MS003375 (gene) Bitter gourd (TR) v1

Overview


Name	MS003375
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	HMA domain-containing protein
Location	scaffold234: 2431753 .. 2432093 (+)
RNA-Seq Expression	MS003375
Synteny	MS003375

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGTGGAGTTGAAGGTGGGTTTGCACTGTGAGGACTGCATCAAGAAGATCCTCAAAGCCATCAAGAAAATCCAAGGTTTGTATTCAATGTCTTCATCAATTTCTCCTCTGCCTCTGGTTTAAATTTAATGAACAAAGCATTGAATCTTCTGTGTTCATTTTTTTTTTTTTGGGGGGGGGGACGATTTGCAGATATAGAGACATATAATGTAGATACGCAGCTGAACAAGGTGACTGTTACAGGCAATGTCACCACAGAAGAAGTCATCAAAGTGCTTCACAAAATTAGCAAAACTGCAATCCCTTGGCAAGCTGATGAAGTCAATAATCAAGTCAACAAC

mRNA sequence

GTGGTGGAGTTGAAGGTGGGTTTGCACTGTGAGGACTGCATCAAGAAGATCCTCAAAGCCATCAAGAAAATCCAAGGTTGTATTCAATGTCTTCATCAATTTCTCCTCTGCCTCTGGTTTAAATTTAATGAACAAAGCATTGAATCTTCTGTGTTCATTTTTTTTTGGGGGGGGGGACGATTTGCAGATATAGAGACATATAATGTAGATACGCAGCTGAACAAGGTGACTGTTACAGGCAATGTCACCACAGAAGAAGTCATCAAAGTGCTTCACAAAATTAGCAAAACTGCAATCCCTTGGCAAGCTGATGAAGTCAATAATCAAGTCAACAAC

Coding sequence (CDS)

GTGGTGGAGTTGAAGGTGGGTTTGCACTGTGAGGACTGCATCAAGAAGATCCTCAAAGCCATCAAGAAAATCCAAGGTTGTATTCAATGTCTTCATCAATTTCTCCTCTGCCTCTGGTTTAAATTTAATGAACAAAGCATTGAATCTTCTGTGTTCATTTTTTTTTGGGGGGGGGGACGATTTGCAGATATAGAGACATATAATGTAGATACGCAGCTGAACAAGGTGACTGTTACAGGCAATGTCACCACAGAAGAAGTCATCAAAGTGCTTCACAAAATTAGCAAAACTGCAATCCCTTGGCAAGCTGATGAAGTCAATAATCAAGTCAACAAC

Protein sequence

VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGRFADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVNN

Homology

[Close]

BLAST of MS003375 vs. NCBI nr
Match: XP_022133451.1 (copper transport protein ATX1 [Momordica charantia])

HSP 1 Score: 131.0 bits (328), Expect = 6.6e-27
Identity = 75/112 (66.96%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           VVELKVGLHCEDCIKKILKAIKKIQ                                   
Sbjct: 44  VVELKVGLHCEDCIKKILKAIKKIQ----------------------------------- 103

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVNN 113
             DIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVNN
Sbjct: 104 --DIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVNN 118

[Close]

BLAST of MS003375 vs. NCBI nr
Match: XP_015877508.1 (heavy metal-associated isoprenylated plant protein 45 [Ziziphus jujuba])

HSP 1 Score: 103.2 bits (256), Expect = 1.5e-18
Identity = 59/105 (56.19%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           VVELKVGLHC++CIKKILKAIKKIQ                                   
Sbjct: 4   VVELKVGLHCDECIKKILKAIKKIQ----------------------------------- 63

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADE 106
             DIETYNVDTQLNKVTVTGNVTTEEVIKV+HKI KTA  W+A++
Sbjct: 64  --DIETYNVDTQLNKVTVTGNVTTEEVIKVIHKIGKTASTWEAEQ 71

[Close]

BLAST of MS003375 vs. NCBI nr
Match: XP_004138408.1 (protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-18
Identity = 60/108 (55.56%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           VVELKV LHCE+CIKKILKAIKKIQ                                   
Sbjct: 4   VVELKVFLHCEECIKKILKAIKKIQ----------------------------------- 63

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNN 109
             DIETYNVD ++NKV VTGNVT EEVIKVL KI KTAIPWQ DE+NN
Sbjct: 64  --DIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNN 74

[Close]

BLAST of MS003375 vs. NCBI nr
Match: KAE8646572.1 (hypothetical protein Csa_004951, partial [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 5.6e-18
Identity = 60/108 (55.56%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           VVELKV LHCE+CIKKILKAIKKIQ                                   
Sbjct: 1   VVELKVFLHCEECIKKILKAIKKIQ----------------------------------- 60

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNN 109
             DIETYNVD ++NKV VTGNVT EEVIKVL KI KTAIPWQ DE+NN
Sbjct: 61  --DIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNN 71

[Close]

BLAST of MS003375 vs. NCBI nr
Match: KAA0052042.1 (superoxide dismutase 1 copper chaperone [Cucumis melo var. makuwa] >TYK04519.1 superoxide dismutase 1 copper chaperone [Cucumis melo var. makuwa])

HSP 1 Score: 100.5 bits (249), Expect = 9.6e-18
Identity = 59/111 (53.15%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           VVELKV LHC++CIKKILKAIKKIQ                                   
Sbjct: 3   VVELKVFLHCDECIKKILKAIKKIQ----------------------------------- 62

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVN 112
             DIETYNVD ++NKV VTGNVT EEVIKVL KI KTA+PWQ DE+NN  N
Sbjct: 63  --DIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAVPWQDDELNNITN 76

[Close]

BLAST of MS003375 vs. ExPASy TrEMBL
Match: A0A6J1BV52 (copper transport protein ATX1 OS=Momordica charantia OX=3673 GN=LOC111006024 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 3.2e-27
Identity = 75/112 (66.96%), Postives = 75/112 (66.96%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           VVELKVGLHCEDCIKKILKAIKKIQ                                   
Sbjct: 44  VVELKVGLHCEDCIKKILKAIKKIQ----------------------------------- 103

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVNN 113
             DIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVNN
Sbjct: 104 --DIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVNN 118

[Close]

BLAST of MS003375 vs. ExPASy TrEMBL
Match: A0A6P3ZEH3 (heavy metal-associated isoprenylated plant protein 45 OS=Ziziphus jujuba OX=326968 GN=LOC107413950 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 7.1e-19
Identity = 59/105 (56.19%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           VVELKVGLHC++CIKKILKAIKKIQ                                   
Sbjct: 4   VVELKVGLHCDECIKKILKAIKKIQ----------------------------------- 63

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADE 106
             DIETYNVDTQLNKVTVTGNVTTEEVIKV+HKI KTA  W+A++
Sbjct: 64  --DIETYNVDTQLNKVTVTGNVTTEEVIKVIHKIGKTASTWEAEQ 71

[Close]

BLAST of MS003375 vs. ExPASy TrEMBL
Match: A0A0A0K8N1 (HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013360 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.7e-18
Identity = 60/108 (55.56%), Postives = 64/108 (59.26%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           VVELKV LHCE+CIKKILKAIKKIQ                                   
Sbjct: 4   VVELKVFLHCEECIKKILKAIKKIQ----------------------------------- 63

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNN 109
             DIETYNVD ++NKV VTGNVT EEVIKVL KI KTAIPWQ DE+NN
Sbjct: 64  --DIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAIPWQDDELNN 74

[Close]

BLAST of MS003375 vs. ExPASy TrEMBL
Match: A0A2P2IHW8 (HMA domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.7e-18
Identity = 59/107 (55.14%), Postives = 65/107 (60.75%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           VVELKVGLHCE+CIKKILKAIKKIQ                                   
Sbjct: 4   VVELKVGLHCEECIKKILKAIKKIQ----------------------------------- 63

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVN 108
             DIETY+VDTQL+KVTVTGNVTTEEVI+V+ KI KTA  W ADE+N
Sbjct: 64  --DIETYDVDTQLSKVTVTGNVTTEEVIRVIQKIGKTATTWGADEIN 73

[Close]

BLAST of MS003375 vs. ExPASy TrEMBL
Match: A0A5D3C2A2 (Superoxide dismutase 1 copper chaperone OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001360 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.6e-18
Identity = 59/111 (53.15%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           VVELKV LHC++CIKKILKAIKKIQ                                   
Sbjct: 3   VVELKVFLHCDECIKKILKAIKKIQ----------------------------------- 62

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVN 112
             DIETYNVD ++NKV VTGNVT EEVIKVL KI KTA+PWQ DE+NN  N
Sbjct: 63  --DIETYNVDMEMNKVIVTGNVTNEEVIKVLQKIRKTAVPWQDDELNNITN 76

[Close]

BLAST of MS003375 vs. TAIR 10
Match: AT5G05365.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 85.5 bits (210), Expect = 3.0e-17
Identity = 49/104 (47.12%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           VVELKV LHC++CI+KILKAIKKI+                                   
Sbjct: 4   VVELKVNLHCDECIRKILKAIKKIE----------------------------------- 63

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQAD 105
             DIE Y+VDTQLNKVTVTGNVT E+VI+VL K+ K A+ W  D
Sbjct: 64  --DIEAYDVDTQLNKVTVTGNVTEEQVIRVLQKVRKAAVKWDQD 70

[Close]

BLAST of MS003375 vs. TAIR 10
Match: AT3G56891.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.9e-04
Identity = 28/101 (27.72%), Postives = 42/101 (41.58%), Query Frame = 0


Query: 1   VVELKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGR 60
           +VEL V + C+ C KK+ +AI K+ G                                  
Sbjct: 17  IVELLVDMDCKGCEKKVRRAISKLDG---------------------------------- 76

Query: 61  FADIETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPW 102
              ++T  +D    KVTVTG V  EEV+K++ +  +TA  W
Sbjct: 77  ---VDTVEIDVDRQKVTVTGYVDREEVLKMVKRTGRTAEYW 80

[Close]

BLAST of MS003375 vs. TAIR 10
Match: AT5G27690.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.8e-04
Identity = 32/109 (29.36%), Postives = 43/109 (39.45%), Query Frame = 0


Query: 4   LKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGRFAD 63
           L+V +HCE C +KI K + KI G                                     
Sbjct: 34  LRVSIHCEGCKRKIKKILSKIDG------------------------------------- 93

Query: 64  IETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVNN 113
           + T N+D +  KVTV GNV  E +IK + K  + A  W     NN +NN
Sbjct: 94  VYTTNIDVKQQKVTVIGNVEPEILIKKIMKAGRHAELWPTSMENN-INN 104

[Close]

BLAST of MS003375 vs. TAIR 10
Match: AT3G06130.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 6.4e-04
Identity = 30/108 (27.78%), Postives = 45/108 (41.67%), Query Frame = 0


Query: 4   LKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGRFAD 63
           LKV +HC+ C +K+ K ++KI+G                                     
Sbjct: 14  LKVNIHCDGCKQKVKKILQKIEG------------------------------------- 73

Query: 64  IETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVN 112
           + T  +D++  KVTV+G+V    +IK L K  K A  W A + NN  N
Sbjct: 74  VFTTKIDSEQGKVTVSGSVDPSVLIKKLAKSGKHAEIWGAPKGNNNPN 84

[Close]

BLAST of MS003375 vs. TAIR 10
Match: AT3G06130.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 41.2 bits (95), Expect = 6.4e-04
Identity = 30/108 (27.78%), Postives = 45/108 (41.67%), Query Frame = 0


Query: 4   LKVGLHCEDCIKKILKAIKKIQGCIQCLHQFLLCLWFKFNEQSIESSVFIFFWGGGRFAD 63
           LKV +HC+ C +K+ K ++KI+G                                     
Sbjct: 14  LKVNIHCDGCKQKVKKILQKIEG------------------------------------- 73

Query: 64  IETYNVDTQLNKVTVTGNVTTEEVIKVLHKISKTAIPWQADEVNNQVN 112
           + T  +D++  KVTV+G+V    +IK L K  K A  W A + NN  N
Sbjct: 74  VFTTKIDSEQGKVTVSGSVDPSVLIKKLAKSGKHAEIWGAPKGNNNPN 84

The following BLAST results are available for this feature:

BLAST of MS003375 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022133451.1	6.6e-27	66.96	copper transport protein ATX1 [Momordica charantia]	[more]
XP_015877508.1	1.5e-18	56.19	heavy metal-associated isoprenylated plant protein 45 [Ziziphus jujuba]	[more]
XP_004138408.1	5.6e-18	55.56	protein SODIUM POTASSIUM ROOT DEFECTIVE 2 [Cucumis sativus]	[more]
KAE8646572.1	5.6e-18	55.56	hypothetical protein Csa_004951, partial [Cucumis sativus]	[more]
KAA0052042.1	9.6e-18	53.15	superoxide dismutase 1 copper chaperone [Cucumis melo var. makuwa] >TYK04519.1 s...	[more]

BLAST of MS003375 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS003375 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BV52	3.2e-27	66.96	copper transport protein ATX1 OS=Momordica charantia OX=3673 GN=LOC111006024 PE=...	[more]
A0A6P3ZEH3	7.1e-19	56.19	heavy metal-associated isoprenylated plant protein 45 OS=Ziziphus jujuba OX=3269...	[more]
A0A0A0K8N1	2.7e-18	55.56	HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013360 PE=4 SV...	[more]
A0A2P2IHW8	2.7e-18	55.14	HMA domain-containing protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A5D3C2A2	4.6e-18	53.15	Superoxide dismutase 1 copper chaperone OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of MS003375 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G05365.1	3.0e-17	47.12	Heavy metal transport/detoxification superfamily protein	[more]
AT3G56891.1	2.9e-04	27.72	Heavy metal transport/detoxification superfamily protein	[more]
AT5G27690.1	3.8e-04	29.36	Heavy metal transport/detoxification superfamily protein	[more]
AT3G06130.1	6.4e-04	27.78	Heavy metal transport/detoxification superfamily protein	[more]
AT3G06130.2	6.4e-04	27.78	Heavy metal transport/detoxification superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 106..112
None	No IPR available	GENE3D	3.30.70.100		coord: 1..99 e-value: 5.5E-14 score: 54.2
None	No IPR available	PANTHER	PTHR22814	COPPER TRANSPORT PROTEIN ATOX1-RELATED	coord: 1..107
None	No IPR available	PANTHER	PTHR22814:SF304	HEAVY METAL TRANSPORT/DETOXIFICATION SUPERFAMILY PROTEIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003375.1	MS003375.1	mRNA