MS002204 (gene) Bitter gourd (TR) v1

Overview
NameMS002204
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionPhotosystem I assembly protein Ycf3
Locationscaffold30: 3207985 .. 3208173 (+)
RNA-Seq ExpressionMS002204
SyntenyMS002204
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCACTTACTCCCGGTAATTATATTGAAGCACAAAATTGGTTGAAGATCACAAGGCGTTTCAAA

mRNA sequence

TACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCACTTACTCCCGGTAATTATATTGAAGCACAAAATTGGTTGAAGATCACAAGGCGTTTCAAA

Coding sequence (CDS)

TACGGTTCTAAGGGAAGGAATTTACCTGCCTATTCCGACCGGGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAGCACTTACTCCCGGTAATTATATTGAAGCACAAAATTGGTTGAAGATCACAAGGCGTTTCAAA

Protein sequence

YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Homology
[Close]
BLAST of MS002204 vs. NCBI nr
Match: TKS04885.1 (ribosomal protein S4 [Populus alba])

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1   YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITR 60
           YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITR
Sbjct: 228 YGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITR 287

Query: 61  RFK 64
           RF+
Sbjct: 288 RFE 290

[Close]
BLAST of MS002204 vs. NCBI nr
Match: YP_009758243.1 (hypothetical chloroplast RF34 [Rubus amabilis] >YP_010142801.1 hypothetical chloroplast RF34 [Rubus sachalinensis] >QIN90022.1 hypothetical chloroplast RF34 [Rubus amabilis] >QQL03818.1 hypothetical chloroplast RF34 [Rubus sachalinensis])

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1   YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITR 60
           YGSKGRNLP YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITR
Sbjct: 112 YGSKGRNLPPYSDRGEQAVQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITR 171

Query: 61  RFK 64
           RF+
Sbjct: 172 RFE 174

[Close]
BLAST of MS002204 vs. NCBI nr
Match: ERN02875.1 (hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda] >KAF4397632.1 hypothetical protein G4B88_027372 [Cannabis sativa])

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITR 60
          YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPGNYIEAQNWLKITR
Sbjct: 8  YGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPGNYIEAQNWLKITR 67

Query: 61 RFK 64
          RF+
Sbjct: 68 RFE 70

[Close]
BLAST of MS002204 vs. NCBI nr
Match: KAG6735386.1 (hypothetical protein POTOM_062012 [Populus tomentosa])

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1   YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITR 60
           YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITR
Sbjct: 72  YGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITR 131

Query: 61  RFK 64
           RF+
Sbjct: 132 RFE 134

[Close]
BLAST of MS002204 vs. NCBI nr
Match: KAF3433879.1 (hypothetical protein FNV43_RR24982 [Rhamnella rubrinervis] >KAF3449778.1 hypothetical protein FNV43_RR05856 [Rhamnella rubrinervis])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITR 60
          YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKIT+
Sbjct: 8  YGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITK 67

Query: 61 RFK 64
          RF+
Sbjct: 68 RFE 70

[Close]
BLAST of MS002204 vs. ExPASy Swiss-Prot
Match: Q4VZH4 (Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.8e-23
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 14  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 64
           RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK
Sbjct: 120 RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 169

[Close]
BLAST of MS002204 vs. ExPASy Swiss-Prot
Match: Q49KZ7 (Photosystem I assembly protein Ycf3 OS=Eucalyptus globulus subsp. globulus OX=71271 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 14  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 64
           RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]
BLAST of MS002204 vs. ExPASy Swiss-Prot
Match: A0ZZ36 (Photosystem I assembly protein Ycf3 OS=Gossypium barbadense OX=3634 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 14  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 64
           RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]
BLAST of MS002204 vs. ExPASy Swiss-Prot
Match: Q2L906 (Photosystem I assembly protein Ycf3 OS=Gossypium hirsutum OX=3635 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 14  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 64
           RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]
BLAST of MS002204 vs. ExPASy Swiss-Prot
Match: Q9MTP0 (Photosystem I assembly protein Ycf3 OS=Oenothera elata subsp. hookeri OX=85636 GN=ycf3 PE=3 SV=3)

HSP 1 Score: 104.0 bits (258), Expect = 6.4e-22
Identity = 48/50 (96.00%), Postives = 50/50 (100.00%), Query Frame = 0 

Query: 14  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 64
           RGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITRRF+
Sbjct: 119 RGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRRFE 168

[Close]
BLAST of MS002204 vs. ExPASy TrEMBL
Match: A0A6G8QRP2 (Photosystem I assembly protein Ycf3 OS=Rubus amabilis OX=616954 GN=ycf3 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1   YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITR 60
           YGSKGRNLP YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITR
Sbjct: 112 YGSKGRNLPPYSDRGEQAVQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITR 171

Query: 61  RFK 64
           RF+
Sbjct: 172 RFE 174

[Close]
BLAST of MS002204 vs. ExPASy TrEMBL
Match: W1P7C5 (Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00334p00015220 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITR 60
          YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPGNYIEAQNWLKITR
Sbjct: 8  YGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPGNYIEAQNWLKITR 67

Query: 61 RFK 64
          RF+
Sbjct: 68 RFE 70

[Close]
BLAST of MS002204 vs. ExPASy TrEMBL
Match: A0A7T7D536 (Hypothetical chloroplast RF34 OS=Rubus sachalinensis OX=59502 GN=ycf3 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 58/63 (92.06%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1   YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITR 60
           YGSKGRNLP YSDRGEQA++QGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITR
Sbjct: 112 YGSKGRNLPPYSDRGEQAVQQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITR 171

Query: 61  RFK 64
           RF+
Sbjct: 172 RFE 174

[Close]
BLAST of MS002204 vs. ExPASy TrEMBL
Match: A0A4U5Q996 (30S ribosomal protein S4, chloroplastic OS=Populus alba OX=43335 GN=rps4 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1   YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITR 60
           YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAIALTPGNYIEAQNWLKITR
Sbjct: 228 YGSKGRNLLAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITR 287

Query: 61  RFK 64
           RF+
Sbjct: 288 RFE 290

[Close]
BLAST of MS002204 vs. ExPASy TrEMBL
Match: A0A7J6HQR9 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027372 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.6e-26
Identity = 59/63 (93.65%), Postives = 62/63 (98.41%), Query Frame = 0 

Query: 1  YGSKGRNLPAYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITR 60
          YGSKGRNL AYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQA+ALTPGNYIEAQNWLKITR
Sbjct: 8  YGSKGRNLSAYSDRGEQAIRQGDSEIAEAWFDQAAEYWKQALALTPGNYIEAQNWLKITR 67

Query: 61 RFK 64
          RF+
Sbjct: 68 RFE 70

[Close]
BLAST of MS002204 vs. TAIR 10
Match: ATCG00360.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 9.4e-21
Identity = 44/50 (88.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 14  RGEQAIRQGDSEIAEAWFNQAAEYWKQAIALTPGNYIEAQNWLKITRRFK 64
           RGEQAI+QGDSE+AEAWF QAAEYWKQAI LTPGNYIEAQNWL ITRRF+
Sbjct: 77  RGEQAIQQGDSEMAEAWFAQAAEYWKQAITLTPGNYIEAQNWLTITRRFE 126

The following BLAST results are available for this feature:
BLAST of MS002204 vs. NCBI nr
Match NameE-valueIdentityDescription
TKS04885.15.4e-2695.24ribosomal protein S4 [Populus alba][more]
YP_009758243.15.4e-2692.06hypothetical chloroplast RF34 [Rubus amabilis] >YP_010142801.1 hypothetical chlo... [more]
ERN02875.15.4e-2693.65hypothetical protein AMTR_s00334p00015220 [Amborella trichopoda] >KAF4397632.1 h... [more]
KAG6735386.15.4e-2695.24hypothetical protein POTOM_062012 [Populus tomentosa][more]
KAF3433879.11.2e-2593.65hypothetical protein FNV43_RR24982 [Rhamnella rubrinervis] >KAF3449778.1 hypothe... [more]
BLAST of MS002204 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZH45.8e-23100.00Photosystem I assembly protein Ycf3 OS=Cucumis sativus OX=3659 GN=ycf3 PE=3 SV=1[more]
Q49KZ76.4e-2296.00Photosystem I assembly protein Ycf3 OS=Eucalyptus globulus subsp. globulus OX=71... [more]
A0ZZ366.4e-2296.00Photosystem I assembly protein Ycf3 OS=Gossypium barbadense OX=3634 GN=ycf3 PE=3... [more]
Q2L9066.4e-2296.00Photosystem I assembly protein Ycf3 OS=Gossypium hirsutum OX=3635 GN=ycf3 PE=3 S... [more]
Q9MTP06.4e-2296.00Photosystem I assembly protein Ycf3 OS=Oenothera elata subsp. hookeri OX=85636 G... [more]
BLAST of MS002204 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6G8QRP22.6e-2692.06Photosystem I assembly protein Ycf3 OS=Rubus amabilis OX=616954 GN=ycf3 PE=3 SV=... [more]
W1P7C52.6e-2693.65Uncharacterized protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00334p00015220... [more]
A0A7T7D5362.6e-2692.06Hypothetical chloroplast RF34 OS=Rubus sachalinensis OX=59502 GN=ycf3 PE=4 SV=1[more]
A0A4U5Q9962.6e-2695.2430S ribosomal protein S4, chloroplastic OS=Populus alba OX=43335 GN=rps4 PE=3 SV... [more]
A0A7J6HQR92.6e-2693.65Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_027372 PE=4 SV=1[more]
BLAST of MS002204 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00360.19.4e-2188.00Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR26312:SF178PHOTOSYSTEM I ASSEMBLY PROTEIN YCF3coord: 4..63
NoneNo IPR availablePANTHERPTHR26312TETRATRICOPEPTIDE REPEAT PROTEIN 5coord: 4..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS002204.1MS002204.1mRNA