MS002622 (gene) Bitter gourd (TR) v1

Overview


Name	MS002622
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Transmembrane protein
Location	scaffold111: 229654 .. 230151 (-)
RNA-Seq Expression	MS002622
Synteny	MS002622

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGATTGCAGCAATTGGGGATTCCAGTTTTGGGCATTGTTGCAGCTGCAGCCATCACCTTCTATGCCGTAAGCTTTGCAGAGCTTCGAGAGGTACATTCATTTTTCTCCCAAAAACTTTTACATTTTTTATTTTCTATTTCTGTGTTCTCATCCTACAATATTTGTAGTTCGAGTCCATAATCTTAGATTTCGGAGCTTTGGGTATGTGTGTGTGACAATTTTATTCTTGAAGAGTTATAAAACCGTCCTATGTGTGAAGAACTAATGCTATATCTTAATTACTGTTTATTTTGAGATCAGTTTAGGGGATATGTTTGTACTACACTTCTTTTTATTATTGTAATAGAAAACTAATGATCTTTAAAATTGGGGATTGTGAAGAAATCATTCAAAGATTTAGATGAATCAGAAGATGAAAATGGAGGGTTTAAGATGACTTCAAGCTCTAGAGAAAGGCGAGCAAGGAGGAAAGCTGAAAAGGAAGCTAAAAGA

mRNA sequence

ATGGATGGATTGCAGCAATTGGGGATTCCAGTTTTGGGCATTGTTGCAGCTGCAGCCATCACCTTCTATGCCGTAAGCTTTGCAGAGCTTCGAGAGAAATCATTCAAAGATTTAGATGAATCAGAAGATGAAAATGGAGGGTTTAAGATGACTTCAAGCTCTAGAGAAAGGCGAGCAAGGAGGAAAGCTGAAAAGGAAGCTAAAAGA

Coding sequence (CDS)

ATGGATGGATTGCAGCAATTGGGGATTCCAGTTTTGGGCATTGTTGCAGCTGCAGCCATCACCTTCTATGCCGTAAGCTTTGCAGAGCTTCGAGAGAAATCATTCAAAGATTTAGATGAATCAGAAGATGAAAATGGAGGGTTTAAGATGACTTCAAGCTCTAGAGAAAGGCGAGCAAGGAGGAAAGCTGAAAAGGAAGCTAAAAGA

Protein sequence

MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRARRKAEKEAKR

Homology

[Close]

BLAST of MS002622 vs. NCBI nr
Match: XP_022136426.1 (uncharacterized protein LOC111008135 [Momordica charantia])

HSP 1 Score: 125.2 bits (313), Expect = 2.2e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60
          MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR
Sbjct: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MS002622 vs. NCBI nr
Match: XP_023545078.1 (uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo] >KAG6600446.1 hypothetical protein SDJN03_05679, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-22
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60
          MDGLQQLG+P++GIVAAAAITFYAVSF+E+REKSF+DLDESEDEN GFKMT+SSRERRAR
Sbjct: 1  MDGLQQLGVPLMGIVAAAAITFYAVSFSEIREKSFRDLDESEDENPGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MS002622 vs. NCBI nr
Match: XP_038900556.1 (uncharacterized protein LOC120087738 [Benincasa hispida])

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-22
Identity = 61/69 (88.41%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60
          MDGLQ++GIP+LGIVAAAAITFYAVSF+ELREKSF+DLDESED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFRDLDESEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MS002622 vs. NCBI nr
Match: XP_008451897.1 (PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451899.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451900.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_016901164.1 PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >KAA0044991.1 uncharacterized protein E6C27_scaffold74G003010 [Cucumis melo var. makuwa] >TYK16480.1 uncharacterized protein E5676_scaffold21G002830 [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 3.9e-22
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60
          MDGLQ++GIP+LGIVAAAAITFYAVSF+ELREKSFKDLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MS002622 vs. NCBI nr
Match: XP_004147735.1 (uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.1 uncharacterized protein LOC101211279 [Cucumis sativus] >KGN53493.1 hypothetical protein Csa_014484 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 6.7e-22
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60
          MDGLQ++GIP+LGIVAAAAITFYAVSF+ELREKSFKDLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MS002622 vs. ExPASy TrEMBL
Match: A0A6J1C3G9 (uncharacterized protein LOC111008135 OS=Momordica charantia OX=3673 GN=LOC111008135 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60
          MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR
Sbjct: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MS002622 vs. ExPASy TrEMBL
Match: A0A1S3BRZ5 (uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60
          MDGLQ++GIP+LGIVAAAAITFYAVSF+ELREKSFKDLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MS002622 vs. ExPASy TrEMBL
Match: A0A5D3CYP3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002830 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60
          MDGLQ++GIP+LGIVAAAAITFYAVSF+ELREKSFKDLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPILGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MS002622 vs. ExPASy TrEMBL
Match: A0A0A0KVD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 61/69 (88.41%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60
          MDGLQ++GIP+LGIVAAAAITFYAVSF+ELREKSFKDLDE ED+ GGF+MTSSSRERRAR
Sbjct: 1  MDGLQEMGIPMLGIVAAAAITFYAVSFSELREKSFKDLDELEDQKGGFQMTSSSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MS002622 vs. ExPASy TrEMBL
Match: A0A6J1J6A4 (uncharacterized protein LOC111482149 OS=Cucurbita maxima OX=3661 GN=LOC111482149 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.6e-22
Identity = 60/69 (86.96%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60
          MDGLQQ G+P++GIVAAAAITFYAVSF+E+REKSF+DLDESEDEN GFKMT+SSRERRAR
Sbjct: 1  MDGLQQWGVPLVGIVAAAAITFYAVSFSEIREKSFRDLDESEDENRGFKMTASSRERRAR 60

Query: 61 RKAEKEAKR 70
          RKAEKEAKR
Sbjct: 61 RKAEKEAKR 69

[Close]

BLAST of MS002622 vs. TAIR 10
Match: AT3G22210.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 3.2e-14
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 0


Query: 1  MDGLQQLGIPVLGIVAAAAITFYAVSFAELREKSFKDLDESEDENGGFKMTSSSRERRAR 60
          M+G+  + +PVLGIVA + +TFYAVSFAE+REKSFKD+ +SE+E  GFK + SSRERR++
Sbjct: 1  MEGISHIALPVLGIVAVSVVTFYAVSFAEIREKSFKDVYDSENE-VGFKTSLSSRERRSK 60

Query: 61 RKAEKE 67
          R+A K+
Sbjct: 61 REANKK 65

The following BLAST results are available for this feature:

BLAST of MS002622 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136426.1	2.2e-25	100.00	uncharacterized protein LOC111008135 [Momordica charantia]	[more]
XP_023545078.1	1.8e-22	88.41	uncharacterized protein LOC111804483 [Cucurbita pepo subsp. pepo] >KAG6600446.1 ...	[more]
XP_038900556.1	3.0e-22	88.41	uncharacterized protein LOC120087738 [Benincasa hispida]	[more]
XP_008451897.1	3.9e-22	88.41	PREDICTED: uncharacterized protein LOC103493052 [Cucumis melo] >XP_008451898.1 P...	[more]
XP_004147735.1	6.7e-22	88.41	uncharacterized protein LOC101211279 [Cucumis sativus] >XP_011653258.1 uncharact...	[more]

BLAST of MS002622 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002622 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C3G9	1.1e-25	100.00	uncharacterized protein LOC111008135 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A1S3BRZ5	1.9e-22	88.41	uncharacterized protein LOC103493052 OS=Cucumis melo OX=3656 GN=LOC103493052 PE=...	[more]
A0A5D3CYP3	1.9e-22	88.41	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KVD4	3.3e-22	88.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056810 PE=4 SV=1	[more]
A0A6J1J6A4	5.6e-22	86.96	uncharacterized protein LOC111482149 OS=Cucurbita maxima OX=3661 GN=LOC111482149...	[more]

BLAST of MS002622 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G22210.1	3.2e-14	60.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..69
None	No IPR available	PANTHER	PTHR37225	OSJNBA0011F23.3 PROTEIN	coord: 1..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002622.1	MS002622.1	mRNA