MS002749 (gene) Bitter gourd (TR) v1

Overview


Name	MS002749
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II protein D1
Location	scaffold66: 256372 .. 256610 (-)
RNA-Seq Expression	MS002749
Synteny	MS002749

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTTACATTTCTTCCTAGCTGCTTGGCTTGCAGGAGGTATCTCGTTCACCGTTTTAAACTTTCAACTTAAATGGTTTTAATTTCAACCAATCTGTAGTTGATAGTTAAGGTCACGGTAATTTATATCTGGGCTAATGTTATTAAGTGTGTTAATCTTGATATGGAAGTTATGCATGAACGTAATGCTCACAGCTTCCCTCTACACCTAACTGTGGTTGAAGTTCCATCTATCAATGGA

mRNA sequence

TCTTTACATTTCTTCCTAGCTGCTTGGCTTGCAGGAGGTATCTCGTTCACCGTTTTAACTTTCAACTTAAATGGTTTTAATTTCAACCAATCTGTAGTTGATAGTGTCACGGTAATTTATATCTGGGCTAATGTTATTAAGTGTGTTAATCTTGATATGGAAGTTATGCATGAACGTAATGCTCACAGCTTCCCTCTACACCTAACTGTGGTTGAAGTTCCATCTATCAATGGA

Coding sequence (CDS)

TCTTTACATTTCTTCCTAGCTGCTTGGCTTGCAGGAGGTATCTCGTTCACCGTTTTAACTTTCAACTTAAATGGTTTTAATTTCAACCAATCTGTAGTTGATAGTGTCACGGTAATTTATATCTGGGCTAATGTTATTAAGTGTGTTAATCTTGATATGGAAGTTATGCATGAACGTAATGCTCACAGCTTCCCTCTACACCTAACTGTGGTTGAAGTTCCATCTATCAATGGA

Protein sequence

SLHFFLAAWLAGGISFTVLTFNLNGFNFNQSVVDSVTVIYIWANVIKCVNLDMEVMHERNAHSFPLHLTVVEVPSING

Homology

[Close]

BLAST of MS002749 vs. NCBI nr
Match: KJB15227.1 (hypothetical protein B456_002G165800 [Gossypium raimondii])

HSP 1 Score: 106.7 bits (265), Expect = 9.3e-20
Identity = 56/84 (66.67%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSVT-VIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FTVL      FNLNGFNFNQS+VDS + VI  WA++I C NL ME
Sbjct: 454 SLHFFLAAWPRVGIWFTVLGISTMAFNLNGFNFNQSIVDSQSRVINTWADIINCANLGME 513

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L  +E PS NG
Sbjct: 514 VMHERNAHNFPLDLAAIEAPSTNG 537

[Close]

BLAST of MS002749 vs. NCBI nr
Match: YP_009752646.1 (photosystem II protein D1 [Ampelosycios humblotii] >QIT05127.1 photosystem II protein D1 [Ampelosycios humblotii])

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 59/84 (70.24%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L VVEVPSING
Sbjct: 330 VMHERNAHNFPLDLAVVEVPSING 353

[Close]

BLAST of MS002749 vs. NCBI nr
Match: AEX95796.1 (photosystem II protein D1 [Ledebouria cordifolia])

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 59/84 (70.24%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L VVEVPSING
Sbjct: 330 VMHERNAHNFPLDLAVVEVPSING 353

[Close]

BLAST of MS002749 vs. NCBI nr
Match: QFV17782.1 (photosystem II protein D1 [Ranunculus sceleratus] >QFV19137.1 photosystem II protein D1 [Ranunculus bungei])

HSP 1 Score: 105.9 bits (263), Expect = 1.6e-19
Identity = 59/84 (70.24%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L VVEVPSING
Sbjct: 330 VMHERNAHNFPLDLAVVEVPSING 353

[Close]

BLAST of MS002749 vs. NCBI nr
Match: KAF7048875.1 (hypothetical protein CFC21_057534, partial [Triticum aestivum])

HSP 1 Score: 105.5 bits (262), Expect = 2.1e-19
Identity = 59/84 (70.24%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 143 SLHFFLAAWPIVGIWFTTLGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 202

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L VVEVPSING
Sbjct: 203 VMHERNAHNFPLDLAVVEVPSING 226

[Close]

BLAST of MS002749 vs. ExPASy Swiss-Prot
Match: Q2QDA8 (Photosystem II protein D1 OS=Cucumis sativus OX=3659 GN=psbA PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.0e-22
Identity = 58/84 (69.05%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L  VEVPSING
Sbjct: 330 VMHERNAHNFPLDLAAVEVPSING 353

[Close]

BLAST of MS002749 vs. ExPASy Swiss-Prot
Match: P10510 (Photosystem II protein D1 OS=Secale cereale OX=4550 GN=psbA PE=1 SV=3)

HSP 1 Score: 104.4 bits (259), Expect = 6.0e-22
Identity = 58/84 (69.05%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L  VEVPSING
Sbjct: 330 VMHERNAHNFPLDLAAVEVPSING 353

[Close]

BLAST of MS002749 vs. ExPASy Swiss-Prot
Match: P12463 (Photosystem II protein D1 OS=Triticum aestivum OX=4565 GN=psbA PE=3 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 6.0e-22
Identity = 58/84 (69.05%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L  VEVPSING
Sbjct: 330 VMHERNAHNFPLDLAAVEVPSING 353

[Close]

BLAST of MS002749 vs. ExPASy Swiss-Prot
Match: A1E9Y8 (Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-21
Identity = 57/84 (67.86%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L  +EVPSING
Sbjct: 330 VMHERNAHNFPLDLAALEVPSING 353

[Close]

BLAST of MS002749 vs. ExPASy Swiss-Prot
Match: P05337 (Photosystem II protein D1 OS=Hordeum vulgare OX=4513 GN=psbA PE=3 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-21
Identity = 57/84 (67.86%), Postives = 61/84 (72.62%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L  VEVP+ING
Sbjct: 330 VMHERNAHNFPLDLAAVEVPAING 353

[Close]

BLAST of MS002749 vs. ExPASy TrEMBL
Match: A0A0D2MBZ4 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G165800 PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.5e-20
Identity = 56/84 (66.67%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSVT-VIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FTVL      FNLNGFNFNQS+VDS + VI  WA++I C NL ME
Sbjct: 454 SLHFFLAAWPRVGIWFTVLGISTMAFNLNGFNFNQSIVDSQSRVINTWADIINCANLGME 513

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L  +E PS NG
Sbjct: 514 VMHERNAHNFPLDLAAIEAPSTNG 537

[Close]

BLAST of MS002749 vs. ExPASy TrEMBL
Match: H2FAW3 (Photosystem II protein D1 OS=Ledebouria cordifolia OX=65780 GN=psbA PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.7e-20
Identity = 59/84 (70.24%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L VVEVPSING
Sbjct: 330 VMHERNAHNFPLDLAVVEVPSING 353

[Close]

BLAST of MS002749 vs. ExPASy TrEMBL
Match: A0A6H0ETP7 (Photosystem II protein D1 OS=Ampelosycios humblotii OX=386639 GN=psbA PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.7e-20
Identity = 59/84 (70.24%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L VVEVPSING
Sbjct: 330 VMHERNAHNFPLDLAVVEVPSING 353

[Close]

BLAST of MS002749 vs. ExPASy TrEMBL
Match: A0A5P9RWU4 (Photosystem II protein D1 OS=Ranunculus sceleratus OX=147635 GN=psbA PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.7e-20
Identity = 59/84 (70.24%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L VVEVPSING
Sbjct: 330 VMHERNAHNFPLDLAVVEVPSING 353

[Close]

BLAST of MS002749 vs. ExPASy TrEMBL
Match: A0A5P9RZW9 (Photosystem II protein D1 OS=Ranunculus bungei OX=633653 GN=psbA PE=3 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 7.7e-20
Identity = 59/84 (70.24%), Postives = 62/84 (73.81%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L VVEVPSING
Sbjct: 330 VMHERNAHNFPLDLAVVEVPSING 353

[Close]

BLAST of MS002749 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 100.9 bits (250), Expect = 4.7e-22
Identity = 56/84 (66.67%), Postives = 59/84 (70.24%), Query Frame = 0


Query: 1   SLHFFLAAWLAGGISFTVL-----TFNLNGFNFNQSVVDSV-TVIYIWANVIKCVNLDME 60
           SLHFFLAAW   GI FT L      FNLNGFNFNQSVVDS   VI  WA++I   NL ME
Sbjct: 270 SLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGME 329

Query: 61  VMHERNAHSFPLHLTVVEVPSING 79
           VMHERNAH+FPL L  VE PS NG
Sbjct: 330 VMHERNAHNFPLDLAAVEAPSTNG 353

The following BLAST results are available for this feature:

BLAST of MS002749 vs. NCBI nr


Match Name	E-value	Identity	Description
KJB15227.1	9.3e-20	66.67	hypothetical protein B456_002G165800 [Gossypium raimondii]	[more]
YP_009752646.1	1.6e-19	70.24	photosystem II protein D1 [Ampelosycios humblotii] >QIT05127.1 photosystem II pr...	[more]
AEX95796.1	1.6e-19	70.24	photosystem II protein D1 [Ledebouria cordifolia]	[more]
QFV17782.1	1.6e-19	70.24	photosystem II protein D1 [Ranunculus sceleratus] >QFV19137.1 photosystem II pro...	[more]
KAF7048875.1	2.1e-19	70.24	hypothetical protein CFC21_057534, partial [Triticum aestivum]	[more]

BLAST of MS002749 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QDA8	6.0e-22	69.05	Photosystem II protein D1 OS=Cucumis sativus OX=3659 GN=psbA PE=3 SV=1	[more]
P10510	6.0e-22	69.05	Photosystem II protein D1 OS=Secale cereale OX=4550 GN=psbA PE=1 SV=3	[more]
P12463	6.0e-22	69.05	Photosystem II protein D1 OS=Triticum aestivum OX=4565 GN=psbA PE=3 SV=2	[more]
A1E9Y8	1.3e-21	67.86	Photosystem II protein D1 OS=Agrostis stolonifera OX=63632 GN=psbA PE=3 SV=1	[more]
P05337	1.3e-21	67.86	Photosystem II protein D1 OS=Hordeum vulgare OX=4513 GN=psbA PE=3 SV=1	[more]

BLAST of MS002749 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0D2MBZ4	4.5e-20	66.67	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_002G165800 PE=3 ...	[more]
H2FAW3	7.7e-20	70.24	Photosystem II protein D1 OS=Ledebouria cordifolia OX=65780 GN=psbA PE=3 SV=1	[more]
A0A6H0ETP7	7.7e-20	70.24	Photosystem II protein D1 OS=Ampelosycios humblotii OX=386639 GN=psbA PE=3 SV=1	[more]
A0A5P9RWU4	7.7e-20	70.24	Photosystem II protein D1 OS=Ranunculus sceleratus OX=147635 GN=psbA PE=3 SV=1	[more]
A0A5P9RZW9	7.7e-20	70.24	Photosystem II protein D1 OS=Ranunculus bungei OX=633653 GN=psbA PE=3 SV=1	[more]

BLAST of MS002749 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00020.1	4.7e-22	66.67	photosystem II reaction center protein A	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 1..78
None	No IPR available	PANTHER	PTHR33149:SF21	PHOTOSYSTEM II PROTEIN D1	coord: 1..78
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002749.1	MS002749.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity