MS002826 (gene) Bitter gourd (TR) v1

Overview


Name	MS002826
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	40S ribosomal protein S25
Location	scaffold359: 32936 .. 34817 (+)
RNA-Seq Expression	MS002826
Synteny	MS002826

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGCACCGAAGAAGGATAAGGCTCCTCCTCCGTCATCCAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGGTAATTCTTTATGTGATGACTGTTTTGTTTTGAAAGTTTAGTGATTATGGGTCTAGTGAGCATTCAGGTACATTTTTCATGCCTGTTGCTAGTGTTAGTTTGTTTGAGGAATTTTTTGTAAATTTTATCATTGAGTGTTGTATTTACAATTCTTATTACTGTTTGTTGTTCAGAAATGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAATAACTTGGTATTGTTTGATCAGGGAACCTACGACAAGCTTCTTTCAGAAGCTCCAAAGTACAAGCTTATCACTCCTTCCATCCTATCCGACAGATTGAGGGTATGGTTTGCTCAATCCCATTTTGCTTATATTTGTCCCATGTCAAAATTCTGTCTTTTTTATTGTGGAATATGGACCATGTTTCTTTATGTTTGTTTGAAGTCTGCACGCCTCAAACTACTCCCTTTGATACTTTGAAAATGGATAGGAGAAAGAAGCTGTAGGTGGGTGATTATAGGTCGAGCCTCTTTCTCTGCTTTTTACGAACATCATTTCATGATTGTTACATAATTTGACCTCCATGTCAAAGACTGCCCGTATTTAAGAAATGTTCTAGGCCAACCTTCATCTGTTAATCTTTATTTAATCGAGCATGTTATTGTGTTTTTACATCTTACGGTTCCAAAACACATGATCTGATTCATTCTATAGTTTTTTTTTTTTTTTTTTTGACGAGATACCAACTTTCATTGAATAAGAGAAAATTGCATTACATAGGTTTATGCATTCAGAAACTACCTCCGTAGCAAAAGATAACCTTCTTTCTTATATTTTTCCTACTTTATTACGAATATAGCATTTCATTTGAGATGCCACATAAAAGTAAATATACATCCATTGGTTTGAGTCGTTTGACACGTTTACCAAAGTACCTCCTCTAGTTTGATGTCATGTCAGGAAGGAGGTTGTTAGGTATCCCAAATACAAGAACCTAACAAGAACACTATATTGCAATACAAAATAGGGATTACAATACCGATAGCCTTTCGAGAGGGCTATCTCTCTCCCAAGAACTCTCTCAAGTTTCTCACACAAAACCATTCTCCAAGATGTCTTTTTCCTTCCCCTACTACCCTTATTTATAACAACTCACCATAATACTCTCCCACTAATATACTAATAATATTCTCAAACTGCACTTACTAGAACTCTCACAGAGGTTTATTTTTAGGAGTGAGGTTTATTTTCAGGAGTGATTAGAATGAGTGATTTTGAAAACAAAGATTTAAGTATAATTGATTTTCTAAAATTACCACGCAAGTGATACCTTAAAAATCAATTTAAAGTGATTTTAAGCTTTCTTAAAATCAAATTTTTAATTGGCCAAACATGATCAATAAGAAGGGAAGTGATTTTGACAATAACAAAAGTGACTTTGCAATGCCAAAATCACTCCCAAACACACCCTTTGCACCCTATTAATTCCTTGGATTTGAAATAATCACTTTTAGCCCATTGAGATATAGTTACGTTTGCATTAACCATAAGATAAAGTATCTAATGTCCTCAATATGTCATTATTTACCAGAAATAAAATTTTCTTTGGTTCTCATGTCATTCCTGTTATCCAACCAAATTAATATTGGTTTTGGATTGATTGTTATCAAGTTATGGCAAACTGATAAAAGTCTTTCGTTGTTTTGTTGTTCCTTACAATTCATCAGATCAATGGATCATTGGCACGTCGGGCAATTAAGGATTTGATGGCGAGAGGTTCAATTAGGCTCATATCGGCTCATTCTAGCCAGCAGATATACACTAGAGCCACAAATACA

mRNA sequence

CAGGCACCGAAGAAGGATAAGGCTCCTCCTCCGTCATCCAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAATAACTTGGTATTGTTTGATCAGGGAACCTACGACAAGCTTCTTTCAGAAGCTCCAAAGTACAAGCTTATCACTCCTTCCATCCTATCCGACAGATTGAGGATCAATGGATCATTGGCACGTCGGGCAATTAAGGATTTGATGGCGAGAGGTTCAATTAGGCTCATATCGGCTCATTCTAGCCAGCAGATATACACTAGAGCCACAAATACA

Coding sequence (CDS)

CAGGCACCGAAGAAGGATAAGGCTCCTCCTCCGTCATCCAAGCCTGCTAAATCTGGCGGAGGAAAGCAGAAGAAGAAGAAATGGAGCAAGGGAAAGCAGAAGGAGAAGGTGAATAACTTGGTATTGTTTGATCAGGGAACCTACGACAAGCTTCTTTCAGAAGCTCCAAAGTACAAGCTTATCACTCCTTCCATCCTATCCGACAGATTGAGGATCAATGGATCATTGGCACGTCGGGCAATTAAGGATTTGATGGCGAGAGGTTCAATTAGGCTCATATCGGCTCATTCTAGCCAGCAGATATACACTAGAGCCACAAATACA

Protein sequence

QAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLITPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT

Homology

[Close]

BLAST of MS002826 vs. NCBI nr
Match: XP_022142384.1 (40S ribosomal protein S25-2 [Momordica charantia])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI
Sbjct: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. NCBI nr
Match: XP_008442240.1 (PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo])

HSP 1 Score: 196.8 bits (499), Expect = 9.5e-47
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSEAPK+KLI
Sbjct: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. NCBI nr
Match: XP_008456601.1 (PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_022134525.1 40S ribosomal protein S25-2-like [Momordica charantia] >TYK11764.1 40S ribosomal protein S25-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 195.7 bits (496), Expect = 2.1e-46
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKL+
Sbjct: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLV 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. NCBI nr
Match: XP_008391134.1 (40S ribosomal protein S25-like [Malus domestica] >XP_028955746.1 40S ribosomal protein S25-like [Malus domestica] >KAB2619834.1 40S ribosomal protein S25-like [Pyrus ussuriensis x Pyrus communis] >RXH83406.1 hypothetical protein DVH24_005659 [Malus domestica] >RXI04825.1 hypothetical protein DVH24_039099 [Malus domestica] >RXI09942.1 hypothetical protein DVH24_018971 [Malus domestica])

HSP 1 Score: 194.5 bits (493), Expect = 4.7e-46
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKLI
Sbjct: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDRLRINGSLARRAIKDLMARGSIRLI+AH+SQQIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLIAAHASQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. NCBI nr
Match: XP_004140903.1 (40S ribosomal protein S25-2 [Cucumis sativus] >KGN46039.1 hypothetical protein Csa_005769 [Cucumis sativus])

HSP 1 Score: 194.5 bits (493), Expect = 4.7e-46
Identity = 101/107 (94.39%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKL+
Sbjct: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLV 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDR+R+NGSLARRAIKDLMARGSIR+ISAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRMRVNGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. ExPASy Swiss-Prot
Match: Q9SIK2 (40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.2e-46
Identity = 96/107 (89.72%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLL+EAPK+KLI
Sbjct: 2   APKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. ExPASy Swiss-Prot
Match: Q8GYL5 (40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2)

HSP 1 Score: 183.0 bits (463), Expect = 1.9e-45
Identity = 95/106 (89.62%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQ TYDKLLSEAPK+KLI
Sbjct: 2   APKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN 108
           TPSILSDRLRINGSLARRAI++LMA+G+IR++SAHSSQQIYTRAT+
Sbjct: 62  TPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of MS002826 vs. ExPASy Swiss-Prot
Match: P46301 (40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 1.9e-45
Identity = 95/107 (88.79%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKK +APPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFD+ TYDKLLSEAPKYKLI
Sbjct: 2   APKKAQAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDKSTYDKLLSEAPKYKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPS+LSDRLRI+GSLAR+AI+DLMARGSIR++SAH+SQQIYTRATNT
Sbjct: 62  TPSVLSDRLRISGSLARKAIRDLMARGSIRMVSAHASQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. ExPASy Swiss-Prot
Match: Q9T029 (40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.4e-45
Identity = 94/107 (87.85%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQ TYDKLL+EAPK+KLI
Sbjct: 2   APKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQIYTRATNT
Sbjct: 62  TPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. ExPASy Swiss-Prot
Match: Q9SIW5 (40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3)

HSP 1 Score: 175.6 bits (444), Expect = 3.0e-43
Identity = 91/105 (86.67%), Postives = 100/105 (95.24%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQ TYDKL+SEAPK+KLI
Sbjct: 2   APKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLMSEAPKFKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRAT 107
           TPSILSDRLRINGSLAR+AI+DLM +G+IR++S HSSQQI TRAT
Sbjct: 62  TPSILSDRLRINGSLARKAIRDLMVKGTIRMVSTHSSQQINTRAT 106

[Close]

BLAST of MS002826 vs. ExPASy TrEMBL
Match: A0A6J1CLE7 (40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111012531 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.2e-48
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI
Sbjct: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. ExPASy TrEMBL
Match: A0A1S3B608 (40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103486154 PE=3 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 4.6e-47
Identity = 105/107 (98.13%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSEAPK+KLI
Sbjct: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEAPKFKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. ExPASy TrEMBL
Match: A0A5D3CKR9 (40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00850 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKL+
Sbjct: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLV 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. ExPASy TrEMBL
Match: A0A6J1BYI5 (40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111006746 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKL+
Sbjct: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLV 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. ExPASy TrEMBL
Match: A0A1S3C4W3 (40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103496510 PE=3 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 103/107 (96.26%), Postives = 106/107 (99.07%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLLSE PKYKL+
Sbjct: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLSEVPKYKLV 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDRLRINGSLARRAIKDLMARGSIR+ISAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRMISAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. TAIR 10
Match: AT2G21580.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 186.0 bits (471), Expect = 1.6e-47
Identity = 96/107 (89.72%), Postives = 105/107 (98.13%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQGTYDKLL+EAPK+KLI
Sbjct: 2   APKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. TAIR 10
Match: AT4G34555.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 183.0 bits (463), Expect = 1.3e-46
Identity = 95/106 (89.62%), Postives = 104/106 (98.11%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQ TYDKLLSEAPK+KLI
Sbjct: 2   APKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKFKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATN 108
           TPSILSDRLRINGSLARRAI++LMA+G+IR++SAHSSQQIYTRAT+
Sbjct: 62  TPSILSDRLRINGSLARRAIRELMAKGTIRMVSAHSSQQIYTRATH 107

[Close]

BLAST of MS002826 vs. TAIR 10
Match: AT4G39200.1 (Ribosomal protein S25 family protein )

HSP 1 Score: 182.6 bits (462), Expect = 1.7e-46
Identity = 94/107 (87.85%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDK PPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN+VLFDQ TYDKLL+EAPK+KLI
Sbjct: 2   APKKDKVPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQIYTRATNT
Sbjct: 62  TPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 108

[Close]

BLAST of MS002826 vs. TAIR 10
Match: AT2G21580.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-45
Identity = 95/107 (88.79%), Postives = 104/107 (97.20%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNN+VLFDQGTYDKLL+EAPK+KLI
Sbjct: 2   APKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQGTYDKLLTEAPKFKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDR+RINGSLARRAI++LMA+G IR++SAHSSQQIYTRATNT
Sbjct: 62  TPSILSDRMRINGSLARRAIRELMAKGLIRMVSAHSSQQIYTRATNT 107

[Close]

BLAST of MS002826 vs. TAIR 10
Match: AT4G39200.2 (Ribosomal protein S25 family protein )

HSP 1 Score: 176.4 bits (446), Expect = 1.2e-44
Identity = 93/107 (86.92%), Postives = 103/107 (96.26%), Query Frame = 0


Query: 2   APKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNLVLFDQGTYDKLLSEAPKYKLI 61
           APKKDK PPPSSKPAKSGGGKQ KKKWSKGKQKEKVNN+VLFDQ TYDKLL+EAPK+KLI
Sbjct: 2   APKKDKVPPPSSKPAKSGGGKQ-KKKWSKGKQKEKVNNMVLFDQATYDKLLTEAPKFKLI 61

Query: 62  TPSILSDRLRINGSLARRAIKDLMARGSIRLISAHSSQQIYTRATNT 109
           TPSILSDR+RINGSLARRAI++LMA+G IR+++AHSSQQIYTRATNT
Sbjct: 62  TPSILSDRMRINGSLARRAIRELMAKGVIRMVAAHSSQQIYTRATNT 107

The following BLAST results are available for this feature:

BLAST of MS002826 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022142384.1	1.9e-47	100.00	40S ribosomal protein S25-2 [Momordica charantia]	[more]
XP_008442240.1	9.5e-47	98.13	PREDICTED: 40S ribosomal protein S25-2 [Cucumis melo]	[more]
XP_008456601.1	2.1e-46	96.26	PREDICTED: 40S ribosomal protein S25-2-like [Cucumis melo] >XP_022134525.1 40S r...	[more]
XP_008391134.1	4.7e-46	96.26	40S ribosomal protein S25-like [Malus domestica] >XP_028955746.1 40S ribosomal p...	[more]
XP_004140903.1	4.7e-46	94.39	40S ribosomal protein S25-2 [Cucumis sativus] >KGN46039.1 hypothetical protein C...	[more]

BLAST of MS002826 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIK2	2.2e-46	89.72	40S ribosomal protein S25-2 OS=Arabidopsis thaliana OX=3702 GN=RPS25B PE=3 SV=1	[more]
Q8GYL5	1.9e-45	89.62	40S ribosomal protein S25-3 OS=Arabidopsis thaliana OX=3702 GN=RPS25D PE=3 SV=2	[more]
P46301	1.9e-45	88.79	40S ribosomal protein S25 OS=Solanum lycopersicum OX=4081 GN=RPS25 PE=3 SV=1	[more]
Q9T029	2.4e-45	87.85	40S ribosomal protein S25-4 OS=Arabidopsis thaliana OX=3702 GN=RPS25E PE=3 SV=1	[more]
Q9SIW5	3.0e-43	86.67	40S ribosomal protein S25-1 OS=Arabidopsis thaliana OX=3702 GN=RPS25A PE=3 SV=3	[more]

BLAST of MS002826 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CLE7	9.2e-48	100.00	40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111012531 PE=3 SV...	[more]
A0A1S3B608	4.6e-47	98.13	40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103486154 PE=3 SV=1	[more]
A0A5D3CKR9	1.0e-46	96.26	40S ribosomal protein S25 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1BYI5	1.0e-46	96.26	40S ribosomal protein S25 OS=Momordica charantia OX=3673 GN=LOC111006746 PE=3 SV...	[more]
A0A1S3C4W3	1.0e-46	96.26	40S ribosomal protein S25 OS=Cucumis melo OX=3656 GN=LOC103496510 PE=3 SV=1	[more]

BLAST of MS002826 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21580.1	1.6e-47	89.72	Ribosomal protein S25 family protein	[more]
AT4G34555.1	1.3e-46	89.62	Ribosomal protein S25 family protein	[more]
AT4G39200.1	1.7e-46	87.85	Ribosomal protein S25 family protein	[more]
AT2G21580.2	1.1e-45	88.79	Ribosomal protein S25 family protein	[more]
AT4G39200.2	1.2e-44	86.92	Ribosomal protein S25 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.63.20		coord: 21..108 e-value: 2.8E-40 score: 138.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	PANTHER	PTHR12850:SF31	BNAA04G12260D PROTEIN	coord: 2..108
IPR004977	Ribosomal protein S25	PFAM	PF03297	Ribosomal_S25	coord: 7..105 e-value: 1.3E-41 score: 140.9
IPR004977	Ribosomal protein S25	PANTHER	PTHR12850	40S RIBOSOMAL PROTEIN S25	coord: 2..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002826.1	MS002826.1	mRNA