MS003115 (gene) Bitter gourd (TR) v1

Overview
NameMS003115
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionNuclear pore membrane glycoprotein 210-like
Locationscaffold234: 508638 .. 510400 (-)
RNA-Seq ExpressionMS003115
SyntenyMS003115
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTCCAAGTTTCTTGCAGAAGGAAAGAAAAGGAGCGCAACAATTTCGACCCGTACAAAGTCATTGAAATCACTCCTCCGCCGAAGAATCTCGGCATTCGCTGCTTTCCGCCCGTAAGTGTTCCATTGTCTTTGAACTACAGATTGGCTTTCCGACACGAACATCCGTTGTACTACTGACGTTGTGAATATGAGCTTAAGATTATGCGTCTACTTTCATTTTTTCGAGTCGGCATTAGAAAAATTTAATACATAGAGGTTTTAGGATTAGGAGGACACTTTGTGATTTTGGTCAATGTATTTTACCTTTATGCTAATTTTGTTCGGCGAGTAGCCCGTTTTCATTAGTTTTTCATAAAGTGGAAACAATAGATTTATTGGAAGTTGATTAGATACGATTTCTTAGCCTTACCACATGAAAAAAACATCACCCGTAGATGTTTTCGGCTAATCCGTAGCCCGTGGACGTTAAATATGTGCACCAACCATACTATAATACACTGAGAGACATCAATCAATCACGAAGCTTTTGACTATGGAGTTATGAAGTTGTATGGATTGTCAAACGACTAATACAAGTGTCACTTTGTTTTTGAGTTTTGGTTTATAAAAGGTTTAATCTAATACCACTGTTCTGAAGAATTAAAGTAGAGTTGATTGGTAGACTTCAACCTCTGATTACCTTGTGACTTGGTCGTGGGATTGTTCTACTTGGTAGGAATAGGATCTCGTGGTCCTGAAATATTCCTATTTTTTCAGGTTGCATGTACCTTGCTTAAGCTACTGAGTTCATTCACCTATTCTTTCACCTTTTTGTTTTTTTAGGTACAAGCTATGCATAACTTGAGAGCAGTGATACCCCTCATCATATTAAATGCCTTATTTGTAGTCTTTCTCTCAAACCTAGGGCTTGGTCTTGTGCAATCAAGGTGGGAAGTTTGGTTGGAAAGAAATATCAAAACCTTCAAGAATAAATTTAGAAATTGGTAGAGTTGTAGGGCATCTTTCATTCTTTTTATCCCTTCTGGCTTCTTGGTGTACTCTTTCATCTCTCATGTATCTCCGTTTCTTTTTTAATTTAATAACAATTGGAGCGATAAACCTAAGGTTCACTCGTAACCGTACTTGAACAAGATCTTGTTCTATAAGTTGTACGTGTACCTCTGTGTTCTTGAGTTATAAAAAAGGCCTAAGGTTCACTCTAAAGCAACAAGTTGTTGAACTGTTTTAAGGTCAAGGACAACTAATGAGCAAGACGTGTGTAAATAAATAAATAAATAAAATTATAAACAAGCAGGGAAAATTTTGTTGTACGTGGTACTCGCCTCACTTGTCTTCGACAGTGTTGAAAGGTGCAACAACAGTGTGCTTGGCGAGCACCACAGCGAAGACACTCGCTAAAGCTCTATAAAATACGAGAAACAACGACACTGCCTTGGCTTTGCCATGAACCATAAGTCACTCTCTAACAAACTTTGTGTTCTTTATTTTTTCTATAGTTCAGTTATCAATATAGTTTTGTTTCTTATCTATAGGGGGAAAAGGCATGAATCATCTTTTGTCTTACTGTCATTTTGGTCTTCTTTCAGAACTTACAATGTGGGGAGAGTGTGACAATAGAAGGCCAAACATACACCATCTCAGCTGTAACTCATCGCTATCAGCTCAGGAAGGGGAAGTATGAGCCAACTGAAAAGAGACTTGATGTTTTGTCCACAGGGAGGTATATATTGAACTTGTATCTAGAAAATTTATTAGAAAAATCT

mRNA sequence

CTCCAAGTTTCTTGCAGAAGGAAAGAAAAGGAGCGCAACAATTTCGACCCGTACAAAGTCATTGAAATCACTCCTCCGCCGAAGAATCTCGGCATTCGCTGCTTTCCGCCCAACTTACAATGTGGGGAGAGTGTGACAATAGAAGGCCAAACATACACCATCTCAGCTGTAACTCATCGCTATCAGCTCAGGAAGGGGAAGTATGAGCCAACTGAAAAGAGACTTGATGTTTTGTCCACAGGGAGGTATATATTGAACTTGTATCTAGAAAATTTATTAGAAAAATCT

Coding sequence (CDS)

CTCCAAGTTTCTTGCAGAAGGAAAGAAAAGGAGCGCAACAATTTCGACCCGTACAAAGTCATTGAAATCACTCCTCCGCCGAAGAATCTCGGCATTCGCTGCTTTCCGCCCAACTTACAATGTGGGGAGAGTGTGACAATAGAAGGCCAAACATACACCATCTCAGCTGTAACTCATCGCTATCAGCTCAGGAAGGGGAAGTATGAGCCAACTGAAAAGAGACTTGATGTTTTGTCCACAGGGAGGTATATATTGAACTTGTATCTAGAAAATTTATTAGAAAAATCT

Protein sequence

LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
Homology
[Close]
BLAST of MS003115 vs. NCBI nr
Match: XP_022133646.1 (uncharacterized protein LOC111006184 [Momordica charantia])

HSP 1 Score: 201.8 bits (512), Expect = 2.6e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1   LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHR 60
           LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHR
Sbjct: 17  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHR 76

Query: 61  YQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           YQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 77  YQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 112

[Close]
BLAST of MS003115 vs. NCBI nr
Match: KAG6578668.1 (hypothetical protein SDJN03_23116, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016208.1 hypothetical protein SDJN02_21313, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 194.5 bits (493), Expect = 4.2e-46
Identity = 92/96 (95.83%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1   LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHR 60
           LQ+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT R
Sbjct: 41  LQISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTLR 100

Query: 61  YQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           YQLRKGKYEP+EKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 101 YQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 136

[Close]
BLAST of MS003115 vs. NCBI nr
Match: XP_004142788.1 (uncharacterized protein LOC101221627 [Cucumis sativus] >KGN51358.1 hypothetical protein Csa_009241 [Cucumis sativus])

HSP 1 Score: 194.1 bits (492), Expect = 5.4e-46
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 2   QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRY 61
           Q+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RY
Sbjct: 21  QISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTLRY 80

Query: 62  QLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           QLRKGKYEP+EKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 81  QLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]
BLAST of MS003115 vs. NCBI nr
Match: XP_008458808.1 (PREDICTED: uncharacterized protein LOC103498107 [Cucumis melo])

HSP 1 Score: 194.1 bits (492), Expect = 5.4e-46
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 2   QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRY 61
           Q+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RY
Sbjct: 21  QISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTLRY 80

Query: 62  QLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           QLRKGKYEP+EKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 81  QLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]
BLAST of MS003115 vs. NCBI nr
Match: XP_022993339.1 (uncharacterized protein LOC111489380 [Cucurbita maxima] >XP_023551188.1 uncharacterized protein LOC111809077 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.6 bits (488), Expect = 1.6e-45
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1   LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHR 60
           LQ+ CRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT R
Sbjct: 19  LQICCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTLR 78

Query: 61  YQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           YQLRKGKYEP+EKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 79  YQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 114

[Close]
BLAST of MS003115 vs. ExPASy TrEMBL
Match: A0A6J1BVQ0 (uncharacterized protein LOC111006184 OS=Momordica charantia OX=3673 GN=LOC111006184 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.3e-48
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1   LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHR 60
           LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHR
Sbjct: 17  LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHR 76

Query: 61  YQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           YQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 77  YQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 112

[Close]
BLAST of MS003115 vs. ExPASy TrEMBL
Match: A0A0A0KP15 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523040 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-46
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 2   QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRY 61
           Q+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RY
Sbjct: 21  QISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTLRY 80

Query: 62  QLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           QLRKGKYEP+EKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 81  QLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]
BLAST of MS003115 vs. ExPASy TrEMBL
Match: A0A1S3C8Q2 (uncharacterized protein LOC103498107 OS=Cucumis melo OX=3656 GN=LOC103498107 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 2.6e-46
Identity = 92/95 (96.84%), Postives = 94/95 (98.95%), Query Frame = 0 

Query: 2   QVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHRY 61
           Q+SCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT RY
Sbjct: 21  QISCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTLRY 80

Query: 62  QLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           QLRKGKYEP+EKRLDVLSTGRYILNLYLENLLEKS
Sbjct: 81  QLRKGKYEPSEKRLDVLSTGRYILNLYLENLLEKS 115

[Close]
BLAST of MS003115 vs. ExPASy TrEMBL
Match: A0A6J1JZX4 (uncharacterized protein LOC111489380 OS=Cucurbita maxima OX=3661 GN=LOC111489380 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 7.7e-46
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1   LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHR 60
           LQ+ CRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT R
Sbjct: 19  LQICCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTLR 78

Query: 61  YQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           YQLRKGKYEP+EKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 79  YQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 114

[Close]
BLAST of MS003115 vs. ExPASy TrEMBL
Match: A0A6J1FGM6 (uncharacterized protein LOC111445315 OS=Cucurbita moschata OX=3662 GN=LOC111445315 PE=4 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 1.3e-45
Identity = 90/96 (93.75%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1   LQVSCRRKEKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTHR 60
           LQ+ CRRK+KERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVT R
Sbjct: 19  LQIDCRRKDKERNNFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTLR 78

Query: 61  YQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           YQLRKGKYEP+EKRLDVLSTGRYILNLYL+NLLEKS
Sbjct: 79  YQLRKGKYEPSEKRLDVLSTGRYILNLYLQNLLEKS 114

[Close]
BLAST of MS003115 vs. TAIR 10
Match: AT5G40500.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 157.5 bits (397), Expect = 5.3e-39
Identity = 74/97 (76.29%), Postives = 86/97 (88.66%), Query Frame = 0 

Query: 1   LQVSCRRKEKERN-NFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTH 60
           LQ++CR+KEK R+ +  PYKVIEITPPPK+LGIRC P NLQCGE+V IEGQTYTISAVTH
Sbjct: 27  LQINCRKKEKGRDQSHYPYKVIEITPPPKSLGIRCLPHNLQCGENVMIEGQTYTISAVTH 86

Query: 61  RYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           RYQLRKGKYEP+E+RLDVLS  RY+LNLY +NLL+ S
Sbjct: 87  RYQLRKGKYEPSERRLDVLSAARYVLNLYFDNLLQNS 123

[Close]
BLAST of MS003115 vs. TAIR 10
Match: AT5G40500.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 49 Blast hits to 49 proteins in 22 species: Archae - 0; Bacteria - 7; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 157.5 bits (397), Expect = 5.3e-39
Identity = 74/97 (76.29%), Postives = 86/97 (88.66%), Query Frame = 0 

Query: 1   LQVSCRRKEKERN-NFDPYKVIEITPPPKNLGIRCFPPNLQCGESVTIEGQTYTISAVTH 60
           LQ++CR+KEK R+ +  PYKVIEITPPPK+LGIRC P NLQCGE+V IEGQTYTISAVTH
Sbjct: 18  LQINCRKKEKGRDQSHYPYKVIEITPPPKSLGIRCLPHNLQCGENVMIEGQTYTISAVTH 77

Query: 61  RYQLRKGKYEPTEKRLDVLSTGRYILNLYLENLLEKS 97
           RYQLRKGKYEP+E+RLDVLS  RY+LNLY +NLL+ S
Sbjct: 78  RYQLRKGKYEPSERRLDVLSAARYVLNLYFDNLLQNS 114

The following BLAST results are available for this feature:
BLAST of MS003115 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022133646.12.6e-48100.00uncharacterized protein LOC111006184 [Momordica charantia][more]
KAG6578668.14.2e-4695.83hypothetical protein SDJN03_23116, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_004142788.15.4e-4696.84uncharacterized protein LOC101221627 [Cucumis sativus] >KGN51358.1 hypothetical ... [more]
XP_008458808.15.4e-4696.84PREDICTED: uncharacterized protein LOC103498107 [Cucumis melo][more]
XP_022993339.11.6e-4594.79uncharacterized protein LOC111489380 [Cucurbita maxima] >XP_023551188.1 uncharac... [more]
BLAST of MS003115 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS003115 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1BVQ01.3e-48100.00uncharacterized protein LOC111006184 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
A0A0A0KP152.6e-4696.84Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G523040 PE=4 SV=1[more]
A0A1S3C8Q22.6e-4696.84uncharacterized protein LOC103498107 OS=Cucumis melo OX=3656 GN=LOC103498107 PE=... [more]
A0A6J1JZX47.7e-4694.79uncharacterized protein LOC111489380 OS=Cucurbita maxima OX=3661 GN=LOC111489380... [more]
A0A6J1FGM61.3e-4593.75uncharacterized protein LOC111445315 OS=Cucurbita moschata OX=3662 GN=LOC1114453... [more]
BLAST of MS003115 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G40500.15.3e-3976.29unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
AT5G40500.25.3e-3976.29unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36397OSJNBA0081L15.1 PROTEINcoord: 2..96

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS003115.1MS003115.1mRNA