A0A6J1GZN3 (uncharacterized protein LOC111458938 OS=Cucurbita moschata OX=3662 GN=LOC111458938 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.9e-87
Identity = 171/216 (79.17%), Postives = 184/216 (85.19%), Query Frame = 0


Query: 1   MTTIDNSHVIAVEEE-EEGTRRASTAGADVSPR---------RRGAEI----EAEKRRGS 60
           M+TI+++HV+A+EEE EE   R STAG   SP          +  AEI      EKRRGS
Sbjct: 1   MSTIEDTHVVAMEEEKEERPSRVSTAGTAASPASDDVRRCSVQSSAEIVGAAAVEKRRGS 60

Query: 61  SVSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAA 120
           SVSECSVEMDLECGL EIKVHLAK+ERDCRICHLSLD++NHESGIPIELGCSCKDDLAAA
Sbjct: 61  SVSECSVEMDLECGLGEIKVHLAKMERDCRICHLSLDATNHESGIPIELGCSCKDDLAAA 120

Query: 121 HKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHS 180
           HKHCAEAWFK+KGDITCEICGSIAHNVTST EADSTEQ N+S D TTAT AAAVVVPPHS
Sbjct: 121 HKHCAEAWFKVKGDITCEICGSIAHNVTSTCEADSTEQCNESNDGTTATTAAAVVVPPHS 180

Query: 181 TESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 203
           TE+RNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 TEARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 216

[Close]

BLAST of MS003422 vs. ExPASy TrEMBL
Match: A0A6J1FEB0 (uncharacterized protein LOC111444740 OS=Cucurbita moschata OX=3662 GN=LOC111444740 PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.5e-86
Identity = 171/215 (79.53%), Postives = 178/215 (82.79%), Query Frame = 0


Query: 1   MTTIDNSHVIAVE-EEEEGTRRASTAGADV------------SPRRRGAEIEAEKRRGSS 60
           MTT  NSHV+A+E  E E  RR S AGAD               R       AEKRR SS
Sbjct: 1   MTTTQNSHVVAMEVGEVEQPRRTSAAGADALLASNDVRQCSGQSRAEIVGAAAEKRRESS 60

Query: 61  VSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGLAEIK+HL K+ERDCRICHLSLD+SN ESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKLHLTKMERDCRICHLSLDASNQESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHST 180
           KHCAEAWFKIKGDITCEICGSIAHNVT+T E DSTEQRNDS DATTATAAAAVVVPPHST
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTATYEPDSTEQRNDSNDATTATAAAAVVVPPHST 180

Query: 181 ESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 203
           E+RNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215

[Close]

BLAST of MS003422 vs. ExPASy TrEMBL
Match: A0A1S3B429 (uncharacterized protein LOC103485546 OS=Cucumis melo OX=3656 GN=LOC103485546 PE=4 SV=1)

HSP 1 Score: 322.8 bits (826), Expect = 1.0e-84
Identity = 167/215 (77.67%), Postives = 180/215 (83.72%), Query Frame = 0


Query: 1   MTTIDNSHVIAVEEEE---------EGTRRAST-AGADVSPRRRGA---EIEAEKRRGSS 60
           MTT+  SHV+A+E E+         +  RR S  + AD+      A      AEKRRGSS
Sbjct: 1   MTTVQASHVVAMEVEQHQQHPRTDSDEVRRCSVHSRADILEEEGVAVAVAAAAEKRRGSS 60

Query: 61  VSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAH 120
           VSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLD+SNHESGIPIELGCSCKDDLAAAH
Sbjct: 61  VSECSVEMDLECGLAEIKVHLAKIERDCRICHLSLDASNHESGIPIELGCSCKDDLAAAH 120

Query: 121 KHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHST 180
           KHCAEAWFKIKGDITCEICGSIAHNVT T EADSTEQRN+  +ATTATA AA+V+PPHST
Sbjct: 121 KHCAEAWFKIKGDITCEICGSIAHNVTGTYEADSTEQRNEPNEATTATATAAIVMPPHST 180

Query: 181 ESRNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 203
           E+RNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS
Sbjct: 181 EARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPS 215

[Close]

BLAST of MS003422 vs. TAIR 10
Match: AT5G05830.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 217.6 bits (553), Expect = 9.0e-57
Identity = 111/187 (59.36%), Postives = 131/187 (70.05%), Query Frame = 0


Query: 22  ASTAGADVSPRRRGAEIEAE------KRRGSSVSECSVEMDLECGLAEIKVHLAKIERDC 81
           +S    D  PRR    +E E      + R S+ S CSVE+DLE GL E  VHL++ ERDC
Sbjct: 20  SSGCDGDGEPRRSSGAVEKEEEIVKDEERRSNASVCSVEIDLELGLPEKVVHLSQSERDC 79

Query: 82  RICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTS 141
           RICH+SLD++N ESG+PIELGCSCK DLAAAHKHCAE WFKIKG+  CE+CGSIA NV  
Sbjct: 80  RICHMSLDAANLESGVPIELGCSCKADLAAAHKHCAETWFKIKGNKICEVCGSIAGNVVG 139

Query: 142 TQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFVISWL 201
           + E +S E RN++      T   +    P   E R+FWQGHRFLNFLLACMVFAFVISWL
Sbjct: 140 SVEVESEESRNEANGVENLTLRTS---GPRLVEGRSFWQGHRFLNFLLACMVFAFVISWL 199

Query: 202 FHFKIPS 203
           FHF +PS
Sbjct: 200 FHFNVPS 203

[Close]

BLAST of MS003422 vs. TAIR 10
Match: AT5G01070.2 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 139.0 bits (349), Expect = 4.1e-33
Identity = 70/131 (53.44%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 72  ERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAH 131
           E+DCRICHL L+SS HE G P+ LGCSCKDDL   HK CA+ WFKIKG+ TCEIC SIA 
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGNKTCEICRSIAQ 134

Query: 132 NVTSTQEADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACMVFAFV 191
           N               + D   A     +V    S + R   +G+RFLNFLL CMV AFV
Sbjct: 135 NFFKVDNEIGQTTVETNVDDVEAGNTPTMVATSDS-DDRRLCRGNRFLNFLLTCMVCAFV 194

Query: 192 ISWLFHFKIPS 203
           ISW FHF +PS
Sbjct: 195 ISWFFHFNLPS 204

[Close]

BLAST of MS003422 vs. TAIR 10
Match: AT2G37950.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-30
Identity = 70/136 (51.47%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 72  ERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGDITCEICGSIAH 131
           E+DCRICHL +++S    G  IELGCSCKDDLA AH+ CAE WFKIKGD TCEIC S+A 
Sbjct: 81  EKDCRICHLGVETS---GGGAIELGCSCKDDLAVAHRQCAETWFKIKGDKTCEICQSVAR 140

Query: 132 NVTSTQE-----ADSTEQRNDSTDATTATAAAAVVVPPHSTESRNFWQGHRFLNFLLACM 191
           NV    E      +  E RN    A      A VV         N WQ  R +N +LACM
Sbjct: 141 NVGGANEMVGSTMEERELRNGEETAAGEGGGATVV--------ENRWQPQRVVNLVLACM 200

Query: 192 VFAFVISWLFHFKIPS 203
           VF F ISW+FHF + S
Sbjct: 201 VFGFFISWIFHFHVSS 205

[Close]

BLAST of MS003422 vs. TAIR 10
Match: AT5G59000.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 125.6 bits (314), Expect = 4.7e-29
Identity = 73/159 (45.91%), Postives = 87/159 (54.72%), Query Frame = 0


Query: 73  RDCRICHLSL---------------DSSNHES----------------GIPIELGCSCKD 132
           RDCRICHL L               DS + E                 G+P++LGCSCK 
Sbjct: 79  RDCRICHLPLETNKEAEDEDEEEEDDSDDDEDEEDEEEEEEEEEEEYYGLPLQLGCSCKG 138

Query: 133 DLAAAHKHCAEAWFKIKGDITCEICGSIAHNVTSTQEADSTEQRNDSTDATTATAAAAVV 192
           DL  AH  CAE WFKIKG++TCEICG++A NV         EQ N  + A+T + AAA  
Sbjct: 139 DLGVAHSKCAETWFKIKGNMTCEICGAMALNVAG-------EQSNPESTASTHSQAAA-G 198

Query: 193 VPPHSTESRNFWQGHRFLNFLLACMVFAFVISWLFHFKI 201
                TE R  W G   +NFLLA MVFAFV+SWLFHFK+
Sbjct: 199 QSLTQTEPRGIWHGRPVMNFLLAAMVFAFVVSWLFHFKV 229

[Close]

BLAST of MS003422 vs. TAIR 10
Match: AT5G01070.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-16
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = 0


Query: 72  ERDCRICHLSLDSSNHESGIPIELGCSCKDDLAAAHKHCAEAWFKIKGD 121
           E+DCRICHL L+SS HE G P+ LGCSCKDDL   HK CA+ WFKIKG+
Sbjct: 75  EKDCRICHLGLESSRHECGDPMVLGCSCKDDLGYVHKQCADTWFKIKGN 123

The following BLAST results are available for this feature:

BLAST of MS003422 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133648.1	1.1e-107	99.01	uncharacterized protein LOC111006186 [Momordica charantia]	[more]
XP_022990745.1	2.4e-88	80.47	uncharacterized protein LOC111487535 [Cucurbita maxima]	[more]
XP_022957596.1	6.0e-87	79.17	uncharacterized protein LOC111458938 [Cucurbita moschata]	[more]
KAG6602635.1	1.7e-86	78.34	hypothetical protein SDJN03_07868, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022938531.1	5.1e-86	79.53	uncharacterized protein LOC111444740 [Cucurbita moschata] >XP_022938532.1 unchar...	[more]

BLAST of MS003422 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS003422 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZQ7	5.1e-108	99.01	uncharacterized protein LOC111006186 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A6J1JQX9	1.2e-88	80.47	uncharacterized protein LOC111487535 OS=Cucurbita maxima OX=3661 GN=LOC111487535...	[more]
A0A6J1GZN3	2.9e-87	79.17	uncharacterized protein LOC111458938 OS=Cucurbita moschata OX=3662 GN=LOC1114589...	[more]
A0A6J1FEB0	2.5e-86	79.53	uncharacterized protein LOC111444740 OS=Cucurbita moschata OX=3662 GN=LOC1114447...	[more]
A0A1S3B429	1.0e-84	77.67	uncharacterized protein LOC103485546 OS=Cucumis melo OX=3656 GN=LOC103485546 PE=...	[more]

BLAST of MS003422 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05830.1	9.0e-57	59.36	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.2	4.1e-33	53.44	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT2G37950.1	3.2e-30	51.47	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G59000.1	4.7e-29	45.91	RING/FYVE/PHD zinc finger superfamily protein	[more]
AT5G01070.1	2.0e-16	69.39	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 74..127 e-value: 7.4E-17 score: 72.0
IPR011016	Zinc finger, RING-CH-type	PFAM	PF12906	RINGv	coord: 75..126 e-value: 5.1E-9 score: 36.1
IPR011016	Zinc finger, RING-CH-type	PROSITE	PS51292	ZF_RING_CH	coord: 67..133 score: 16.952343
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 63..139 e-value: 1.2E-13 score: 52.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..41
None	No IPR available	PANTHER	PTHR46214	ZINC FINGER, RING-CH-TYPE	coord: 16..202
None	No IPR available	PANTHER	PTHR46214:SF5	OS01G0850200 PROTEIN	coord: 16..202
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 72..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003422.1	MS003422.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding