MS002373 (gene) Bitter gourd (TR) v1

Overview


Name	MS002373
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein isoform 1
Location	scaffold30: 4457940 .. 4458239 (+)
RNA-Seq Expression	MS002373
Synteny	MS002373

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGAAATGGGAGGAGCTGAAATAATGGTTGCTGGATCATGCGTGTTTGATGGGATATTGAGCATATCAATGGAAGATTTTTTGATCGAGAGAAGGCCTTATCATCGCAACTGTGGCTGCAAATTACACATCAAAAATGGCTCTTGCCCACATCCTCCTTTCAAAACTTCTTCTCTTTCGTTTATGAGAAACCAAAAATGGACCAAAACTACTTCTCTTCACATTCAATCTGCCTCCAAATTCTCCTCCCTTCCTTCTCCTCTTCGACACCCCGAACCAGATATTATTACTGACGAG

mRNA sequence

AAAAAAGAAATGGGAGGAGCTGAAATAATGGTTGCTGGATCATGCGTGTTTGATGGGATATTGAGCATATCAATGGAAGATTTTTTGATCGAGAGAAGGCCTTATCATCGCAACTGTGGCTGCAAATTACACATCAAAAATGGCTCTTGCCCACATCCTCCTTTCAAAACTTCTTCTCTTTCGTTTATGAGAAACCAAAAATGGACCAAAACTACTTCTCTTCACATTCAATCTGCCTCCAAATTCTCCTCCCTTCCTTCTCCTCTTCGACACCCCGAACCAGATATTATTACTGACGAG

Coding sequence (CDS)

AAAAAAGAAATGGGAGGAGCTGAAATAATGGTTGCTGGATCATGCGTGTTTGATGGGATATTGAGCATATCAATGGAAGATTTTTTGATCGAGAGAAGGCCTTATCATCGCAACTGTGGCTGCAAATTACACATCAAAAATGGCTCTTGCCCACATCCTCCTTTCAAAACTTCTTCTCTTTCGTTTATGAGAAACCAAAAATGGACCAAAACTACTTCTCTTCACATTCAATCTGCCTCCAAATTCTCCTCCCTTCCTTCTCCTCTTCGACACCCCGAACCAGATATTATTACTGACGAG

Protein sequence

KKEMGGAEIMVAGSCVFDGILSISMEDFLIERRPYHRNCGCKLHIKNGSCPHPPFKTSSLSFMRNQKWTKTTSLHIQSASKFSSLPSPLRHPEPDIITDE

Homology

[Close]

BLAST of MS002373 vs. NCBI nr
Match: KAG6587851.1 (hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.1 bits (240), Expect = 9.4e-17
Identity = 51/85 (60.00%), Postives = 61/85 (71.76%), Query Frame = 0


Query: 6  GAEIMVAGSCVFDGILSISMEDFLIERRPYHRNCGCKLH--IKNGSCPHPPFKTSSLSFM 65
          G E+M  G CVFDG  SISM DFLIERRPYHRNCGC LH  +KNG CPH     SS+SF+
Sbjct: 2  GGEMM--GGCVFDG--SISMRDFLIERRPYHRNCGCALHHRLKNGGCPHA--LNSSVSFL 61

Query: 66 RNQKWTKTTSLHIQSASKFSSLPSP 89
          + +KWT T  L IQ+ S+FS+  +P
Sbjct: 62 KARKWTDTCRLQIQAMSEFSAHAAP 80

[Close]

BLAST of MS002373 vs. NCBI nr
Match: XP_023531633.1 (uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-16
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 6  GAEIMVAGSCVFDGILSISMEDFLIERRPYHRNCGCKLH--IKNGSCPHPPFKTSSLSFM 65
          G E+M  G CVFDG  SISM DFLIERRPYHRNCGC LH   KNG CPH     +S+SF+
Sbjct: 2  GGEVM--GGCVFDG--SISMHDFLIERRPYHRNCGCALHHRAKNGGCPHA--LNTSVSFL 61

Query: 66 RNQKWTKTTSLHIQSASKFSSLPSP 89
          + +KWT T  L IQ+ S+FS+  +P
Sbjct: 62 KARKWTDTCRLQIQAMSEFSAHAAP 80

[Close]

BLAST of MS002373 vs. NCBI nr
Match: XP_023531631.1 (uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 2.7e-16
Identity = 50/85 (58.82%), Postives = 60/85 (70.59%), Query Frame = 0


Query: 6  GAEIMVAGSCVFDGILSISMEDFLIERRPYHRNCGCKLH--IKNGSCPHPPFKTSSLSFM 65
          G E+M  G CVFDG  SISM DFLIERRPYHRNCGC LH   KNG CPH     +S+SF+
Sbjct: 2  GGEVM--GGCVFDG--SISMHDFLIERRPYHRNCGCALHHRAKNGGCPHA--LNTSVSFL 61

Query: 66 RNQKWTKTTSLHIQSASKFSSLPSP 89
          + +KWT T  L IQ+ S+FS+  +P
Sbjct: 62 KARKWTDTCRLQIQAMSEFSAHAAP 80

[Close]

BLAST of MS002373 vs. NCBI nr
Match: KAA0050036.1 (hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK03640.1 hypothetical protein E5676_scaffold1369G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 4.1e-12
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 2   KEMGGAEIMVAGSCVFDGILSISMEDFLIERRPYHRNCGCKLH---IKNG-SCPHPPFKT 61
           ++MGG    V GSCVFDG  S+SM+DFLIERRPYHRNCGC LH    +NG +C H     
Sbjct: 59  EKMGG----VVGSCVFDG--SLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLK 118

Query: 62  SSLSFMRNQKWTKTTSLHIQSASKFSS 85
           +S+SF++ QK   T+   ++S+SK SS
Sbjct: 119 NSVSFLKTQKCPITSLQILRSSSKVSS 139

[Close]

BLAST of MS002373 vs. NCBI nr
Match: OMO52287.1 (hypothetical protein CCACVL1_29281 [Corchorus capsularis])

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-11
Identity = 44/83 (53.01%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 5  GGAEIMVAGSCVFDGILSISMEDFLIERRPYHRNCGCKLHIKNGSCPHPPFKTSSLSFMR 64
          G AE+M    CVF+G  SI M+D LIERRPYHRNCGC LH   G+C    F T +LSF +
Sbjct: 4  GAAEMMF--RCVFEG--SIVMQDTLIERRPYHRNCGCALHKLKGACSSTCFGTRNLSFPK 63

Query: 65 NQKWTKTTSLHIQSASKFSSLPS 88
            KW + +     SASKFSS  S
Sbjct: 64 KHKWNECSLSVSISASKFSSQSS 82

[Close]

BLAST of MS002373 vs. ExPASy TrEMBL
Match: A0A5A7U781 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00690 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.0e-12
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 2   KEMGGAEIMVAGSCVFDGILSISMEDFLIERRPYHRNCGCKLH---IKNG-SCPHPPFKT 61
           ++MGG    V GSCVFDG  S+SM+DFLIERRPYHRNCGC LH    +NG +C H     
Sbjct: 59  EKMGG----VVGSCVFDG--SLSMQDFLIERRPYHRNCGCALHDDRFRNGAACSHAMKLK 118

Query: 62  SSLSFMRNQKWTKTTSLHIQSASKFSS 85
           +S+SF++ QK   T+   ++S+SK SS
Sbjct: 119 NSVSFLKTQKCPITSLQILRSSSKVSS 139

[Close]

BLAST of MS002373 vs. ExPASy TrEMBL
Match: A0A1R3G2J8 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_29281 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.3e-11
Identity = 44/83 (53.01%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 5  GGAEIMVAGSCVFDGILSISMEDFLIERRPYHRNCGCKLHIKNGSCPHPPFKTSSLSFMR 64
          G AE+M    CVF+G  SI M+D LIERRPYHRNCGC LH   G+C    F T +LSF +
Sbjct: 4  GAAEMMF--RCVFEG--SIVMQDTLIERRPYHRNCGCALHKLKGACSSTCFGTRNLSFPK 63

Query: 65 NQKWTKTTSLHIQSASKFSSLPS 88
            KW + +     SASKFSS  S
Sbjct: 64 KHKWNECSLSVSISASKFSSQSS 82

[Close]

BLAST of MS002373 vs. ExPASy TrEMBL
Match: A0A0A0LZ02 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.6e-09
Identity = 44/92 (47.83%), Postives = 60/92 (65.22%), Query Frame = 0


Query: 2  KEMGGAEIMVAGSCVFDGILSISMEDFLIERRPYHRNCGCKLH---IKNG-SCPHPPFKT 61
          ++MGG      GS VFDG  S+S++ FLIERRPYHRNCGC LH   I+NG +C H     
Sbjct: 2  EKMGG-----VGSRVFDG--SLSLQSFLIERRPYHRNCGCALHDDRIRNGAACSHALKSK 61

Query: 62 SSLSFMRNQKWTKTTSLHIQSASK-FSSLPSP 89
          +S+SF++ QK  KT+   + S+S+ F +  SP
Sbjct: 62 NSVSFLKTQKCPKTSLQILPSSSRQFVNSESP 86

[Close]

BLAST of MS002373 vs. ExPASy TrEMBL
Match: A0A1R3G2K4 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_29278 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 4.6e-09
Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 0


Query: 5  GGAEIMVAGSCVFDGILSISMEDFLIERRPYHRNCGCKLHIKNGSCPHPPFKTSSLSFMR 64
          G AE++  G  +F+G  SI M+D LIERRPYHRNCGC LH   G C     +T +LSF +
Sbjct: 4  GAAEMIFQG--IFEG--SIVMQDSLIERRPYHRNCGCALHKLKGDCSSACSRTGNLSFPK 63

Query: 65 NQKWTKTTSLHIQSASKFSSLPS 88
           Q WT   SL + SAS FSS  S
Sbjct: 64 KQTWT-DCSLSL-SASIFSSQSS 80

[Close]

BLAST of MS002373 vs. ExPASy TrEMBL
Match: A0A2P5X4V6 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A06G055200v1 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 6.0e-09
Identity = 46/84 (54.76%), Postives = 57/84 (67.86%), Query Frame = 0


Query: 7  AEIMVAGSCVFDGILSISMEDFLIERRPYHRNCGCKLHIKNGSCPHPPF-KTSSLSFMRN 66
          AE+M+   CVF+G  SISM+D LIERRPYHRNC C LH   G C      +T+++SF + 
Sbjct: 3  AEMML--RCVFEG--SISMQDCLIERRPYHRNCQCALHNLKGVCLSTCISRTTNMSFPKK 62

Query: 67 QKWTKTTSLHIQSASKFSSLPSPL 90
          Q W   +SL + SASKFSS PSPL
Sbjct: 63 QTW-GDSSLSL-SASKFSS-PSPL 79

[Close]

BLAST of MS002373 vs. TAIR 10
Match: AT5G35110.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G46490.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.0e-05
Identity = 33/90 (36.67%), Postives = 46/90 (51.11%), Query Frame = 0


Query: 10 MVAGSC------VFDGILSISMEDFLIERRPYHRNCGCKLHIKN---GS---CPHPPFKT 69
          M AGS       +F+G   IS  D  I+RRPYH+NCGC LH ++   GS   C H   + 
Sbjct: 1  MAAGSMDGIFRNIFEG--CISSCDSSIQRRPYHKNCGCALHERSRGGGSATPCRHGRSEV 60

Query: 70 SSLSFMRNQKWTKTTSLHIQSASKFSSLPS 88
                R+     + +LH+ S+S  S+L S
Sbjct: 61 VMFPIQRSWSEGNSLALHLASSSSSSNLQS 88

[Close]

BLAST of MS002373 vs. TAIR 10
Match: AT2G46490.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G35110.1); Has 34 Blast hits to 34 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.0e-05
Identity = 33/93 (35.48%), Postives = 46/93 (49.46%), Query Frame = 0


Query: 16  VFDGILSISMEDFLIERRPYHRNCGCKLHI------KNGSCPHPPF-----KTSSLSFMR 75
           +F+G   IS  D  IERRPYH+NCGC LH       KN +   PP       + S+SF  
Sbjct: 10  IFEG--CISGLDSAIERRPYHKNCGCALHDKSSGAGKNQNQRRPPSCRRHGSSESISFPI 69

Query: 76  NQKWTK------------TTSLHIQSASKFSSL 86
            + W++            ++S ++QS S  SSL
Sbjct: 70  RRSWSEGNIMAMNLFSSSSSSSNLQSLSSSSSL 100

The following BLAST results are available for this feature:

BLAST of MS002373 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6587851.1	9.4e-17	60.00	hypothetical protein SDJN03_16416, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023531633.1	2.7e-16	58.82	uncharacterized protein LOC111793815 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_023531631.1	2.7e-16	58.82	uncharacterized protein LOC111793815 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
KAA0050036.1	4.1e-12	52.87	hypothetical protein E6C27_scaffold675G00110 [Cucumis melo var. makuwa] >TYK0364...	[more]
OMO52287.1	2.7e-11	53.01	hypothetical protein CCACVL1_29281 [Corchorus capsularis]	[more]

BLAST of MS002373 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002373 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U781	2.0e-12	52.87	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1R3G2J8	1.3e-11	53.01	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_29281 PE=4 ...	[more]
A0A0A0LZ02	1.6e-09	47.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G265640 PE=4 SV=1	[more]
A0A1R3G2K4	4.6e-09	51.81	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_29278 PE=4 ...	[more]
A0A2P5X4V6	6.0e-09	54.76	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A06G055200v1 PE...	[more]

BLAST of MS002373 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G35110.1	1.0e-05	36.67	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G46490.1	4.0e-05	35.48	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..100
None	No IPR available	PANTHER	PTHR35121:SF8	SUBFAMILY NOT NAMED	coord: 4..86
None	No IPR available	PANTHER	PTHR35121	HOMEODOMAIN PROTEIN 8, PUTATIVE-RELATED	coord: 4..86

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002373.1	MS002373.1	mRNA