MS002349 (gene) Bitter gourd (TR) v1

Overview


Name	MS002349
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	cytochrome c oxidase assembly factor 6
Location	scaffold30: 4313499 .. 4314033 (+)
RNA-Seq Expression	MS002349
Synteny	MS002349

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTCGAAGCTGACGCGTCCGGAGGCTTAGATGAAGTTCATAGCGATGTTCTTGCGGGTTCTAGGCAAGCTTGCTATAAGGTTCTTTCTCTCAATCACTCATTCTCTGCGGTTTCTGTTTGATTAAAATGCTAGAGTGTTAATGAATATGGCAATTTTATTCATCTGAACAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCCGCCGAGTGTAAAGCTTTGAGGGCCGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTAAATGCCGTTCCCCGATGACTGGAGATTTTAATACAATGTTGGCTCTTAGAATTTCTAGTCTTGTAGATTTTGATTTCTGGTGTTTGTGATTTGGTAGGTGAAGCATTTCGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTGTCACTTCCGCAGCCTTACACTTTTAAGCCCACTAGT

mRNA sequence

ATGGCTGTCGAAGCTGACGCGTCCGGAGGCTTAGATGAAGTTCATAGCGATGTTCTTGCGGGTTCTAGGCAAGCTTGCTATAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCCGCCGAGTGTAAAGCTTTGAGGGCCGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTCGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTGTCACTTCCGCAGCCTTACACTTTTAAGCCCACTAGT

Coding sequence (CDS)

ATGGCTGTCGAAGCTGACGCGTCCGGAGGCTTAGATGAAGTTCATAGCGATGTTCTTGCGGGTTCTAGGCAAGCTTGCTATAAGGCTCGCGATGCTTTTTATGCTTGTGTGGAGAAGGAATCGGACAAAAAGCCTACTGAAATTGCTTCTGTTGGCCTTATTTACCCCGCCGAGTGTAAAGCTTTGAGGGCCGAGTTTGTCAAACTTTGTAGGGCTTCTTGGGTGAAGCATTTCGATAGGAAGTTTTGTCAGAACAGTAGGGTTCAAAGACTCTTAGATGACAAAGATTCGAGGAGAGGTCCCTTGTCACTTCCGCAGCCTTACACTTTTAAGCCCACTAGT

Protein sequence

MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECKALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS

Homology

[Close]

BLAST of MS002349 vs. NCBI nr
Match: XP_022134674.1 (uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncharacterized protein LOC111006886 [Momordica charantia])

HSP 1 Score: 235.0 bits (598), Expect = 3.3e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 115
           ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of MS002349 vs. NCBI nr
Match: XP_038878579.1 (uncharacterized protein LOC120070767 [Benincasa hispida])

HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55
Identity = 110/114 (96.49%), Postives = 111/114 (97.37%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEADASGGLDEVHSDVLA SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 115
           ALRA FVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPT+
Sbjct: 61  ALRAYFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLILPQPYTFKPTN 114

[Close]

BLAST of MS002349 vs. NCBI nr
Match: XP_008443871.1 (PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_008443872.1 PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >KAA0035060.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa] >TYK03618.1 cytochrome c oxidase assembly factor 6 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 4.2e-53
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEAD+SGG DEVH+DVL+ SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 115
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL LPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of MS002349 vs. NCBI nr
Match: XP_022973432.1 (cytochrome c oxidase assembly factor 6 [Cucurbita maxima])

HSP 1 Score: 214.5 bits (545), Expect = 4.6e-52
Identity = 103/114 (90.35%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+E D SGG +EVH+DVLA  RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 115
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of MS002349 vs. NCBI nr
Match: XP_022926034.1 (cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypothetical protein SDJN03_16399, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035672.1 hypothetical protein SDJN02_02470 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213.4 bits (542), Expect = 1.0e-51
Identity = 103/114 (90.35%), Postives = 106/114 (92.98%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA E D SGG +EVH+DVLA  RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MAPETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 115
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of MS002349 vs. ExPASy TrEMBL
Match: A0A6J1BZF0 (uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006886 PE=4 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 1.6e-58
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 115
           ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS
Sbjct: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 114

[Close]

BLAST of MS002349 vs. ExPASy TrEMBL
Match: A0A1S3B9T5 (uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487365 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.0e-53
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEAD+SGG DEVH+DVL+ SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 115
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL LPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of MS002349 vs. ExPASy TrEMBL
Match: A0A5A7SVN2 (Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00450 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.0e-53
Identity = 104/114 (91.23%), Postives = 110/114 (96.49%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MAVEAD+SGG DEVH+DVL+ SRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAVEADSSGGSDEVHTDVLSESRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 115
           ALRA++VKLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL LPQPYTFKPT+
Sbjct: 61  ALRADYVKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of MS002349 vs. ExPASy TrEMBL
Match: A0A6J1I7I2 (cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC111471973 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.2e-52
Identity = 103/114 (90.35%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA+E D SGG +EVH+DVLA  RQACYKARDAFYACVEKESDKKPTEIASVGL+YPAECK
Sbjct: 1   MALETDPSGGSEEVHTDVLAEFRQACYKARDAFYACVEKESDKKPTEIASVGLLYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 115
           A RAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPL LPQPYTFKPTS
Sbjct: 61  ASRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLVLPQPYTFKPTS 114

[Close]

BLAST of MS002349 vs. ExPASy TrEMBL
Match: A0A0A0LTX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 5.0e-52
Identity = 101/114 (88.60%), Postives = 108/114 (94.74%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA EAD+SGG DEVH+DVL+ SRQACYKARDAFYAC+EKESDKKPTEIASVGLIYPAECK
Sbjct: 1   MAFEADSSGGSDEVHTDVLSESRQACYKARDAFYACMEKESDKKPTEIASVGLIYPAECK 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPTS 115
           ALRA++ KLCRASWVKHFDRKFCQNSRVQRLLDDKD RRGPL LPQPYTFKPT+
Sbjct: 61  ALRADYAKLCRASWVKHFDRKFCQNSRVQRLLDDKDLRRGPLILPQPYTFKPTN 114

[Close]

BLAST of MS002349 vs. TAIR 10
Match: AT5G58005.1 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-42
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA++  AS   ++VH DVL  +R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPT 114
             R +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+SLPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

[Close]

BLAST of MS002349 vs. TAIR 10
Match: AT5G58005.2 (Cytochrome c oxidase, subunit Vib family protein )

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-42
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 1   MAVEADASGGLDEVHSDVLAGSRQACYKARDAFYACVEKESDKKPTEIASVGLIYPAECK 60
           MA++  AS   ++VH DVL  +R ACYKARDAFYAC+EKES KKPTEIA+VGL+YP EC 
Sbjct: 1   MALDTYASSNPNDVHEDVLLKARDACYKARDAFYACLEKESGKKPTEIATVGLLYPKECS 60

Query: 61  ALRAEFVKLCRASWVKHFDRKFCQNSRVQRLLDDKDSRRGPLSLPQPYTFKPT 114
             R +FV  CR+SWVKHFDR++C+N RVQRLLDD D R+GP+SLPQPYTFKP+
Sbjct: 61  NSRTQFVNNCRSSWVKHFDREYCRNKRVQRLLDDGDERKGPMSLPQPYTFKPS 113

The following BLAST results are available for this feature:

BLAST of MS002349 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134674.1	3.3e-58	100.00	uncharacterized protein LOC111006886 [Momordica charantia] >XP_022134675.1 uncha...	[more]
XP_038878579.1	2.0e-55	96.49	uncharacterized protein LOC120070767 [Benincasa hispida]	[more]
XP_008443871.1	4.2e-53	91.23	PREDICTED: uncharacterized protein LOC103487365 isoform X1 [Cucumis melo] >XP_00...	[more]
XP_022973432.1	4.6e-52	90.35	cytochrome c oxidase assembly factor 6 [Cucurbita maxima]	[more]
XP_022926034.1	1.0e-51	90.35	cytochrome c oxidase assembly factor 6 [Cucurbita moschata] >KAG6587834.1 hypoth...	[more]

BLAST of MS002349 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS002349 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BZF0	1.6e-58	100.00	uncharacterized protein LOC111006886 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A1S3B9T5	2.0e-53	91.23	uncharacterized protein LOC103487365 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SVN2	2.0e-53	91.23	Cytochrome c oxidase assembly factor 6 isoform X3 OS=Cucumis melo var. makuwa OX...	[more]
A0A6J1I7I2	2.2e-52	90.35	cytochrome c oxidase assembly factor 6 OS=Cucurbita maxima OX=3661 GN=LOC1114719...	[more]
A0A0A0LTX1	5.0e-52	88.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269850 PE=4 SV=1	[more]

BLAST of MS002349 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58005.1	1.2e-42	68.14	Cytochrome c oxidase, subunit Vib family protein	[more]
AT5G58005.2	1.2e-42	68.14	Cytochrome c oxidase, subunit Vib family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003213	Cytochrome c oxidase, subunit VIb	PFAM	PF02297	COX6B	coord: 22..92 e-value: 1.7E-18 score: 66.6
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	GENE3D	1.10.10.140	Cytochrome c oxidase, subunit VIb	coord: 19..91 e-value: 4.3E-9 score: 38.2
IPR036549	Cytochrome c oxidase, subunit VIb superfamily	SUPERFAMILY	47694	Cytochrome c oxidase subunit h	coord: 23..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..114
None	No IPR available	PANTHER	PTHR47445:SF1	OS08G0441400 PROTEIN	coord: 1..112
None	No IPR available	PANTHER	PTHR47445	OS08G0441400 PROTEIN	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002349.1	MS002349.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0045277	respiratory chain complex IV