MS002943 (gene) Bitter gourd (TR) v1

Overview


Name	MS002943
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Pentatricopeptide repeat-containing family protein
Location	scaffold595_1: 213750 .. 214009 (-)
RNA-Seq Expression	MS002943
Synteny	MS002943

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCCTCTTGGCCAAAAAGGTCGATATAAGCTTGCTCTGCATATCTTTCAACCAATCGACAAACCGGATTGCTATACTAACAAGCAAAGTTATTCTATTTTAGTGAGGCTATTCATTAGTTGAATCCATGTCCACGAATTTCTCAGAGGGGTAGTGGTGCGGGCATTTTGTCAAACACCCTTTTGGATGGTCTATATGTTAATAGAAAGATCGAGCAGGTTCTGGAAATACTTGGTCAGATCTATATGAATGGACTAAAG

mRNA sequence

GAGCCTCTTGGCCAAAAAGGTCGATATAAGCTTGCTCTGCATATCTTTCAACCAATCGACAAACCGGATTGCTATACTAACAAGCAAAGTTATTCTATTTTAGTGAGGCTATTCATTTTGAATCCATGTCCACGAATTTCTCAGAGGGGTAGTGGTGCGGGCATTTTGTCAAACACCCTTTTGGATGGTCTATATGTTAATAGAAAGATCGAGCAGGTTCTGGAAATACTTGGTCAGATCTATATGAATGGACTAAAG

Coding sequence (CDS)

GAGCCTCTTGGCCAAAAAGGTCGATATAAGCTTGCTCTGCATATCTTTCAACCAATCGACAAACCGGATTGCTATACTAACAAGCAAAGTTATTCTATTTTAGTGAGGCTATTCATTTTGAATCCATGTCCACGAATTTCTCAGAGGGGTAGTGGTGCGGGCATTTTGTCAAACACCCTTTTGGATGGTCTATATGTTAATAGAAAGATCGAGCAGGTTCTGGAAATACTTGGTCAGATCTATATGAATGGACTAAAG

Protein sequence

EPLGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFILNPCPRISQRGSGAGILSNTLLDGLYVNRKIEQVLEILGQIYMNGLK

Homology

[Close]

BLAST of MS002943 vs. NCBI nr
Match: KAG6786927.1 (hypothetical protein POTOM_008547 [Populus tomentosa])

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-08
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG  I +  TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MS002943 vs. NCBI nr
Match: KAF9861711.1 (hypothetical protein H0E87_012824 [Populus deltoides])

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-08
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG  I +  TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MS002943 vs. NCBI nr
Match: XP_022157802.1 (pentatricopeptide repeat-containing protein At1g05600 [Momordica charantia])

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-08
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 1   EPLGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVR------------LFILNPCPRISQ 60
           + L Q+ + +LALHIFQ +D   CY N+ SY IL++              + +   RISQ
Sbjct: 159 QSLCQRAQSELALHIFQEMDYQGCYPNRLSYLILMKGLCQDGRLNEAVHLLYSMFWRISQ 218

Query: 61  RGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           RGSG  I +  TLL  L  N ++EQ +EILG+I   GLK
Sbjct: 219 RGSGGDIVIYRTLLYALCANGEVEQAVEILGKILRKGLK 257

[Close]

BLAST of MS002943 vs. NCBI nr
Match: KAF9861710.1 (hypothetical protein H0E87_012824 [Populus deltoides])

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-08
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG  I +  TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MS002943 vs. NCBI nr
Match: XP_011025376.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Populus euphratica])

HSP 1 Score: 67.8 bits (164), Expect = 5.3e-08
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG  I +  TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MS002943 vs. ExPASy Swiss-Prot
Match: Q9SYK1 (Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX=3702 GN=At1g05600 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 1.8e-06
Identity = 35/97 (36.08%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRG 62
           L Q  R  LA  +FQ ++   CY ++ SY IL++ F L            +   RISQ+G
Sbjct: 162 LCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKG 221

Query: 63  SGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG  I +   LLD L    +++  +EILG+I   GLK
Sbjct: 222 SGEDIVVYRILLDALCDAGEVDDAIEILGKILRKGLK 258

[Close]

BLAST of MS002943 vs. ExPASy TrEMBL
Match: A0A6J1DVG7 (pentatricopeptide repeat-containing protein At1g05600 OS=Momordica charantia OX=3673 GN=LOC111024421 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 1   EPLGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVR------------LFILNPCPRISQ 60
           + L Q+ + +LALHIFQ +D   CY N+ SY IL++              + +   RISQ
Sbjct: 159 QSLCQRAQSELALHIFQEMDYQGCYPNRLSYLILMKGLCQDGRLNEAVHLLYSMFWRISQ 218

Query: 61  RGSGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           RGSG  I +  TLL  L  N ++EQ +EILG+I   GLK
Sbjct: 219 RGSGGDIVIYRTLLYALCANGEVEQAVEILGKILRKGLK 257

[Close]

BLAST of MS002943 vs. ExPASy TrEMBL
Match: A0A4U5PX12 (Pentatricopeptide repeat-containing family protein OS=Populus alba OX=43335 GN=D5086_0000167350 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG  I +  TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MS002943 vs. ExPASy TrEMBL
Match: A0A5N5NNS3 (Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_003058 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG  I +  TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MS002943 vs. ExPASy TrEMBL
Match: A0A6N2L9A7 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS195456 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 43/97 (44.33%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCGDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG  I +  TLLD L  N ++E+ LEILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEALEILGKILRKGLK 257

[Close]

BLAST of MS002943 vs. ExPASy TrEMBL
Match: A0A2K2BKH4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G179300 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.4e-08
Identity = 42/97 (43.30%), Postives = 54/97 (55.67%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFI----LNPCP--------RISQRG 62
           L Q+ R  LAL +FQ +D   CY N+ SY IL+R       LN           RISQ+G
Sbjct: 161 LCQRNRSDLALQVFQEMDYQGCYPNRDSYRILMRGLCEDGRLNEATHLLYSMFWRISQKG 220

Query: 63  SGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG  I +  TLLD L  N ++E+ +EILG+I   GLK
Sbjct: 221 SGEDIVVYRTLLDALCDNGQVEEAMEILGKILRKGLK 257

[Close]

BLAST of MS002943 vs. TAIR 10
Match: AT1G05600.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 35/97 (36.08%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRG 62
           L Q  R  LA  +FQ ++   CY ++ SY IL++ F L            +   RISQ+G
Sbjct: 162 LCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKG 221

Query: 63  SGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG  I +   LLD L    +++  +EILG+I   GLK
Sbjct: 222 SGEDIVVYRILLDALCDAGEVDDAIEILGKILRKGLK 258

[Close]

BLAST of MS002943 vs. TAIR 10
Match: AT1G05600.2 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 35/97 (36.08%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 3   LGQKGRYKLALHIFQPIDKPDCYTNKQSYSILVRLFIL------------NPCPRISQRG 62
           L Q  R  LA  +FQ ++   CY ++ SY IL++ F L            +   RISQ+G
Sbjct: 162 LCQVNRSDLASQVFQEMNYQGCYPDRDSYRILMKGFCLEGKLEEATHLLYSMFWRISQKG 221

Query: 63  SGAGI-LSNTLLDGLYVNRKIEQVLEILGQIYMNGLK 87
           SG  I +   LLD L    +++  +EILG+I   GLK
Sbjct: 222 SGEDIVVYRILLDALCDAGEVDDAIEILGKILRKGLK 258

The following BLAST results are available for this feature:

BLAST of MS002943 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6786927.1	5.3e-08	44.33	hypothetical protein POTOM_008547 [Populus tomentosa]	[more]
KAF9861711.1	5.3e-08	44.33	hypothetical protein H0E87_012824 [Populus deltoides]	[more]
XP_022157802.1	5.3e-08	41.41	pentatricopeptide repeat-containing protein At1g05600 [Momordica charantia]	[more]
KAF9861710.1	5.3e-08	44.33	hypothetical protein H0E87_012824 [Populus deltoides]	[more]
XP_011025376.1	5.3e-08	44.33	PREDICTED: pentatricopeptide repeat-containing protein At1g05600 [Populus euphra...	[more]

BLAST of MS002943 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SYK1	1.8e-06	36.08	Pentatricopeptide repeat-containing protein At1g05600 OS=Arabidopsis thaliana OX...	[more]

BLAST of MS002943 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVG7	2.6e-08	41.41	pentatricopeptide repeat-containing protein At1g05600 OS=Momordica charantia OX=...	[more]
A0A4U5PX12	2.6e-08	44.33	Pentatricopeptide repeat-containing family protein OS=Populus alba OX=43335 GN=D...	[more]
A0A5N5NNS3	2.6e-08	44.33	Uncharacterized protein OS=Salix brachista OX=2182728 GN=DKX38_003058 PE=4 SV=1	[more]
A0A6N2L9A7	2.6e-08	44.33	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS195456 PE=4 SV=...	[more]
A0A2K2BKH4	4.4e-08	43.30	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G179300 PE=4 ...	[more]

BLAST of MS002943 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05600.1	1.3e-07	36.08	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G05600.2	1.3e-07	36.08	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002943.1	MS002943.1	mRNA