MS003357 (gene) Bitter gourd (TR) v1

Overview


Name	MS003357
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S26
Location	scaffold234: 2334702 .. 2335432 (+)
RNA-Seq Expression	MS003357
Synteny	MS003357

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGTACCTAGGGTTCTTTTGTCATCTCTCGCCGTTTCATCTATGCTTATCATATGCCAAAATTGGATATATCTTTCTGTCGTTGTTGATAATTAGGGTTTGTAGGTTTATCTTTGTAGTGCCCTTTCTGATCTGTAGCAGCTAAACAGTGTATAATCATCTTTTAATTTTTGCGCGACGCTTGTTCATAATAATAGCGATTGATTTCGTTTTATCGTAGAACTAAGATTCGACTAATTTGAAATCGATGTGTTTTTTCCTATTATCTGAGTGATTTGGTTCAGTGTTTGAAATATAATATCTAATGTTGAGGTTTCTTATATGCGCGATTAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTCTATGATCGTAGGATCCCTTTCTTGAACGCTTTCTTTCTTTGTCTTCCACTATTGCAACTTCAGTGATAATTTCAATGATTGTTTTTGGTACAGAGTACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACTGCGTTTCCTGTGCCATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG

mRNA sequence

CAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTCTATGATCAGTACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACTGCGTTTCCTGTGCCATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG

Coding sequence (CDS)

CAGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGCTCCAACTGCGGCAAATGCTGCCCCAAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATCGTGGAGCAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTCTATGATCAGTACACTCTTCCTAAGCTGTATGCTAAGATGCAGTACTGCGTTTCCTGTGCCATTCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGCTTCATTAGACGCAGG

Protein sequence

QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR

Homology

[Close]

BLAST of MS003357 vs. NCBI nr
Match: XP_022134511.1 (40S ribosomal protein S26-1-like [Momordica charantia])

HSP 1 Score: 215.3 bits (547), Expect = 2.5e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MS003357 vs. NCBI nr
Match: XP_022939944.1 (40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S ribosomal protein S26-3-like [Cucurbita maxima] >XP_023549643.1 40S ribosomal protein S26-3-like [Cucurbita pepo subsp. pepo] >KAG6578479.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215.3 bits (547), Expect = 2.5e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MS003357 vs. NCBI nr
Match: KAG7016042.1 (40S ribosomal protein S26-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.3 bits (547), Expect = 2.5e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MS003357 vs. NCBI nr
Match: KYP69480.1 (40S ribosomal protein S26-1, partial [Cajanus cajan])

HSP 1 Score: 214.2 bits (544), Expect = 5.6e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MS003357 vs. NCBI nr
Match: RZB57216.1 (40S ribosomal protein S26-1 [Glycine soja])

HSP 1 Score: 214.2 bits (544), Expect = 5.6e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 30  QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 89

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 90  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 134

[Close]

BLAST of MS003357 vs. ExPASy Swiss-Prot
Match: Q9LYK9 (40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-46
Identity = 90/104 (86.54%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MS003357 vs. ExPASy Swiss-Prot
Match: P49206 (40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-45
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

[Close]

BLAST of MS003357 vs. ExPASy Swiss-Prot
Match: Q8LPJ7 (40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-45
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MS003357 vs. ExPASy Swiss-Prot
Match: P49216 (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2 SV=2)

HSP 1 Score: 181.0 bits (458), Expect = 6.8e-45
Identity = 85/103 (82.52%), Postives = 94/103 (91.26%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D 
Sbjct: 2   TFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHDG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRR 105
           Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR R PP+RF RR
Sbjct: 62  YVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERFRRR 104

[Close]

BLAST of MS003357 vs. ExPASy Swiss-Prot
Match: O45499 (40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 3.4e-36
Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y Q
Sbjct: 2   TFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYTQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRR 105
           Y LPKLY K+ YC++CAIHS VVR RSR  RR R+PP RF +R
Sbjct: 62  YALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRFGQR 104

[Close]

BLAST of MS003357 vs. ExPASy TrEMBL
Match: A0A6J1K0V7 (40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MS003357 vs. ExPASy TrEMBL
Match: A0A6J1BXZ8 (40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MS003357 vs. ExPASy TrEMBL
Match: A0A6J1FIL8 (40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.2e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ
Sbjct: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MS003357 vs. ExPASy TrEMBL
Match: A0A151TR17 (40S ribosomal protein S26 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008670 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.7e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 5   QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 64

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 65  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 109

[Close]

BLAST of MS003357 vs. ExPASy TrEMBL
Match: A0A151TR30 (40S ribosomal protein S26 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008671 PE=3 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 2.7e-52
Identity = 103/105 (98.10%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   QTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 105

[Close]

BLAST of MS003357 vs. TAIR 10
Match: AT3G56340.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 184.9 bits (468), Expect = 3.4e-47
Identity = 90/104 (86.54%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MS003357 vs. TAIR 10
Match: AT2G40510.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-46
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRK 105

[Close]

BLAST of MS003357 vs. TAIR 10
Match: AT2G40590.1 (Ribosomal protein S26e family protein )

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-46
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0


Query: 2   TFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQ 61
           TFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ 
Sbjct: 2   TFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYEG 61

Query: 62  YTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRR 106
           YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR+
Sbjct: 62  YTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRK 105

The following BLAST results are available for this feature:

BLAST of MS003357 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134511.1	2.5e-52	100.00	40S ribosomal protein S26-1-like [Momordica charantia]	[more]
XP_022939944.1	2.5e-52	100.00	40S ribosomal protein S26-3-like [Cucurbita moschata] >XP_022993709.1 40S riboso...	[more]
KAG7016042.1	2.5e-52	100.00	40S ribosomal protein S26-3, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
KYP69480.1	5.6e-52	98.10	40S ribosomal protein S26-1, partial [Cajanus cajan]	[more]
RZB57216.1	5.6e-52	98.10	40S ribosomal protein S26-1 [Glycine soja]	[more]

BLAST of MS003357 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LYK9	4.7e-46	86.54	40S ribosomal protein S26-3 OS=Arabidopsis thaliana OX=3702 GN=RPS26C PE=2 SV=1	[more]
P49206	1.8e-45	85.58	40S ribosomal protein S26-1 OS=Arabidopsis thaliana OX=3702 GN=RPS26A PE=2 SV=2	[more]
Q8LPJ7	1.8e-45	85.58	40S ribosomal protein S26-2 OS=Arabidopsis thaliana OX=3702 GN=RPS26B PE=2 SV=2	[more]
P49216	6.8e-45	82.52	40S ribosomal protein S26 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS26 PE=2...	[more]
O45499	3.4e-36	70.87	40S ribosomal protein S26 OS=Caenorhabditis elegans OX=6239 GN=rps-26 PE=3 SV=1	[more]

BLAST of MS003357 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K0V7	1.2e-52	100.00	40S ribosomal protein S26 OS=Cucurbita maxima OX=3661 GN=LOC111489626 PE=3 SV=1	[more]
A0A6J1BXZ8	1.2e-52	100.00	40S ribosomal protein S26 OS=Momordica charantia OX=3673 GN=LOC111006736 PE=3 SV...	[more]
A0A6J1FIL8	1.2e-52	100.00	40S ribosomal protein S26 OS=Cucurbita moschata OX=3662 GN=LOC111445657 PE=3 SV=...	[more]
A0A151TR17	2.7e-52	98.10	40S ribosomal protein S26 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008670 PE=3...	[more]
A0A151TR30	2.7e-52	98.10	40S ribosomal protein S26 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_008671 PE=3...	[more]

BLAST of MS003357 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56340.1	3.4e-47	86.54	Ribosomal protein S26e family protein	[more]
AT2G40510.1	1.3e-46	85.58	Ribosomal protein S26e family protein	[more]
AT2G40590.1	1.3e-46	85.58	Ribosomal protein S26e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038551	Ribosomal protein S26e superfamily	GENE3D	3.30.1740.20	Ribosomal protein S26e	coord: 1..105 e-value: 1.5E-55 score: 188.5
IPR000892	Ribosomal protein S26e	PFAM	PF01283	Ribosomal_S26e	coord: 2..104 e-value: 3.2E-53 score: 178.7
IPR000892	Ribosomal protein S26e	PANTHER	PTHR12538	40S RIBOSOMAL PROTEIN S26	coord: 2..105
IPR000892	Ribosomal protein S26e	PROSITE	PS00733	RIBOSOMAL_S26E	coord: 73..80
None	No IPR available	PANTHER	PTHR12538:SF16	40S RIBOSOMAL PROTEIN S26	coord: 2..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003357.1	MS003357.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome