MS003369 (gene) Bitter gourd (TR) v1

Overview
NameMS003369
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionHIG1 domain-containing protein
Locationscaffold234: 2391674 .. 2392227 (+)
RNA-Seq ExpressionMS003369
SyntenyMS003369
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCAATTCAATCCTGGGTTTCTCAGCACAAACTCACCAGCATTGGTAACTTCTCCTCTCTTTTATCTCCTCCGACGCTTTTCAATTTTATGTTCGTATTTCCTTAAAAGAGATGCTTTACCACTAAAGCTGAAAGGGATGAGAGTGTTAATTTGCAAAATTTATTAGGGATGCAGCAATATATTATAAATTAAAAAAAAAAAAAAAGTTTGGATAAAATTTGGGTGTTTATCTTTATAGGAGCGCTATGGGCATCTGGGATCGGAGCATCACTGGCGTACACCCGATCGAGGACTCCCCTGAAGCCAAGTCTCCGGCTTATACATGCCAGGTATATTTTTATTAATTATATACCCGACAAATATATACAAAATAAAAATTTAGAGCTAATTTCTTTTTATAAAATGGATCGAGAATTTTATTTTACTGAAATTAATGGAAGTTTGTTTTTTGCGTCAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGGCGACCGACCGGAG

mRNA sequence

ATGGAAGCAATTCAATCCTGGGTTTCTCAGCACAAACTCACCAGCATTGGAGCGCTATGGGCATCTGGGATCGGAGCATCACTGGCGTACACCCGATCGAGGACTCCCCTGAAGCCAAGTCTCCGGCTTATACATGCCAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGGCGACCGACCGGAG

Coding sequence (CDS)

ATGGAAGCAATTCAATCCTGGGTTTCTCAGCACAAACTCACCAGCATTGGAGCGCTATGGGCATCTGGGATCGGAGCATCACTGGCGTACACCCGATCGAGGACTCCCCTGAAGCCAAGTCTCCGGCTTATACATGCCAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGAAAGCCGCCGGCGACCGACCGGAG

Protein sequence

MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKKAAGDRPE
Homology
BLAST of MS003369 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 140.2 bits (352), Expect = 7.5e-30
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0

Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVSQHKLTSIGALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 78
          AAVYHYYE K+AG R E
Sbjct: 61 AAVYHYYENKSAGVRSE 77

BLAST of MS003369 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 140.2 bits (352), Expect = 7.5e-30
Identity = 71/77 (92.21%), Postives = 73/77 (94.81%), Query Frame = 0

Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVSQHKLTSIGALWASGIGASLAYTRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 78
          AAVYHYYE K+AG R E
Sbjct: 61 AAVYHYYENKSAGVRSE 77

BLAST of MS003369 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-29
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0

Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLT+IGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 78
          AAVYHYY+ K   DR E
Sbjct: 61 AAVYHYYDNKIGRDRSE 77

BLAST of MS003369 vs. NCBI nr
Match: KAA0052029.1 (respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04531.1 respiratory supercomplex factor 2-like protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.1e-28
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0

Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLT+IGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 78
          AAVYHYY+ K   DR E
Sbjct: 61 AAVYHYYDNKFGNDRSE 77

BLAST of MS003369 vs. NCBI nr
Match: XP_038886475.1 (uncharacterized protein LOC120076661 [Benincasa hispida])

HSP 1 Score: 134.8 bits (338), Expect = 3.1e-28
Identity = 69/77 (89.61%), Postives = 71/77 (92.21%), Query Frame = 0

Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ WVS+HKLT+IGALWASGIGASLAYTRSRT LKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQVWVSEHKLTTIGALWASGIGASLAYTRSRTLLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 78
          AAVYHYYE K AG R E
Sbjct: 61 AAVYHYYEDKLAGGRSE 77

BLAST of MS003369 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 68/77 (88.31%), Postives = 72/77 (93.51%), Query Frame = 0

Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLT+IGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 78
          AAVYHYY+ K   DR E
Sbjct: 61 AAVYHYYDNKIGRDRSE 77

BLAST of MS003369 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.2e-29
Identity = 67/77 (87.01%), Postives = 72/77 (93.51%), Query Frame = 0

Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLT+IGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 78
          AAVYHYY+ K   DR E
Sbjct: 61 AAVYHYYDNKFGNDRSE 77

BLAST of MS003369 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.9e-27
Identity = 63/70 (90.00%), Postives = 69/70 (98.57%), Query Frame = 0

Query: 1   MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+QSWVS+HKLTSIG LWASGIGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYEKK 71
           AAVYHYYEK+
Sbjct: 98  AAVYHYYEKR 107

BLAST of MS003369 vs. ExPASy TrEMBL
Match: A0A5J5AU49 (HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 62/71 (87.32%), Postives = 68/71 (95.77%), Query Frame = 0

Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+QSWVS+HKLTSIG LWAS IGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEALQSWVSEHKLTSIGTLWASAIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKA 72
          AA YHYYEK+A
Sbjct: 61 AAAYHYYEKRA 71

BLAST of MS003369 vs. ExPASy TrEMBL
Match: A0A2R6RWM7 (HIG1 domain family member 1B like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc01526 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.9e-26
Identity = 63/77 (81.82%), Postives = 71/77 (92.21%), Query Frame = 0

Query: 1  MEAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEA+QSWVSQHKLTSIG +W S IGASLAY+R++TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEALQSWVSQHKLTSIGTIWVSAIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKKAAGDRPE 78
          AAVYHYYEK+  G++ E
Sbjct: 61 AAVYHYYEKR-TGEQAE 76

BLAST of MS003369 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 85.1 bits (209), Expect = 2.7e-17
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 0

Query: 2  EAIQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVS HKL ++G LW SGI  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYEKK 71
          AV  YY+ K
Sbjct: 69 AVVEYYDHK 77

BLAST of MS003369 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 83.2 bits (204), Expect = 1.0e-16
Identity = 40/73 (54.79%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 4  IQSWVSQHKLTSIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ +HKL ++G LW SGI  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYE-KKAAGDR 76
            YY+ K  A DR
Sbjct: 71 VEYYDHKSGATDR 83

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6578469.17.5e-3092.21hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7016034.17.5e-3092.21BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_004138401.16.3e-2988.31uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ... [more]
KAA0052029.11.1e-2887.01respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04... [more]
XP_038886475.13.1e-2889.61uncharacterized protein LOC120076661 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K7T43.1e-2988.31HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S... [more]
A0A5A7UEZ15.2e-2987.01Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11... [more]
A0A7J7I5092.9e-2790.00HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4... [more]
A0A5J5AU491.4e-2687.32HIG1 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_031517 PE=4 ... [more]
A0A2R6RWM71.9e-2681.82HIG1 domain family member 1B like OS=Actinidia chinensis var. chinensis OX=15908... [more]
Match NameE-valueIdentityDescription
AT3G05550.12.7e-1757.97Hypoxia-responsive family protein [more]
AT5G27760.11.0e-1654.79Hypoxia-responsive family protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.140.1320coord: 13..71
e-value: 1.2E-6
score: 30.2
NoneNo IPR availablePANTHERPTHR28018:SF3RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIALcoord: 4..71
IPR007667Hypoxia induced protein, domainPFAMPF04588HIG_1_Ncoord: 11..59
e-value: 1.1E-8
score: 35.2
IPR007667Hypoxia induced protein, domainPROSITEPS51503HIG1coord: 1..76
score: 19.792089
IPR040153Respiratory supercomplex factor 2, mitochondrialPANTHERPTHR28018RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIALcoord: 4..71

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003369.1MS003369.1mRNA