MS002945 (gene) Bitter gourd (TR) v1

Overview


Name	MS002945
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	selenoprotein F
Location	scaffold595_1: 234154 .. 237455 (-)
RNA-Seq Expression	MS002945
Synteny	MS002945

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGGTTCTCACCGATGTAAAGAAGCCGGCTCCGGCGACGACGGCGGTGGCGGCGGCGGTGGCGATCATTTTTATCGCTTCAATTCCGCTGGCTTGGTCAAAGGAGCTACTCGGCCCGAGGGAATGTGAGGATCTAGGCTTCACAGGCCTTGCTCTCTGCTCTGATTGCAACACTTTAGCTGAATATATCAAAGATCAAGGTGACGCGTTTGATTCAGATTCACGCCCCCACGGTTTCTCTATACTCGATTCTTTCTCTGTTTTCGAATTTATGTTTTTGCGAAAATGCGCTATTTCGTCGGTTTCGATTCTGGATTTTTCCTTGATTTGGATTTTGGATTTCCAGATTACTTTGTTGTAGCCTTTTTTTGTGAAGTTTTGGTACTAATTTCAATATCTTAGATCGATTTCGTAGAGATTGTGGATAAGTTTCCTGATGTTCGTTTAGTTCCTATTTTGTTCGAAGATGCGGTAGCAATGAGTTCAGAGACCTATACCTAGTTATGTGATTGGCTGGAAATTTGTTAGGGAAGCAGAAGGTTCCTGAAATTCTGATATAATATTCATCTTTTTGTCAAAATCTTTGCAAAGAAACAAGGGCTAGAAAAAACCCCTTAATAATTGTAAGCGATAGATCTTCTTACTCTCCTGTAATTTGTAGATTATGTTATTCAAAAATCACGTATCATGTCTTTCTGATAAGTTGTGATTTGAATGCAATTTGTGATTGTTAGTGATAGCTTTTTCGGTGAATAAGTTTGTTCTCAATTCTAGCAATGACTTCTTGTCCACCTTCACTTACCATATATTCTGATTGATTAAAACGATGGAACGGAAAAAGAAACCAGTTTGATTGCAAAGCCAGCATAATGTTAAAGGGCAAAGATCTAAGGGGTGCAGAACTACTCTGAAAAATAATTTTTTTTTTTGTTTTATGGAACAAAAATTATGTAAAGACATCTATAGGTAACCATTTTTTAATAGTTGTTCTCTTGTTTCCTTTTAGTTTGTTTTAGTCTGCATTTATCTTTTCAGTTTAATTGATGATATTCTTTCTCTCTAGCACTGGCTATTCCAGTAACACTGGAATTTGTTTGAAATAGACCAAAATTTAAGGAAGAAAAGATTGGTAATATGCAAAACTCTGCAACTATGTTGTAGGTTTATGTAATGGTTTTGAAGTATGCATAAACTTTGTCTTGCAGAACTAATATCAGACTGTTTGAAGTGTTGCGCGGAGGATTCTGATGATGCCACGAGCAAGGTACAAATAATGATATAGATGTGCTGAATTCTGGAGGCTGAATTTCACCGACTAACTATTCCATTTGTGATTAATCTACCATGCTGCTAAACTGAATCTTGCTCATGCCAACTCTAAACGCATTAGTCTAATGTCTTATATAGTACAAACCATTTAGGCGTGTATGTAATTATCACAACTATGGTCCAAAGTTAGGTTTCAGTAAACAAGGAAAACTAATGTACCTTTACTTTAGAAAAGGTGACAGGACACATTTGGCATGGTGCTAGAACCTTGTTCAAGGATGTTTTTGCTAGGATTGACCCAAATTTCGATTCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGCATTTATCGATGCTTATCACAAACCTGTTGGACATCAATGGCGTGACATGATTGGCTCATTTGATGAGCAAGTGTTATCTATTAATTACACTTATTTTGTAAATTACAATGGTAATTTAAGATTCTTATGTCATAGAGTTTCTGAAGCTTCTTGATCGATCATCCTTGCTCATTATCAAACAATCACTTATTTGTACACCTCACGTGAGGCTGAGAATTTTCACCTGCTAAAATCCTTTTAGCTCCAATTAGCCCCATCCCCGCTGGAGGTTTCAGTGATAGGTTTCTATAGGAAATGAACAATTCTATTTGGTCAAATATCTAGCAACAAATTCAATCTTCCTTTAATTACAGTATTTTTTAACAAATTCGTGAAGGAAACTAGAGAATTATATAAGGAAGAAAATACAAAAAAGATAAACTCTCAATTTATTTGAGATACTTGAAACCTCCCCTATCTCGAGTCCAATTAATCCTAAATGCCCACAGTATTACCTGCTTTCATCTTCTCCCTTTTACTCTATTTATAACCAAGTCCTACTAATAAACTCCTTAGCTAGTTACTAATATGCCCTTACTATTCTAATAATGTTCCTAAATCCTAACTACTCCAATGACATTTCTAACAATTCCTAGTTCCTAAATTTTGTCCATCATGGTTGTGGCTAGAGAGAAGTGCCTGGTATATATGCAGAATGTAGAATTTTTCCAGTAGATTGAGTTTTGAGTTCCACCCTCCCCCATAATTCAGAACTCTGTTGTTGATTGTATTTCATAAATACTTGATTTTGTCTGTCTTTTCATTTATTTTGACAAAGGACAAAAGGCAATAATCTACATTCGCTAACTGCAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAACTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGATGAAAAGGATCAATTCCCTACTGTTAAGGTTCAATATATCTTCAACTCTCCACCGAAGCTGGTCTTGCTGGATGATGAGGGTCAACAGAAAGAAAGCATCAGGTAACCTTTTAAATGACCAAAAATTACTATACTACTCTTGAGATTGCAAATGTTGATCCTTTATTAAGATAAACAAAAGAATAGAAGTAGACGTTACAAAAACGAAAGCCTATACAAAAAAACCGAAACTAGTCTGAAGAAAGACTCTAATTGAATAGGAGATCAGGAGATAGTTACATAATACTTTAGAATCAGGCACCCGAAAGAGACGCCAAATCTACAATCAAGGACACTCGACGCCTCTAAAAATCCACCTATTTCAGACGTAAATGTTACCAAATGACTTATAACATTGTCTCGAAGAATGTTTGGATCCATGATGAATTAGACAGAATTCGTATAAGGCTAAATCTATGTTTTAGTCTCTAATATTTTGGTGTTTTTTCAATTTAGTCCCCTATTGTTTAAAAAAGTCTCAATCTAGTTTCTTACGTTCTAACGCTTTTCAATTTTGTCTCTCACTATCAGTAGATGTTAAAATTTGTTGATGATAAACTTATATGGCATAATACTTAGTGAATTGGTAAATATGGTATAGAGCGATTTTGAACAAATTTTCTTTTTTTTTTCTGGTTGCAGGATTGACAATTGGAAACGTGAACATATATTGCAGTTTCTGCAAGAGAAGGTTAAGCGTTCTTCAGCAATT

mRNA sequence

ATGCTGGTTCTCACCGATGTAAAGAAGCCGGCTCCGGCGACGACGGCGGTGGCGGCGGCGGTGGCGATCATTTTTATCGCTTCAATTCCGCTGGCTTGGTCAAAGGAGCTACTCGGCCCGAGGGAATGTGAGGATCTAGGCTTCACAGGCCTTGCTCTCTGCTCTGATTGCAACACTTTAGCTGAATATATCAAAGATCAAGAACTAATATCAGACTGTTTGAAGTGTTGCGCGGAGGATTCTGATGATGCCACGAGCAAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAACTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGATGAAAAGGATCAATTCCCTACTGTTAAGGTTCAATATATCTTCAACTCTCCACCGAAGCTGGTCTTGCTGGATGATGAGGGTCAACAGAAAGAAAGCATCAGGATTGACAATTGGAAACGTGAACATATATTGCAGTTTCTGCAAGAGAAGGTTAAGCGTTCTTCAGCAATT

Coding sequence (CDS)

ATGCTGGTTCTCACCGATGTAAAGAAGCCGGCTCCGGCGACGACGGCGGTGGCGGCGGCGGTGGCGATCATTTTTATCGCTTCAATTCCGCTGGCTTGGTCAAAGGAGCTACTCGGCCCGAGGGAATGTGAGGATCTAGGCTTCACAGGCCTTGCTCTCTGCTCTGATTGCAACACTTTAGCTGAATATATCAAAGATCAAGAACTAATATCAGACTGTTTGAAGTGTTGCGCGGAGGATTCTGATGATGCCACGAGCAAGATAACTTATTCTGGTGCTGTACTGGAGGTCTGCATGAGGAAACTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAAGATGAAAAGGATCAATTCCCTACTGTTAAGGTTCAATATATCTTCAACTCTCCACCGAAGCTGGTCTTGCTGGATGATGAGGGTCAACAGAAAGAAAGCATCAGGATTGACAATTGGAAACGTGAACATATATTGCAGTTTCTGCAAGAGAAGGTTAAGCGTTCTTCAGCAATT

Protein sequence

MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI

Homology

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BLAST of MS002945 vs. NCBI nr
Match: XP_022155407.1 (selenoprotein F [Momordica charantia])

HSP 1 Score: 341.3 bits (874), Expect = 4.9e-90
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60
           ML+LTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL
Sbjct: 1   MLILTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60

Query: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP
Sbjct: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120

Query: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 172
           TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
Sbjct: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 171

[Close]

BLAST of MS002945 vs. NCBI nr
Match: XP_038875398.1 (selenoprotein F [Benincasa hispida])

HSP 1 Score: 297.4 bits (760), Expect = 8.1e-77
Identity = 145/171 (84.80%), Postives = 155/171 (90.64%), Query Frame = 0


Query: 1   MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60
           M +L  V+ PA A T   AA  +IFIAS+PLAWSKE L  RECEDLGFTGLALCSDC+TL
Sbjct: 1   MQLLPGVRNPATAVTMAVAATVVIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           AEYIKDQEL++DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+EKDQFP
Sbjct: 61  AEYIKDQELVTDCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDQFP 120

Query: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 172
           +VKVQYIFNSPPKL+LLDDEGQ KESIRIDNWKREHILQFLQEKVKRSSAI
Sbjct: 121 SVKVQYIFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLQEKVKRSSAI 171

[Close]

BLAST of MS002945 vs. NCBI nr
Match: XP_023513576.1 (selenoprotein F-like [Cucurbita pepo subsp. pepo] >XP_023513577.1 selenoprotein F-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 293.5 bits (750), Expect = 1.2e-75
Identity = 144/171 (84.21%), Postives = 154/171 (90.06%), Query Frame = 0


Query: 1   MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60
           M V TDVK+PA      A A AIIFIAS+PLAWSKE L  RECEDLGFTGLALCSDC+TL
Sbjct: 1   MQVFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           AEYIKDQEL++DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+EKD+FP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 172
           +VK+QYIFNSPPKL LLDDEGQ KESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of MS002945 vs. NCBI nr
Match: XP_008460012.1 (PREDICTED: 15 kDa selenoprotein [Cucumis melo])

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 144/171 (84.21%), Postives = 154/171 (90.06%), Query Frame = 0


Query: 1   MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60
           M +L  V  PA A T   AA AIIFI+S+PLAWSKE L  RECEDLGFTGLALCSDC+TL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           AEYIKDQEL++DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 172
           +VKVQY FNSPPKL+LLDDEGQ KESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of MS002945 vs. NCBI nr
Match: KAG6592972.1 (Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 292.4 bits (747), Expect = 2.6e-75
Identity = 143/171 (83.63%), Postives = 154/171 (90.06%), Query Frame = 0


Query: 1   MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60
           M + TDVK+PA      A A AIIFIAS+PLAWSKE L  RECEDLGFTGLALCSDC+TL
Sbjct: 32  MQLFTDVKRPATVVGMAAWAAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 91

Query: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           AEYIKDQEL++DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+EKD+FP
Sbjct: 92  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 151

Query: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 172
           +VK+QYIFNSPPKL LLDDEGQ KESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 152 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 202

[Close]

BLAST of MS002945 vs. ExPASy Swiss-Prot
Match: O60613 (Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4)

HSP 1 Score: 92.0 bits (227), Expect = 6.8e-18
Identity = 47/126 (37.30%), Postives = 75/126 (59.52%), Query Frame = 0


Query: 43  CEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKL 102
           C +LGF+   LCS C+ L ++    +L  DC  CC E++   T K+ Y+GA+LEVC  KL
Sbjct: 41  CRELGFSSNLLCSSCDLLGQF-NLLQLDPDCRGCCQEEAQFETKKL-YAGAILEVCGXKL 100

Query: 103 VFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFL 162
             +P++  F+  +K + F  ++++Y+  S P L LLDD G   E + I  W  + + +FL
Sbjct: 101 GRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFL 160

Query: 163 QEKVKR 168
            EK++R
Sbjct: 161 SEKLER 164

[Close]

BLAST of MS002945 vs. ExPASy Swiss-Prot
Match: A1Z623 (Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2)

HSP 1 Score: 90.9 bits (224), Expect = 1.5e-17
Identity = 51/149 (34.23%), Postives = 83/149 (55.70%), Query Frame = 0


Query: 20  AVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAE 79
           A A+  +++    +S E      C +LGF+   LC  C+ L ++   Q L  DC  CC E
Sbjct: 20  ATALQMVSAFGAEFSSE-----SCRELGFSSNLLCGSCDLLGQFDLLQ-LDPDCRGCCQE 79

Query: 80  DSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVLLD 139
           ++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  ++++Y+  S P L LLD
Sbjct: 80  EAQFETKKL-YAGAILEVCGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLD 139

Query: 140 DEGQQKESIRIDNWKREHILQFLQEKVKR 168
           D G   E + I  W  + + +FL EK++R
Sbjct: 140 DNGNIAEELSILKWNTDSVEEFLSEKLQR 161

[Close]

BLAST of MS002945 vs. ExPASy Swiss-Prot
Match: Q802F3 (Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 2.6e-17
Identity = 47/131 (35.88%), Postives = 74/131 (56.49%), Query Frame = 0


Query: 38  LGPRECEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEV 97
           L    C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LEV
Sbjct: 24  LSSEACRELGFSSNLLCSSCELLGQFSLNQ-LDLPCRQCCQEEAQLENRKL-YPGAILEV 83

Query: 98  CMRKLVFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREH 157
           C  KL  +P++  F+  +K + F  ++++Y+  S P L LLDD G   E + I  W  + 
Sbjct: 84  CGXKLGRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDS 143

Query: 158 ILQFLQEKVKR 168
           + +FL EK++R
Sbjct: 144 VEEFLSEKLER 152

[Close]

BLAST of MS002945 vs. ExPASy Swiss-Prot
Match: Q9ERR7 (Selenoprotein F OS=Mus musculus OX=10090 GN=Selenof PE=1 SV=3)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-16
Identity = 46/126 (36.51%), Postives = 73/126 (57.94%), Query Frame = 0


Query: 43  CEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKL 102
           C +LGF+   LCS C+ L ++     L   C  CC E++   T K+ Y+GA+LEVC  KL
Sbjct: 38  CRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEEAQFETKKL-YAGAILEVCGXKL 97

Query: 103 VFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFL 162
             +P++  F+  +K + F  ++++Y+  S P L LLDD G   E + I  W  + + +FL
Sbjct: 98  GRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFL 157

Query: 163 QEKVKR 168
            EK++R
Sbjct: 158 SEKLER 161

[Close]

BLAST of MS002945 vs. ExPASy Swiss-Prot
Match: Q923V8 (Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3)

HSP 1 Score: 87.4 bits (215), Expect = 1.7e-16
Identity = 46/126 (36.51%), Postives = 73/126 (57.94%), Query Frame = 0


Query: 43  CEDLGFTGLALCSDCNTLAEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKL 102
           C +LGF+   LCS C+ L ++     L   C  CC E++   T K+ Y+GA+LEVC  KL
Sbjct: 38  CRELGFSSNLLCSSCDLLGQF-NLLPLDPVCRGCCQEEAQFETKKL-YAGAILEVCGXKL 97

Query: 103 VFYPEIVGFIEDEKDQ-FPTVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFL 162
             +P++  F+  +K + F  ++++Y+  S P L LLDD G   E + I  W  + + +FL
Sbjct: 98  GRFPQVQAFVRSDKPKLFRGLQIKYVRGSDPVLKLLDDNGNIAEELSILKWNTDSVEEFL 157

Query: 163 QEKVKR 168
            EK++R
Sbjct: 158 SEKLER 161

[Close]

BLAST of MS002945 vs. ExPASy TrEMBL
Match: A0A6J1DP91 (selenoprotein F OS=Momordica charantia OX=3673 GN=LOC111022555 PE=3 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-90
Identity = 170/171 (99.42%), Postives = 171/171 (100.00%), Query Frame = 0


Query: 1   MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60
           ML+LTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL
Sbjct: 1   MLILTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60

Query: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP
Sbjct: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120

Query: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 172
           TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI
Sbjct: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 171

[Close]

BLAST of MS002945 vs. ExPASy TrEMBL
Match: A0A1S3CC00 (15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 7.4e-76
Identity = 144/171 (84.21%), Postives = 154/171 (90.06%), Query Frame = 0


Query: 1   MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60
           M +L  V  PA A T   AA AIIFI+S+PLAWSKE L  RECEDLGFTGLALCSDC+TL
Sbjct: 1   MQLLPGVWNPATAVTVTLAAAAIIFISSMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           AEYIKDQEL++DCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE++KDQFP
Sbjct: 61  AEYIKDQELVADCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEDKDQFP 120

Query: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 172
           +VKVQY FNSPPKL+LLDDEGQ KESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of MS002945 vs. ExPASy TrEMBL
Match: A0A6J1KPJ2 (selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111497549 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.8e-75
Identity = 143/171 (83.63%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 1   MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60
           M +  DVKKPA      A   AIIFIAS+PLAWSKE L  RECEDLGFTGLALCSDC+TL
Sbjct: 1   MQLFADVKKPATVVAMAAWTAAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           AEYIKDQEL++DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+EKD+FP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 172
           +VKVQYIFNSPPKL LLDDEGQ KESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 121 SVKVQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of MS002945 vs. ExPASy TrEMBL
Match: A0A6J1HA08 (selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111460968 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.8e-75
Identity = 142/171 (83.04%), Postives = 153/171 (89.47%), Query Frame = 0


Query: 1   MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60
           M +  DVKKPA      A A AIIF+AS+PLAWSKE L  RECEDLGFTGLALCSDC+TL
Sbjct: 1   MQLFADVKKPATVVAMAAWAAAIIFMASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           AEYIKDQEL++DCLKCC EDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIE+EKD+FP
Sbjct: 61  AEYIKDQELVADCLKCCTEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEEEKDKFP 120

Query: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 172
           +VK+QYIFNSPPKL LLDDEGQ KESIRIDNWKREHILQFLQ+KVK SSAI
Sbjct: 121 SVKIQYIFNSPPKLTLLDDEGQHKESIRIDNWKREHILQFLQDKVKLSSAI 171

[Close]

BLAST of MS002945 vs. ExPASy TrEMBL
Match: A0A0A0KA30 (Sep15_SelM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.1e-74
Identity = 142/171 (83.04%), Postives = 151/171 (88.30%), Query Frame = 0


Query: 1   MLVLTDVKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTL 60
           M +L  V   A A T    A AIIFI+S+PL WSKE L  RECEDLGFTGLALCSDC+TL
Sbjct: 1   MQLLPGVWNSAIAVTVALTATAIIFISSMPLVWSKEQLSSRECEDLGFTGLALCSDCHTL 60

Query: 61  AEYIKDQELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFP 120
           AEYIKDQEL+SDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIED+KDQFP
Sbjct: 61  AEYIKDQELVSDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDDKDQFP 120

Query: 121 TVKVQYIFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSAI 172
           +VKVQY FNSPPKL+LLDD+GQ KESIRIDNWKREH LQFLQEKVKRSSAI
Sbjct: 121 SVKVQYTFNSPPKLILLDDKGQHKESIRIDNWKREHFLQFLQEKVKRSSAI 171

[Close]

BLAST of MS002945 vs. TAIR 10
Match: AT1G05720.1 (selenoprotein family protein )

HSP 1 Score: 238.0 bits (606), Expect = 5.5e-63
Identity = 111/164 (67.68%), Postives = 144/164 (87.80%), Query Frame = 0


Query: 7   VKKPAPATTAVAAAVAIIFIASIPLAWSKELLGPRECEDLGFTGLALCSDCNTLAEYIKD 66
           +K+   A   V +A+ I+ +AS   A  KE L  +ECEDLGF+GLALCSDC++L+EY+KD
Sbjct: 1   MKQREMAKMVVLSAMMILILASTISA--KEQLSTKECEDLGFSGLALCSDCHSLSEYVKD 60

Query: 67  QELISDCLKCCAEDSDDATSKITYSGAVLEVCMRKLVFYPEIVGFIEDEKDQFPTVKVQY 126
           QEL+SDCLKCCA+DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIE+EK++FP+VKVQY
Sbjct: 61  QELVSDCLKCCADDSEDSMSKVTYSGAILEVCMRKLVFYPEIVGFIEEEKEKFPSVKVQY 120

Query: 127 IFNSPPKLVLLDDEGQQKESIRIDNWKREHILQFLQEKVKRSSA 171
           IFNSPPKL++LD++G+ KESIRIDNWKREH+LQ+++EKVK ++A
Sbjct: 121 IFNSPPKLIMLDEDGEHKESIRIDNWKREHLLQYMREKVKPTAA 162

The following BLAST results are available for this feature:

BLAST of MS002945 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155407.1	4.9e-90	99.42	selenoprotein F [Momordica charantia]	[more]
XP_038875398.1	8.1e-77	84.80	selenoprotein F [Benincasa hispida]	[more]
XP_023513576.1	1.2e-75	84.21	selenoprotein F-like [Cucurbita pepo subsp. pepo] >XP_023513577.1 selenoprotein ...	[more]
XP_008460012.1	1.5e-75	84.21	PREDICTED: 15 kDa selenoprotein [Cucumis melo]	[more]
KAG6592972.1	2.6e-75	83.63	Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of MS002945 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O60613	6.8e-18	37.30	Selenoprotein F OS=Homo sapiens OX=9606 GN=SELENOF PE=1 SV=4	[more]
A1Z623	1.5e-17	34.23	Selenoprotein F OS=Sus scrofa OX=9823 GN=SELENOF PE=2 SV=2	[more]
Q802F3	2.6e-17	35.88	Selenoprotein F OS=Danio rerio OX=7955 GN=selenof PE=2 SV=2	[more]
Q9ERR7	1.7e-16	36.51	Selenoprotein F OS=Mus musculus OX=10090 GN=Selenof PE=1 SV=3	[more]
Q923V8	1.7e-16	36.51	Selenoprotein F OS=Rattus norvegicus OX=10116 GN=Selenof PE=1 SV=3	[more]

BLAST of MS002945 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DP91	2.4e-90	99.42	selenoprotein F OS=Momordica charantia OX=3673 GN=LOC111022555 PE=3 SV=1	[more]
A0A1S3CC00	7.4e-76	84.21	15 kDa selenoprotein OS=Cucumis melo OX=3656 GN=LOC103498956 PE=3 SV=1	[more]
A0A6J1KPJ2	2.8e-75	83.63	selenoprotein F-like OS=Cucurbita maxima OX=3661 GN=LOC111497549 PE=3 SV=1	[more]
A0A6J1HA08	2.8e-75	83.04	selenoprotein F-like OS=Cucurbita moschata OX=3662 GN=LOC111460968 PE=3 SV=1	[more]
A0A0A0KA30	4.1e-74	83.04	Sep15_SelM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G087180 ...	[more]

BLAST of MS002945 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05720.1	5.5e-63	67.68	selenoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014912	Selenoprotein F/M domain	PFAM	PF08806	Sep15_SelM	coord: 93..165 e-value: 1.4E-28 score: 98.9
IPR038219	Selenoprotein F/M, thioredoxin-like domain superfamily	GENE3D	3.40.30.50		coord: 92..165 e-value: 1.2E-26 score: 94.7
None	No IPR available	PANTHER	PTHR13077:SF8	BNAANNG25340D PROTEIN	coord: 17..169
IPR039992	Selenoprotein F/M	PANTHER	PTHR13077	SELENOPROTEIN F	coord: 17..169
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 76..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002945.1	MS002945.1	mRNA