MS003119 (gene) Bitter gourd (TR) v1

Overview


Name	MS003119
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	LOB domain-containing protein
Location	scaffold234: 540974 .. 541315 (+)
RNA-Seq Expression	MS003119
Synteny	MS003119

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTCAAGTTCAAGCTACTCGAACTCGCCATGTGCGGCATGCAAGTTCTTGAGAAGAAAATGTTTAGCAGAATGCATATTCGCGCCCTACTTCCCACCCGAGGAGCCGACCAAATTCGCCAACGTCCACAAGATATTCGGAGCGAGCAATGTGAGCAAGATCCTCAACGAGGTCCAGCCCCACCAGCGGGAGGACGCTGTAAACTCTCTTGCCTACGAGGCTGAGGCCCGCATGAAAGACCCTGTCTACGGCTGCGTCGGTGCCATCTCCGTCCTCCAGCGTCACGTCCTTCGTCTTCAGAAGGAACTCGACGCCACCAATGCTGATTTGGTTCGATACTCC

mRNA sequence

TGTTCAAGTTCAAGCTACTCGAACTCGCCATGTGCGGCATGCAAGTTCTTGAGAAGAAAATGTTTAGCAGAATGCATATTCGCGCCCTACTTCCCACCCGAGGAGCCGACCAAATTCGCCAACGTCCACAAGATATTCGGAGCGAGCAATGTGAGCAAGATCCTCAACGAGGTCCAGCCCCACCAGCGGGAGGACGCTGTAAACTCTCTTGCCTACGAGGCTGAGGCCCGCATGAAAGACCCTGTCTACGGCTGCGTCGGTGCCATCTCCGTCCTCCAGCGTCACGTCCTTCGTCTTCAGAAGGAACTCGACGCCACCAATGCTGATTTGGTTCGATACTCC

Coding sequence (CDS)

TGTTCAAGTTCAAGCTACTCGAACTCGCCATGTGCGGCATGCAAGTTCTTGAGAAGAAAATGTTTAGCAGAATGCATATTCGCGCCCTACTTCCCACCCGAGGAGCCGACCAAATTCGCCAACGTCCACAAGATATTCGGAGCGAGCAATGTGAGCAAGATCCTCAACGAGGTCCAGCCCCACCAGCGGGAGGACGCTGTAAACTCTCTTGCCTACGAGGCTGAGGCCCGCATGAAAGACCCTGTCTACGGCTGCGTCGGTGCCATCTCCGTCCTCCAGCGTCACGTCCTTCGTCTTCAGAAGGAACTCGACGCCACCAATGCTGATTTGGTTCGATACTCC

Protein sequence

CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS

Homology

[Close]

BLAST of MS003119 vs. NCBI nr
Match: XP_022134199.1 (LOB domain-containing protein 25-like [Momordica charantia])

HSP 1 Score: 231.5 bits (589), Expect = 3.7e-57
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQP 60
           CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKF NVHKIFGASNVSKILNEVQP
Sbjct: 3   CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFTNVHKIFGASNVSKILNEVQP 62

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           HQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATN DLVRYS
Sbjct: 63  HQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNTDLVRYS 116

[Close]

BLAST of MS003119 vs. NCBI nr
Match: XP_038890699.1 (LOB domain-containing protein 25-like [Benincasa hispida] >XP_038890700.1 LOB domain-containing protein 25-like [Benincasa hispida])

HSP 1 Score: 223.4 bits (568), Expect = 1.0e-54
Identity = 107/113 (94.69%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           +SSSYSNSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPH
Sbjct: 2   ASSSYSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPH 61

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           QREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQKELDATNADLVRY+
Sbjct: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYA 114

[Close]

BLAST of MS003119 vs. NCBI nr
Match: KAA0037575.1 (LOB domain-containing protein 25 [Cucumis melo var. makuwa] >TYK03097.1 LOB domain-containing protein 25 [Cucumis melo var. makuwa])

HSP 1 Score: 222.2 bits (565), Expect = 2.2e-54
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPH
Sbjct: 2   ASSSYTNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPH 61

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           QREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQKELDATNADLVRY+
Sbjct: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYA 114

[Close]

BLAST of MS003119 vs. NCBI nr
Match: XP_011655399.1 (LOB domain-containing protein 25 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.2e-54
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPH
Sbjct: 2   ASSSYTNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPH 61

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           QREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQKELDATNADLVRY+
Sbjct: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYA 114

[Close]

BLAST of MS003119 vs. NCBI nr
Match: KAE8648553.1 (hypothetical protein Csa_009000 [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 2.2e-54
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPH
Sbjct: 2   ASSSYTNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPH 61

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           QREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQKELDATNADLVRY+
Sbjct: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYA 114

[Close]

BLAST of MS003119 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 205.3 bits (521), Expect = 3.7e-52
Identity = 95/111 (85.59%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 4   SSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQR 63
           S+Y+NSPCAACKFLRRKC ++C+FAPYFPPEEPTKFANVH+IFGASNVSKIL+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 64  EDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           EDAVNSLAYEAEAR+KDPVYGCVGAISVLQR VLRLQ+EL+ TNADL+RY+
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of MS003119 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.4e-48
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           SSS+  NSPCAACKFLRRKC+  CIFAPYFPPEEP KFANVHKIFGASNV+K+LNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRY 114
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQR V RLQKELDA NADL  Y
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHY 114

[Close]

BLAST of MS003119 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.0e-41
Identity = 75/111 (67.57%), Postives = 94/111 (84.68%), Query Frame = 0


Query: 3   SSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQ 62
           +SS +NSPCAACKFLRRKC  EC+FAPYFPP++P KFANVHK+FGASNV+K+LNE+ P Q
Sbjct: 2   ASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQ 61

Query: 63  REDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRY 114
           REDAVNSLAYEA+ R++DPVYGCVG IS+LQ  + +LQ +L    ++L +Y
Sbjct: 62  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

[Close]

BLAST of MS003119 vs. ExPASy Swiss-Prot
Match: A2WXT0 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.8e-38
Identity = 68/107 (63.55%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 7   SNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDA 66
           + SPCAACKFLRRKC  +C+FAPYFPP+ P KF +VH++FGASNV+K+LNE+ P+QREDA
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 67  VNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRY 114
           VNSLAYEA+ R++DPVYGCV  IS+LQR++ +LQ++L     +L +Y
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

[Close]

BLAST of MS003119 vs. ExPASy Swiss-Prot
Match: Q8LQH4 (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6 PE=2 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 8.8e-38
Identity = 68/107 (63.55%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 7   SNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQREDA 66
           + SPCAACKFLRRKC  +C+FAPYFPP+ P KF +VH++FGASNV+K+LNE+ P+QREDA
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 67  VNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRY 114
           VNSLAYEA+ R++DPVYGCV  IS+LQR++ +LQ++L     +L +Y
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKY 141

[Close]

BLAST of MS003119 vs. ExPASy TrEMBL
Match: A0A6J1BY47 (LOB domain-containing protein 25-like OS=Momordica charantia OX=3673 GN=LOC111006519 PE=3 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 1.8e-57
Identity = 112/114 (98.25%), Postives = 112/114 (98.25%), Query Frame = 0


Query: 1   CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQP 60
           CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKF NVHKIFGASNVSKILNEVQP
Sbjct: 3   CSSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFTNVHKIFGASNVSKILNEVQP 62

Query: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           HQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATN DLVRYS
Sbjct: 63  HQREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNTDLVRYS 116

[Close]

BLAST of MS003119 vs. ExPASy TrEMBL
Match: A0A1S3C8P8 (LOB domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC103498101 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPH
Sbjct: 2   ASSSYTNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPH 61

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           QREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQKELDATNADLVRY+
Sbjct: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYA 114

[Close]

BLAST of MS003119 vs. ExPASy TrEMBL
Match: A0A5A7T800 (LOB domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00190 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPH
Sbjct: 2   ASSSYTNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPH 61

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           QREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQKELDATNADLVRY+
Sbjct: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYA 114

[Close]

BLAST of MS003119 vs. ExPASy TrEMBL
Match: A0A0A0KSE8 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G523080 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 106/113 (93.81%), Postives = 112/113 (99.12%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           +SSSY+NSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+LNEVQPH
Sbjct: 2   ASSSYTNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPH 61

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           QREDAVNSLAYEAEARMKDPVYGCVGAISVLQR V+RLQKELDATNADLVRY+
Sbjct: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRQVIRLQKELDATNADLVRYA 114

[Close]

BLAST of MS003119 vs. ExPASy TrEMBL
Match: A0A6J1JRR4 (LOB domain-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111487747 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.1e-54
Identity = 105/113 (92.92%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           SSSSYSNSPCAACKFLRRKCLA+CIFAPYFPPEEPTKFANVHKIFGASNVSK+L+EV PH
Sbjct: 3   SSSSYSNSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLHEVHPH 62

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           QREDAVNSLAYEAEARMKDPVYGCVGAIS+LQR V+RLQKELDATNADLVRY+
Sbjct: 63  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIRLQKELDATNADLVRYA 115

[Close]

BLAST of MS003119 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 205.3 bits (521), Expect = 2.6e-53
Identity = 95/111 (85.59%), Postives = 107/111 (96.40%), Query Frame = 0


Query: 4   SSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPHQR 63
           S+Y+NSPCAACKFLRRKC ++C+FAPYFPPEEPTKFANVH+IFGASNVSKIL+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 64  EDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRYS 115
           EDAVNSLAYEAEAR+KDPVYGCVGAISVLQR VLRLQ+EL+ TNADL+RY+
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of MS003119 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-49
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           SSS+  NSPCAACKFLRRKC+  CIFAPYFPPEEP KFANVHKIFGASNV+K+LNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRY 114
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQR V RLQKELDA NADL  Y
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHY 114

[Close]

BLAST of MS003119 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-49
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           SSS+  NSPCAACKFLRRKC+  CIFAPYFPPEEP KFANVHKIFGASNV+K+LNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRY 114
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQR V RLQKELDA NADL  Y
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHY 114

[Close]

BLAST of MS003119 vs. TAIR 10
Match: AT5G63090.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-49
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           SSS+  NSPCAACKFLRRKC+  CIFAPYFPPEEP KFANVHKIFGASNV+K+LNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRY 114
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQR V RLQKELDA NADL  Y
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHY 114

[Close]

BLAST of MS003119 vs. TAIR 10
Match: AT5G63090.4 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 193.4 bits (490), Expect = 1.0e-49
Identity = 93/112 (83.04%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 2   SSSSYSNSPCAACKFLRRKCLAECIFAPYFPPEEPTKFANVHKIFGASNVSKILNEVQPH 61
           SSS+  NSPCAACKFLRRKC+  CIFAPYFPPEEP KFANVHKIFGASNV+K+LNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 62  QREDAVNSLAYEAEARMKDPVYGCVGAISVLQRHVLRLQKELDATNADLVRY 114
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQR V RLQKELDA NADL  Y
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHY 114

The following BLAST results are available for this feature:

BLAST of MS003119 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134199.1	3.7e-57	98.25	LOB domain-containing protein 25-like [Momordica charantia]	[more]
XP_038890699.1	1.0e-54	94.69	LOB domain-containing protein 25-like [Benincasa hispida] >XP_038890700.1 LOB do...	[more]
KAA0037575.1	2.2e-54	93.81	LOB domain-containing protein 25 [Cucumis melo var. makuwa] >TYK03097.1 LOB doma...	[more]
XP_011655399.1	2.2e-54	93.81	LOB domain-containing protein 25 [Cucumis sativus]	[more]
KAE8648553.1	2.2e-54	93.81	hypothetical protein Csa_009000 [Cucumis sativus]	[more]

BLAST of MS003119 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8Q3	3.7e-52	85.59	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
Q9FML4	1.4e-48	83.04	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
O04479	5.0e-41	67.57	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
A2WXT0	8.8e-38	63.55	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]
Q8LQH4	8.8e-38	63.55	LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6...	[more]

BLAST of MS003119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BY47	1.8e-57	98.25	LOB domain-containing protein 25-like OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A1S3C8P8	1.1e-54	93.81	LOB domain-containing protein 25 OS=Cucumis melo OX=3656 GN=LOC103498101 PE=3 SV...	[more]
A0A5A7T800	1.1e-54	93.81	LOB domain-containing protein 25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A0A0KSE8	1.1e-54	93.81	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G523080 PE=3 SV...	[more]
A0A6J1JRR4	4.1e-54	92.92	LOB domain-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC11148774...	[more]

BLAST of MS003119 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27650.1	2.6e-53	85.59	LOB domain-containing protein 25	[more]
AT5G63090.2	1.0e-49	83.04	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	1.0e-49	83.04	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.1	1.0e-49	83.04	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.4	1.0e-49	83.04	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 89..109
None	No IPR available	PANTHER	PTHR31301:SF12	LOB DOMAIN-CONTAINING PROTEIN 25	coord: 3..114
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 3..114
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 10..106 e-value: 8.4E-42 score: 141.8
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 9..110 score: 27.36132

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS003119.1	MS003119.1	mRNA