MS002612 (gene) Bitter gourd (TR) v1

Overview


Name	MS002612
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Retrotrans_gag domain-containing protein
Location	scaffold111: 147206 .. 147544 (-)
RNA-Seq Expression	MS002612
Synteny	MS002612

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AACATCGAAAAGTTTTACGACGAGTTCTGCAGATTTAAGGGGGAAATGAATGGTGCGATAGCCGAGCAGAGGGAAGAAGATAATAGAAACAAACTGGAGTTTGTTTCAGATGAATGTCCTTTTTACAGGCACCCCATGAATGGCAAACACTGGATTTTCCCAATGGAAAAAATGTTTGATATCATAGGATGCTGTGATGACAACCAAAAGCTTGATTTTGCACTCCTCAGGCTGCGAGATGATGAACTTTTATGGTGGATGGGAGAGCAAAAATGTGCAGAAGCAGAAGCAGAAGCCATGACGTGGGAGATGTTCAAGTTCTTATTCCAGGATAGGTAC

mRNA sequence

AACATCGAAAAGTTTTACGACGAGTTCTGCAGATTTAAGGGGGAAATGAATGGTGCGATAGCCGAGCAGAGGGAAGAAGATAATAGAAACAAACTGGAGTTTGTTTCAGATGAATGTCCTTTTTACAGGCACCCCATGAATGGCAAACACTGGATTTTCCCAATGGAAAAAATGTTTGATATCATAGGATGCTGTGATGACAACCAAAAGCTTGATTTTGCACTCCTCAGGCTGCGAGATGATGAACTTTTATGGTGGATGGGAGAGCAAAAATGTGCAGAAGCAGAAGCAGAAGCCATGACGTGGGAGATGTTCAAGTTCTTATTCCAGGATAGGTAC

Coding sequence (CDS)

AACATCGAAAAGTTTTACGACGAGTTCTGCAGATTTAAGGGGGAAATGAATGGTGCGATAGCCGAGCAGAGGGAAGAAGATAATAGAAACAAACTGGAGTTTGTTTCAGATGAATGTCCTTTTTACAGGCACCCCATGAATGGCAAACACTGGATTTTCCCAATGGAAAAAATGTTTGATATCATAGGATGCTGTGATGACAACCAAAAGCTTGATTTTGCACTCCTCAGGCTGCGAGATGATGAACTTTTATGGTGGATGGGAGAGCAAAAATGTGCAGAAGCAGAAGCAGAAGCCATGACGTGGGAGATGTTCAAGTTCTTATTCCAGGATAGGTAC

Protein sequence

NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLEFVSDECPFYRHPMNGKHWIFPMEKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQDRY

Homology

[Close]

BLAST of MS002612 vs. NCBI nr
Match: TYK16471.1 (uncharacterized protein E5676_scaffold21G002740 [Cucumis melo var. makuwa])

HSP 1 Score: 82.0 bits (201), Expect = 3.5e-12
Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 1   NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPME 60
           N+   YDE C    E+    A+Q +E+  NK   F + E P +     P+  + WI  +E
Sbjct: 25  NLGNVYDEICNLVSEVRIIAAKQTDEERSNKSSMFFACEPPSFGEDTDPLVAQRWILILE 84

Query: 61  KMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQDRY 114
            +FD+I  C D QK+ FA LRL+D    WWM      EA+   +TWE FK LF+ RY
Sbjct: 85  NIFDLIR-CSDKQKVSFASLRLKDAAFSWWMVLHTDLEADGVTVTWEKFKELFEKRY 140

[Close]

BLAST of MS002612 vs. NCBI nr
Match: XP_004147729.1 (uncharacterized protein LOC101209793 [Cucumis sativus] >KGN53481.1 hypothetical protein Csa_015100 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 4.6e-12
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1   NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPME 60
           N+   YDE C    EM    A+Q +E+  NK   F + E P +     P+  + WI  +E
Sbjct: 34  NLGNVYDEICNLVSEMRIIAAKQTDEERTNKSSMFFACEPPSFGEDTDPLVAQRWILILE 93

Query: 61  KMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQDRY 114
            +FD+I C D++ K+ FA LRL+D    WWM      EA+   +TW+ FK LF+ RY
Sbjct: 94  NIFDLIRCSDEH-KVSFACLRLKDAAFSWWMVMHTDLEADGVTVTWQKFKELFEKRY 149

[Close]

BLAST of MS002612 vs. NCBI nr
Match: KAA0045000.1 (uncharacterized protein E6C27_scaffold74G003100 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 1   NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPME 60
           N+   YDE C    E+    A+Q +E+  NK   F + E P +     P+  + WI  +E
Sbjct: 25  NLGNVYDEICNLVSEVRIIAAKQTDEERSNKSSMFFACEPPSFGEDTDPLVAQRWILILE 84

Query: 61  KMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQDRY 114
            +FD+I  C D QK+ FA LRL+D    WWM      EA+   +TWE  K LF+ RY
Sbjct: 85  NIFDLIR-CSDKQKVSFASLRLKDAAFSWWMVLHTDLEADGVTVTWEKLKELFEKRY 140

[Close]

BLAST of MS002612 vs. NCBI nr
Match: KAG6577099.1 (hypothetical protein SDJN03_24673, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-11
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 1   NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFYRH---PMNGKHWIFPM 60
           N+    DE C    E +    A Q  E++ +K  +F   + P++     P+  K W+  +
Sbjct: 15  NLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGL 74

Query: 61  EKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQDRY 114
           E +FD IGC D+ QK+ FA LRL+D  L WW+  ++   A+  A+TWE FK LF  RY
Sbjct: 75  ENIFDCIGCSDE-QKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRY 131

[Close]

BLAST of MS002612 vs. NCBI nr
Match: KAG7015101.1 (hypothetical protein SDJN02_22734, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 77.8 bits (190), Expect = 6.7e-11
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 1   NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFYRH---PMNGKHWIFPM 60
           N+    DE C    E +    A Q  E++ +K  +F   + P++     P+  K W+  +
Sbjct: 15  NLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTGPLVAKRWVLGL 74

Query: 61  EKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQDRY 114
           E +FD IGC D+ QK+ FA LRL+D  L WW+  ++   A+  A+TWE FK LF  RY
Sbjct: 75  ENIFDCIGCSDE-QKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRY 131

[Close]

BLAST of MS002612 vs. ExPASy TrEMBL
Match: A0A5D3CX20 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G002740 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.7e-12
Identity = 45/117 (38.46%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 1   NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPME 60
           N+   YDE C    E+    A+Q +E+  NK   F + E P +     P+  + WI  +E
Sbjct: 25  NLGNVYDEICNLVSEVRIIAAKQTDEERSNKSSMFFACEPPSFGEDTDPLVAQRWILILE 84

Query: 61  KMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQDRY 114
            +FD+I  C D QK+ FA LRL+D    WWM      EA+   +TWE FK LF+ RY
Sbjct: 85  NIFDLIR-CSDKQKVSFASLRLKDAAFSWWMVLHTDLEADGVTVTWEKFKELFEKRY 140

[Close]

BLAST of MS002612 vs. ExPASy TrEMBL
Match: A0A0A0L042 (Retrotrans_gag domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G056700 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-12
Identity = 44/117 (37.61%), Postives = 63/117 (53.85%), Query Frame = 0


Query: 1   NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPME 60
           N+   YDE C    EM    A+Q +E+  NK   F + E P +     P+  + WI  +E
Sbjct: 34  NLGNVYDEICNLVSEMRIIAAKQTDEERTNKSSMFFACEPPSFGEDTDPLVAQRWILILE 93

Query: 61  KMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQDRY 114
            +FD+I C D++ K+ FA LRL+D    WWM      EA+   +TW+ FK LF+ RY
Sbjct: 94  NIFDLIRCSDEH-KVSFACLRLKDAAFSWWMVMHTDLEADGVTVTWQKFKELFEKRY 149

[Close]

BLAST of MS002612 vs. ExPASy TrEMBL
Match: A0A5A7TP79 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003100 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.5e-12
Identity = 44/117 (37.61%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 1   NIEKFYDEFCRFKGEMNGAIAEQREEDNRNKLE-FVSDECPFY---RHPMNGKHWIFPME 60
           N+   YDE C    E+    A+Q +E+  NK   F + E P +     P+  + WI  +E
Sbjct: 25  NLGNVYDEICNLVSEVRIIAAKQTDEERSNKSSMFFACEPPSFGEDTDPLVAQRWILILE 84

Query: 61  KMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQDRY 114
            +FD+I  C D QK+ FA LRL+D    WWM      EA+   +TWE  K LF+ RY
Sbjct: 85  NIFDLIR-CSDKQKVSFASLRLKDAAFSWWMVLHTDLEADGVTVTWEKLKELFEKRY 140

[Close]

BLAST of MS002612 vs. ExPASy TrEMBL
Match: A0A6J1EYB6 (uncharacterized protein LOC111437567 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111437567 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.2e-11
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 1   NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFY---RHPMNGKHWIFPM 60
           N+    DE C    E +    A Q  E++ +K  +F   + P++     P+  K W+  +
Sbjct: 15  NLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTDPLVAKRWVLGL 74

Query: 61  EKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQDRY 114
           E +FD IGC D+ QK+ FA LRL+D  L WW+  ++   A+  A+TWE FK LF  RY
Sbjct: 75  ENIFDCIGCSDE-QKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRY 131

[Close]

BLAST of MS002612 vs. ExPASy TrEMBL
Match: A0A6J1EZ79 (uncharacterized protein LOC111437567 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111437567 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.2e-11
Identity = 43/118 (36.44%), Postives = 64/118 (54.24%), Query Frame = 0


Query: 1   NIEKFYDEFCRFKGE-MNGAIAEQREEDNRNKL-EFVSDECPFY---RHPMNGKHWIFPM 60
           N+    DE C    E +    A Q  E++ +K  +F   + P++     P+  K W+  +
Sbjct: 2   NLGDVCDEICSLIREGLRVVAARQTNEEHNSKFNQFFVCQPPWFGEDTDPLVAKRWVLGL 61

Query: 61  EKMFDIIGCCDDNQKLDFALLRLRDDELLWWMGEQKCAEAEAEAMTWEMFKFLFQDRY 114
           E +FD IGC D+ QK+ FA LRL+D  L WW+  ++   A+  A+TWE FK LF  RY
Sbjct: 62  ENIFDCIGCSDE-QKVSFACLRLKDSALSWWIVSKRYLNADGAAVTWEKFKDLFYKRY 118

The following BLAST results are available for this feature:

BLAST of MS002612 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16471.1	3.5e-12	38.46	uncharacterized protein E5676_scaffold21G002740 [Cucumis melo var. makuwa]	[more]
XP_004147729.1	4.6e-12	37.61	uncharacterized protein LOC101209793 [Cucumis sativus] >KGN53481.1 hypothetical ...	[more]
KAA0045000.1	1.8e-11	37.61	uncharacterized protein E6C27_scaffold74G003100 [Cucumis melo var. makuwa]	[more]
KAG6577099.1	6.7e-11	36.44	hypothetical protein SDJN03_24673, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7015101.1	6.7e-11	36.44	hypothetical protein SDJN02_22734, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of MS002612 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002612 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CX20	1.7e-12	38.46	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0L042	2.2e-12	37.61	Retrotrans_gag domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G056...	[more]
A0A5A7TP79	8.5e-12	37.61	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A6J1EYB6	3.2e-11	36.44	uncharacterized protein LOC111437567 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EZ79	3.2e-11	36.44	uncharacterized protein LOC111437567 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of MS002612 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002612.1	MS002612.1	mRNA