MS002644 (gene) Bitter gourd (TR) v1

Overview


Name	MS002644
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Photosystem II 10 kDa polypeptide, chloroplastic
Location	scaffold111: 416956 .. 417586 (-)
RNA-Seq Expression	MS002644
Synteny	MS002644

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGCGTCGGTGATGACCTCCGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCGTCTCTCGCCAGGACTTCCGCCTCCTTCAAAGTCGAGGCCAGCGGCGGGAAGAAGATCAAGACCGACAAACCCTACGGTAGAATTAACCACCGATTATATCATGTGATTCTTGGCTTATTTAATTAGATTCTAACTCGTTCTTCGATGGAATGCGAGCAGGAATCAATGGTTCGATGAATTTGAGGGACGGACTTGATGCATCGGGAAGGAAGGGCAAGGTTGTTATCTCTGAATCTCTCTGAAATCTGTATCTTATTTGAATTTGCTATTTGATACTCTGCAACTGAGATTTGGTTCTGCTTTTGAATCTGATCGATTTAGGGCAAGGGAGTCTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGGTAAACAAGGTTTTTGGCTATGATTTTGTTCATAGTTCTCTGGTTTGGAAATGAAAACCTAAATTTACTATCATGTCAATGAACTCATGTATGTGTTCTATTCACCTACTCTAATTTGCAGTCCCATCTACGATACCAAGGACTGGTCTCCGAGTGGTGATGTCTATGTTGGTGGT

mRNA sequence

ATGGCGGCGTCGGTGATGACCTCCGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCGTCTCTCGCCAGGACTTCCGCCTCCTTCAAAGTCGAGGCCAGCGGCGGGAAGAAGATCAAGACCGACAAACCCTACGCAGGAATCAATGGTTCGATGAATTTGAGGGACGGACTTGATGCATCGGGAAGGAAGGGCAAGGGCAAGGGAGTCTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGTCCCATCTACGATACCAAGGACTGGTCTCCGAGTGGTGATGTCTATGTTGGTGGT

Coding sequence (CDS)

ATGGCGGCGTCGGTGATGACCTCCGTGAGTCTCAAACCAGCTCCCTTCACCGTCGAGAAATCGGCGAGAGGTCTTCCGTCTCTCGCCAGGACTTCCGCCTCCTTCAAAGTCGAGGCCAGCGGCGGGAAGAAGATCAAGACCGACAAACCCTACGCAGGAATCAATGGTTCGATGAATTTGAGGGACGGACTTGATGCATCGGGAAGGAAGGGCAAGGGCAAGGGAGTCTACCAATTTGTCGACAAGTATGGGGCCAATGTCGATGGCTACAGTCCCATCTACGATACCAAGGACTGGTCTCCGAGTGGTGATGTCTATGTTGGTGGT

Protein sequence

MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG

Homology

[Close]

BLAST of MS002644 vs. NCBI nr
Match: XP_022136536.1 (photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia])

HSP 1 Score: 208.4 bits (529), Expect = 3.2e-50
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNL 60
           MAASVMTSVSLKPAPFTVEKSA+GLPSLARTSASFKVEASGGKKIKTDKPY GINGSMNL
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARTSASFKVEASGGKKIKTDKPY-GINGSMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG
Sbjct: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 108

[Close]

BLAST of MS002644 vs. NCBI nr
Match: XP_038876356.1 (photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 203.0 bits (515), Expect = 1.3e-48
Identity = 104/109 (95.41%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNL 60
           MAASVMTSVSLKPAPFTVEKSA+GLPSLAR S  FKVEASGGKKIKTDKPY GINGSMNL
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARNSVPFKVEASGGKKIKTDKPY-GINGSMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG
Sbjct: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 108

[Close]

BLAST of MS002644 vs. NCBI nr
Match: XP_008451826.1 (PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo] >TYK16392.1 photosystem II 10 kDa polypeptide [Cucumis melo var. makuwa])

HSP 1 Score: 199.5 bits (506), Expect = 1.5e-47
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNL 60
           MAASVMTSVSLKPAPFTVEKSARGLPSLAR SASFKV ASGGKKIKTDKPY GINGSMNL
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPY-GINGSMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           RDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGG
Sbjct: 61  RDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGG 108

[Close]

BLAST of MS002644 vs. NCBI nr
Match: XP_022931545.1 (photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata] >XP_022985312.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita maxima] >XP_022985313.1 photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita maxima] >KAG6577072.1 Photosystem II 10 kDa polypeptide, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015080.1 Photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNL 60
           MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTDKPY GINGSMNL
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY-GINGSMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           RDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSPSGDVYVGG
Sbjct: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 108

[Close]

BLAST of MS002644 vs. NCBI nr
Match: XP_023553544.1 (photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 199.1 bits (505), Expect = 1.9e-47
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNL 60
           MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTDKPY GINGSMNL
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY-GINGSMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           RDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSPSGDVYVGG
Sbjct: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 108

[Close]

BLAST of MS002644 vs. ExPASy Swiss-Prot
Match: Q40519 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN=PSBR PE=2 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 2.8e-41
Identity = 89/110 (80.91%), Postives = 102/110 (92.73%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKSA-RGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMN 60
           MA++VM   SLKPAPF+VEK+A +GLPSLAR+S+SF+V+ASG KK+KTDKPY GINGSM+
Sbjct: 1   MASTVM---SLKPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPY-GINGSMS 60

Query: 61  LRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           LRDG+DASGRK KGKGVYQFVDKYGANVDGYSPIY+T DWSPSGDVYVGG
Sbjct: 61  LRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGG 106

[Close]

BLAST of MS002644 vs. ExPASy Swiss-Prot
Match: P06183 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN=PSBR PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.5e-39
Identity = 87/110 (79.09%), Postives = 100/110 (90.91%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMN 60
           MA++VM+S+SLKP  FT+EK S +GLPSLAR+S+SFKV ASG KK+KTDKPY GINGSM 
Sbjct: 1   MASTVMSSLSLKPT-FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPY-GINGSMA 60

Query: 61  LRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           LRDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WSPSGDVYVGG
Sbjct: 61  LRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGG 108

[Close]

BLAST of MS002644 vs. ExPASy Swiss-Prot
Match: Q40163 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081 GN=PSBR PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.5e-39
Identity = 86/110 (78.18%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMN 60
           MA++VM+S+SLKP  FT+EK S +GLPSL R+S+SFKV ASG KK+KTDKPY GINGSM 
Sbjct: 1   MASTVMSSLSLKPT-FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPY-GINGSMA 60

Query: 61  LRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           LRDG+DASGRK KGKGVYQ+VDKYGANVDGYSPIY+T +WSPSGDVYVGG
Sbjct: 61  LRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGG 108

[Close]

BLAST of MS002644 vs. ExPASy Swiss-Prot
Match: P27202 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSBR PE=1 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-37
Identity = 85/111 (76.58%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSM 60
           MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+ ASG KKIKTDKP+ GINGSM
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPF-GINGSM 60

Query: 61  NLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           +LRDG+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +WS SGDVY GG
Sbjct: 61  DLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGG 110

[Close]

BLAST of MS002644 vs. ExPASy Swiss-Prot
Match: P49108 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris OX=3711 GN=PSBR PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 7.1e-37
Identity = 86/112 (76.79%), Postives = 98/112 (87.50%), Query Frame = 0


Query: 1   MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTS-ASFKVEASGGKKIKTDKPYAGINGS 60
           MAASVM +SV+LKPA FTVEK SARGLPSL R S +SF++ ASG KKIKTDKP+ G+NGS
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPF-GVNGS 60

Query: 61  MNLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           M+LRDG+DASGRKGKG GVY+FVDKYGANVDGYSPIY+  +WS SGDVY GG
Sbjct: 61  MDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGG 111

[Close]

BLAST of MS002644 vs. ExPASy TrEMBL
Match: A0A6J1C3S3 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008214 PE=3 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNL 60
           MAASVMTSVSLKPAPFTVEKSA+GLPSLARTSASFKVEASGGKKIKTDKPY GINGSMNL
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSAKGLPSLARTSASFKVEASGGKKIKTDKPY-GINGSMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG
Sbjct: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 108

[Close]

BLAST of MS002644 vs. ExPASy TrEMBL
Match: A0A5D3CXX1 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001860 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.1e-48
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNL 60
           MAASVMTSVSLKPAPFTVEKSARGLPSLAR SASFKV ASGGKKIKTDKPY GINGSMNL
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPY-GINGSMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           RDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGG
Sbjct: 61  RDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGG 108

[Close]

BLAST of MS002644 vs. ExPASy TrEMBL
Match: A0A1S3BSD1 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103492995 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.1e-48
Identity = 103/109 (94.50%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNL 60
           MAASVMTSVSLKPAPFTVEKSARGLPSLAR SASFKV ASGGKKIKTDKPY GINGSMNL
Sbjct: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARNSASFKVVASGGKKIKTDKPY-GINGSMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           RDG+DASGRK KGKGVYQFVDKYGANVDGYSPIYDTKDWSP+GDVYVGG
Sbjct: 61  RDGVDASGRKPKGKGVYQFVDKYGANVDGYSPIYDTKDWSPTGDVYVGG 108

[Close]

BLAST of MS002644 vs. ExPASy TrEMBL
Match: A0A6J1JDA0 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111483357 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.3e-48
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNL 60
           MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTDKPY GINGSMNL
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY-GINGSMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           RDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSPSGDVYVGG
Sbjct: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 108

[Close]

BLAST of MS002644 vs. ExPASy TrEMBL
Match: A0A6J1EZP8 (Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437690 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.3e-48
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 0


Query: 1   MAASVMTSVSLKPAPFTVEKSARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSMNL 60
           MAASVMTSVSLKPAPFTVEK+ARG+PSLAR S  FKVEASGGKKIKTDKPY GINGSMNL
Sbjct: 1   MAASVMTSVSLKPAPFTVEKAARGIPSLARKSGFFKVEASGGKKIKTDKPY-GINGSMNL 60

Query: 61  RDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           RDG+DASGRKGKGKGVYQ+VDKYGANVDGYSPIYDTKDWSPSGDVYVGG
Sbjct: 61  RDGVDASGRKGKGKGVYQYVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 108

[Close]

BLAST of MS002644 vs. TAIR 10
Match: AT1G79040.1 (photosystem II subunit R )

HSP 1 Score: 156.0 bits (393), Expect = 1.7e-38
Identity = 85/111 (76.58%), Postives = 96/111 (86.49%), Query Frame = 0


Query: 1   MAASVM-TSVSLKPAPFTVEK-SARGLPSLARTSASFKVEASGGKKIKTDKPYAGINGSM 60
           MAASVM +SV+LKPA FTVEK +ARGLPSL R   SFK+ ASG KKIKTDKP+ GINGSM
Sbjct: 1   MAASVMLSSVTLKPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPF-GINGSM 60

Query: 61  NLRDGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDTKDWSPSGDVYVGG 110
           +LRDG+DASGRKGKG GVY++VDKYGANVDGYSPIY+  +WS SGDVY GG
Sbjct: 61  DLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGG 110

The following BLAST results are available for this feature:

BLAST of MS002644 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136536.1	3.2e-50	98.17	photosystem II 10 kDa polypeptide, chloroplastic [Momordica charantia]	[more]
XP_038876356.1	1.3e-48	95.41	photosystem II 10 kDa polypeptide, chloroplastic-like [Benincasa hispida]	[more]
XP_008451826.1	1.5e-47	94.50	PREDICTED: photosystem II 10 kDa polypeptide, chloroplastic [Cucumis melo] >TYK1...	[more]
XP_022931545.1	1.9e-47	92.66	photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita moschata] >XP_022985...	[more]
XP_023553544.1	1.9e-47	92.66	photosystem II 10 kDa polypeptide, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS002644 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q40519	2.8e-41	80.91	Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum OX=4097 GN...	[more]
P06183	1.5e-39	79.09	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum OX=4113 GN...	[more]
Q40163	4.5e-39	78.18	Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
P27202	2.4e-37	76.58	Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P49108	7.1e-37	76.79	Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris OX=3711 ...	[more]

BLAST of MS002644 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3S3	1.5e-50	98.17	Photosystem II 10 kDa polypeptide, chloroplastic OS=Momordica charantia OX=3673 ...	[more]
A0A5D3CXX1	7.1e-48	94.50	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S3BSD1	7.1e-48	94.50	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1JDA0	9.3e-48	92.66	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EZP8	9.3e-48	92.66	Photosystem II 10 kDa polypeptide, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of MS002644 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G79040.1	1.7e-38	76.58	photosystem II subunit R	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006814	Photosystem II PsbR	PFAM	PF04725	PsbR	coord: 40..109 e-value: 1.1E-31 score: 109.0
IPR006814	Photosystem II PsbR	PANTHER	PTHR34369	PHOTOSYSTEM II 10 KDA POLYPEPTIDE, CHLOROPLASTIC	coord: 1..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002644.1	MS002644.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0042651	thylakoid membrane