MS002872 (gene) Bitter gourd (TR) v1

Overview
NameMS002872
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionSodium/hydrogen exchanger
Locationscaffold359: 371380 .. 371535 (+)
RNA-Seq ExpressionMS002872
SyntenyMS002872
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTCTCGTCACTTTCTTTGAAATATTTTCAGGTGTTACTTATTGGAGGTTCAACTGGTACTATGCTAGAAGCTTTACAAGTTGTAGGTGATGGTGATGACCATGAATACTCTTTGACTGAAGTAAGTTGTATGAATTTTGCATTTTTGACTTTT

mRNA sequence

TTTTTCTCGTCACTTTCTTTGAAATATTTTCAGGTGTTACTTATTGGAGGTTCAACTGGTACTATGCTAGAAGCTTTACAAGTTGTAGGTGATGGTGATGACCATGAATACTCTTTGACTGAAGTAAGTTGTATGAATTTTGCATTTTTGACTTTT

Coding sequence (CDS)

TTTTTCTCGTCACTTTCTTTGAAATATTTTCAGGTGTTACTTATTGGAGGTTCAACTGGTACTATGCTAGAAGCTTTACAAGTTGTAGGTGATGGTGATGACCATGAATACTCTTTGACTGAAGTAAGTTGTATGAATTTTGCATTTTTGACTTTT

Protein sequence

FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYSLTEVSCMNFAFLTF
Homology
[Close]
BLAST of MS002872 vs. NCBI nr
Match: XP_008465529.1 (PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis melo])

HSP 1 Score: 71.6 bits (174), Expect = 2.2e-09
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYSLTEVSCMNFAFL 51
           F ++ ++    VLLIGGSTGTMLEALQVVGD DDHEYSLTEVS MN  FL
Sbjct: 156 FTATTAIVVLTVLLIGGSTGTMLEALQVVGDSDDHEYSLTEVSFMNSVFL 205

[Close]
BLAST of MS002872 vs. NCBI nr
Match: XP_022142428.1 (sodium/hydrogen exchanger 6-like isoform X1 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 4.6e-07
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYSLTE 42
           F ++ ++    VLLIGGSTGTMLEALQVVGDGDDHEYSLTE
Sbjct: 419 FTATTAIVVLTVLLIGGSTGTMLEALQVVGDGDDHEYSLTE 459

[Close]
BLAST of MS002872 vs. NCBI nr
Match: XP_022142429.1 (sodium/hydrogen exchanger 6-like isoform X2 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 4.6e-07
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYSLTE 42
           F ++ ++    VLLIGGSTGTMLEALQVVGDGDDHEYSLTE
Sbjct: 341 FTATTAIVVLTVLLIGGSTGTMLEALQVVGDGDDHEYSLTE 381

[Close]
BLAST of MS002872 vs. NCBI nr
Match: XP_022973131.1 (sodium/hydrogen exchanger 6-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-06
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYSLTEVSCMNFAFL 51
           F ++ ++    VLLIGGSTGTMLEALQVVGD DDHEYSLTE S ++  ++
Sbjct: 419 FTATTAIVVLTVLLIGGSTGTMLEALQVVGDNDDHEYSLTENSDVSNGYI 468

[Close]
BLAST of MS002872 vs. NCBI nr
Match: XP_022927363.1 (sodium/hydrogen exchanger 6-like isoform X1 [Cucurbita moschata] >XP_023519669.1 sodium/hydrogen exchanger 6-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG6583674.1 Sodium/hydrogen exchanger 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 62.8 bits (151), Expect = 1.0e-06
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYSLTEVSCMNFAFL 51
           F ++ ++    VLLIGGSTGTMLEALQVVGD DDHEYSLTE S ++  ++
Sbjct: 419 FTATTAIVVLTVLLIGGSTGTMLEALQVVGDSDDHEYSLTENSDVSNGYI 468

[Close]
BLAST of MS002872 vs. ExPASy TrEMBL
Match: A0A0A0LTC6 (Sodium/hydrogen exchanger OS=Cucumis sativus OX=3659 GN=Csa_1G178240 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYSLTEVSCMNFAFL 51
           F ++ ++    VLLIGGSTGTMLEALQVVGD DDHEYSLTEVS MN  FL
Sbjct: 473 FTATTAIVVLTVLLIGGSTGTMLEALQVVGDSDDHEYSLTEVSFMNSVFL 522

[Close]
BLAST of MS002872 vs. ExPASy TrEMBL
Match: A0A1S3CPG9 (sodium/hydrogen exchanger 6-like OS=Cucumis melo OX=3656 GN=LOC103503154 PE=3 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-09
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYSLTEVSCMNFAFL 51
           F ++ ++    VLLIGGSTGTMLEALQVVGD DDHEYSLTEVS MN  FL
Sbjct: 156 FTATTAIVVLTVLLIGGSTGTMLEALQVVGDSDDHEYSLTEVSFMNSVFL 205

[Close]
BLAST of MS002872 vs. ExPASy TrEMBL
Match: A0A6J1CLI4 (Sodium/hydrogen exchanger OS=Momordica charantia OX=3673 GN=LOC111012565 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYSLTE 42
           F ++ ++    VLLIGGSTGTMLEALQVVGDGDDHEYSLTE
Sbjct: 341 FTATTAIVVLTVLLIGGSTGTMLEALQVVGDGDDHEYSLTE 381

[Close]
BLAST of MS002872 vs. ExPASy TrEMBL
Match: A0A6J1CN83 (Sodium/hydrogen exchanger OS=Momordica charantia OX=3673 GN=LOC111012565 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.2e-07
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYSLTE 42
           F ++ ++    VLLIGGSTGTMLEALQVVGDGDDHEYSLTE
Sbjct: 419 FTATTAIVVLTVLLIGGSTGTMLEALQVVGDGDDHEYSLTE 459

[Close]
BLAST of MS002872 vs. ExPASy TrEMBL
Match: A0A6J1IAK5 (Sodium/hydrogen exchanger OS=Cucurbita maxima OX=3661 GN=LOC111471648 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-07
Identity = 31/50 (62.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYSLTEVSCMNFAFL 51
           F ++ ++    VLLIGGSTGTMLEALQVVGD DDHEYSLTE S ++  ++
Sbjct: 419 FTATTAIVVLTVLLIGGSTGTMLEALQVVGDNDDHEYSLTENSDVSNGYI 468

[Close]
BLAST of MS002872 vs. TAIR 10
Match: AT1G79610.1 (Na+/H+ antiporter 6 )

HSP 1 Score: 42.7 bits (99), Expect = 1.0e-04
Identity = 21/34 (61.76%), Postives = 26/34 (76.47%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDD 35
           F ++ ++    VLLIGGSTGTMLEAL+VVGD  D
Sbjct: 414 FTATTAIVVLTVLLIGGSTGTMLEALEVVGDSHD 447

[Close]
BLAST of MS002872 vs. TAIR 10
Match: AT1G54370.1 (sodium hydrogen exchanger 5 )

HSP 1 Score: 39.7 bits (91), Expect = 8.7e-04
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 0 

Query: 1   FFSSLSLKYFQVLLIGGSTGTMLEALQVVGDGDDHEYS 39
           F ++ ++    VLLIGGSTG MLEAL+VVGD  D   S
Sbjct: 414 FTATTTIVVVTVLLIGGSTGKMLEALEVVGDDLDDSMS 451

The following BLAST results are available for this feature:
BLAST of MS002872 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008465529.12.2e-0972.00PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis melo][more]
XP_022142428.14.6e-0775.61sodium/hydrogen exchanger 6-like isoform X1 [Momordica charantia][more]
XP_022142429.14.6e-0775.61sodium/hydrogen exchanger 6-like isoform X2 [Momordica charantia][more]
XP_022973131.11.0e-0662.00sodium/hydrogen exchanger 6-like isoform X2 [Cucurbita maxima][more]
XP_022927363.11.0e-0662.00sodium/hydrogen exchanger 6-like isoform X1 [Cucurbita moschata] >XP_023519669.1... [more]
BLAST of MS002872 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MS002872 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LTC61.1e-0972.00Sodium/hydrogen exchanger OS=Cucumis sativus OX=3659 GN=Csa_1G178240 PE=3 SV=1[more]
A0A1S3CPG91.1e-0972.00sodium/hydrogen exchanger 6-like OS=Cucumis melo OX=3656 GN=LOC103503154 PE=3 SV... [more]
A0A6J1CLI42.2e-0775.61Sodium/hydrogen exchanger OS=Momordica charantia OX=3673 GN=LOC111012565 PE=3 SV... [more]
A0A6J1CN832.2e-0775.61Sodium/hydrogen exchanger OS=Momordica charantia OX=3673 GN=LOC111012565 PE=3 SV... [more]
A0A6J1IAK55.0e-0762.00Sodium/hydrogen exchanger OS=Cucurbita maxima OX=3661 GN=LOC111471648 PE=3 SV=1[more]
BLAST of MS002872 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G79610.11.0e-0461.76Na+/H+ antiporter 6 [more]
AT1G54370.18.7e-0455.26sodium hydrogen exchanger 5 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002872.1MS002872.1mRNA