MS002108 (gene) Bitter gourd (TR) v1

Overview


Name	MS002108
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	carbon catabolite repressor protein 4 homolog 3
Location	scaffold30: 2427632 .. 2429511 (-)
RNA-Seq Expression	MS002108
Synteny	MS002108

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAGCTTTAATGAAATTGATATTCCAGAAAAATTCAGTGTAGTTTCATACAACATATTGGCGGAAAGGAATGCATGGAAACACAGAGGTCTATATTCCAATGTTCCTTCATCATATCTGAAATGGAATTACCGAAAGAGAGTTANGTGCACTATCTTGCTGACTTACTATAACGAAACCTTAAACTTTTTCTTGATTGTCAAATACTTGTAGGAAGTGGACAAGTATTTTGATGTTTCAGTAATCATGGAGAAAGCCGGTTACATTGGGTCATACACGGTTGGTATTCATGTTGAGAATTTGATGTATTTCATTCCCCTAGGATGATTTGGTGGAAGTAATATGATATCCACATGATGAAATTATATTTTGCTCCATATTATGAACTTATGTGTAACGAATAGTACATGACTCTACATCAGATATTGACTGAAACATAGTTGAATCTAATCAGCTAAAATAGGGAAAAGCATACAATTTTTTGAGTGGTTTTTCCTCTTAGTTTCTAACCTTGAAGTTTACTGCTATTGACTTTAATTTGGGGACCTTTTGACTATTGTGTTAATGCTTTTCATCTTCTGGAAAAGTTGACTTAATTCAAGTAATTTCGACCTCCAATACTGTTGATTCACCGAGTGATTCATCATTTGGTCTGTTTAGTTATTTATTGTTTTTAATCAATAGATCCTTGTACTTTTGCAGCTTATTGGATATGATGCTAAAGAATTCTAATTTGAAATGGCAGAGACGCACTGGAGATGCTATTGACGGTTGTGCTATATTCTGGAAAGCTGACAAGTAGGAAGCTAAAGCTTTGCTTATATATGTTATATGGAACATCTTCAGGATATTTCTTTATAGACTTGTATAAATGCACTAACATGCTTTATTCACTTGGTAAGGTTTCGACTAATAGATGAAGAAAGCATCAAATTCAAGAGGTTCAATCTTCGTGACAATGTTGCTCAACTTTCTGTGCTAGAGGTAGAAATTCATTATCATCTGGCTGTAGGTTTGATCTGTCGTAATGAGGTCATGTGTGATGATTTTAAAGTTATCCACAAGCATCCGCATGCCCTACGAAATATTATTTATTAAGAAAAATTTAATCCATTTGATTTTGCATTTACCAATTTAAACTTGATCAGAAAGCTCACTTATGAAACTTGAGGTAGCATATAGTTTCAGTTTTGTTCTAATTTTCACCTGACATTTTCAGATTTAAATTTTTATTGGACCAACTTTCGAAACATAACTTTTCTATATGCAGGCAGATGTCCAAAGCTAAATCAAGAAAATTACTGATTGGTAACATCCATGTTCTTTACAACCCAAGCAGGGGGGATGTCAAATTAGGTCAAGTAAGTCCTATGCTAAATAGGAATAATATTAAATATTAACTGTCCTCCATCGTTATTCTTTATTCAAATGTTACTAGATATATTAAATGCATGTATTCAAGCGAAGATCATTCAGTCTGGTGTTTCCAGATTTGCTACCTCCGCAAGGCGATGAAATATTACTCTAAATGTTTACGTTCACAATTTATTTATGCCTTTCTTACTTCCTTCAAGACTTAAAGTACAGTGATTTGGTAATTATTTGTTATTAGAACCTAGTTAATTTGTTTTTCTTAATGACTTTGTATGTCTTAGCATAAAACAGAGAAGTTCATGAATCACGTGTTATGTCATTGTTGTATATGACAATGATAAATTAAAAATGAAAGACAATCTTATTCTTCATATTTTGAAACTAAACTGCAGATTCGTTATCTCTTATCGAGGGCAGAGATTCTTTCACAGAAATGGAGTAATCTTCCTTTTGTTCTTGCCGGGGATTTCAATAGTACTCCTGAGGTTTTATACCAAAATTATATT

mRNA sequence

TTTAGCTTTAATGAAATTGATATTCCAGAAAAATTCAGTGTAGTTTCATACAACATATTGGCGGAAAGGAATGCATGGAAACACAGAGGTCTATATTCCAATGTTCCTTCATCATATCTGAAATGGAATTACCGAAAGAGAGTTANGTGCACTATCTTGCTGACTTACTATAACGAAACCTTAAACTTTTTCTTGATTGTCAAATACTTCTTATTGGATATGATGCTAAAGAATTCTAATTTGAAATGGCAGAGACGCACTGGAGATGCTATTGACGGTTGTGCTATATTCTGGAAAGCTGACAAGTTTCGACTAATAGATGAAGAAAGCATCAAATTCAAGAGGTTCAATCTTCGTGACAATGTTGCTCAACTTTCTGTGCTAGAGGTAGAAATTCATTATCATCTGGCTATGTCCAAAGCTAAATCAAGAAAATTACTGATTGGTAACATCCATGTTCTTTACAACCCAAGCAGGGGGGATGTCAAATTAGGTCAAATTCGTTATCTCTTATCGAGGGCAGAGATTCTTTCACAGAAATGGAGTAATCTTCCTTTTGTTCTTGCCGGGGATTTCAATAGTACTCCTGAGGTTTTATACCAAAATTATATT

Coding sequence (CDS)

TTTAGCTTTAATGAAATTGATATTCCAGAAAAATTCAGTGTAGTTTCATACAACATATTGGCGGAAAGGAATGCATGGAAACACAGAGGTCTATATTCCAATGTTCCTTCATCATATCTGAAATGGAATTACCGAAAGAGAGTTANGTGCACTATCTTGCTGACTTACTATAACGAAACCTTAAACTTTTTCTTGATTGTCAAATACTTCTTATTGGATATGATGCTAAAGAATTCTAATTTGAAATGGCAGAGACGCACTGGAGATGCTATTGACGGTTGTGCTATATTCTGGAAAGCTGACAAGTTTCGACTAATAGATGAAGAAAGCATCAAATTCAAGAGGTTCAATCTTCGTGACAATGTTGCTCAACTTTCTGTGCTAGAGGTAGAAATTCATTATCATCTGGCTATGTCCAAAGCTAAATCAAGAAAATTACTGATTGGTAACATCCATGTTCTTTACAACCCAAGCAGGGGGGATGTCAAATTAGGTCAAATTCGTTATCTCTTATCGAGGGCAGAGATTCTTTCACAGAAATGGAGTAATCTTCCTTTTGTTCTTGCCGGGGATTTCAATAGTACTCCTGAGGTTTTATACCAAAATTATATT

Protein sequence

FSFNEIDIPEKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKYFLLDMMLKNSNLKWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSVLEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFVLAGDFNSTPEVLYQNYI

Homology

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BLAST of MS002108 vs. NCBI nr
Match: XP_022134919.1 (carbon catabolite repressor protein 4 homolog 3-like isoform X2 [Momordica charantia])

HSP 1 Score: 290.4 bits (742), Expect = 1.2e-74
Identity = 152/199 (76.38%), Postives = 165/199 (82.91%), Query Frame = 0


Query: 5   EIDIP----EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNET 64
           E+D P    EK SVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRV C  LL +  + 
Sbjct: 70  EVDQPSASEEKLSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVICEELLMWNPDI 129

Query: 65  LNFFLIVKYFLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNL 124
           +   ++ KYF + ++++ +     + RRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNL
Sbjct: 130 ICLQIMDKYFDVSVIMEKAGYIGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNL 189

Query: 125 RDNVAQLSVLEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS 184
           RDNVAQLSVLE        MSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS
Sbjct: 190 RDNVAQLSVLE--------MSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS 249

Query: 185 QKWSNLPFVLAGDFNSTPE 198
           QKWSNLPFVLAGDFNSTPE
Sbjct: 250 QKWSNLPFVLAGDFNSTPE 260

[Close]

BLAST of MS002108 vs. NCBI nr
Match: XP_038878224.1 (carbon catabolite repressor protein 4 homolog 3 isoform X3 [Benincasa hispida])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 143/190 (75.26%), Postives = 156/190 (82.11%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           EKF VVSYNILAERNAWKHRGLY NVPS YLKWN+RKRV C  LL +  + +    + KY
Sbjct: 79  EKFRVVSYNILAERNAWKHRGLYPNVPSPYLKWNHRKRVICEELLIWNPDIICLQEVDKY 138

Query: 70  FLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSV 129
           F +  +++ +     + RRTGDAIDGCAIFWKADKFRLIDEESIKFK FNLRDNVAQLSV
Sbjct: 139 FDVSEIMEKAGYVGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFKMFNLRDNVAQLSV 198

Query: 130 LEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFV 189
           LE        MSKAKSR+LLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS+KWSNLPFV
Sbjct: 199 LE--------MSKAKSRRLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSEKWSNLPFV 258

Query: 190 LAGDFNSTPE 198
           LAGDFNSTPE
Sbjct: 259 LAGDFNSTPE 260

[Close]

BLAST of MS002108 vs. NCBI nr
Match: XP_038878222.1 (carbon catabolite repressor protein 4 homolog 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 143/190 (75.26%), Postives = 156/190 (82.11%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           EKF VVSYNILAERNAWKHRGLY NVPS YLKWN+RKRV C  LL +  + +    + KY
Sbjct: 79  EKFRVVSYNILAERNAWKHRGLYPNVPSPYLKWNHRKRVICEELLIWNPDIICLQEVDKY 138

Query: 70  FLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSV 129
           F +  +++ +     + RRTGDAIDGCAIFWKADKFRLIDEESIKFK FNLRDNVAQLSV
Sbjct: 139 FDVSEIMEKAGYVGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFKMFNLRDNVAQLSV 198

Query: 130 LEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFV 189
           LE        MSKAKSR+LLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS+KWSNLPFV
Sbjct: 199 LE--------MSKAKSRRLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSEKWSNLPFV 258

Query: 190 LAGDFNSTPE 198
           LAGDFNSTPE
Sbjct: 259 LAGDFNSTPE 260

[Close]

BLAST of MS002108 vs. NCBI nr
Match: XP_038878223.1 (carbon catabolite repressor protein 4 homolog 3 isoform X2 [Benincasa hispida])

HSP 1 Score: 276.6 bits (706), Expect = 1.8e-70
Identity = 143/190 (75.26%), Postives = 156/190 (82.11%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           EKF VVSYNILAERNAWKHRGLY NVPS YLKWN+RKRV C  LL +  + +    + KY
Sbjct: 79  EKFRVVSYNILAERNAWKHRGLYPNVPSPYLKWNHRKRVICEELLIWNPDIICLQEVDKY 138

Query: 70  FLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSV 129
           F +  +++ +     + RRTGDAIDGCAIFWKADKFRLIDEESIKFK FNLRDNVAQLSV
Sbjct: 139 FDVSEIMEKAGYVGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFKMFNLRDNVAQLSV 198

Query: 130 LEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFV 189
           LE        MSKAKSR+LLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS+KWSNLPFV
Sbjct: 199 LE--------MSKAKSRRLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSEKWSNLPFV 258

Query: 190 LAGDFNSTPE 198
           LAGDFNSTPE
Sbjct: 259 LAGDFNSTPE 260

[Close]

BLAST of MS002108 vs. NCBI nr
Match: XP_004138235.1 (carbon catabolite repressor protein 4 homolog 3 [Cucumis sativus] >KGN63806.1 hypothetical protein Csa_013564 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 2.3e-70
Identity = 142/197 (72.08%), Postives = 158/197 (80.20%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           EKFSVVSYNILAERN WKHRGLY NVPS YLKWN+RKRV C  LL +  + +    + KY
Sbjct: 82  EKFSVVSYNILAERNTWKHRGLYPNVPSPYLKWNHRKRVICEELLMWNPDIICLQEVDKY 141

Query: 70  FLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSV 129
           F +  +++ +     + RRTGDAIDGCAIFWKADKFRLIDEESIKFK FNLRDNVAQLSV
Sbjct: 142 FDVSEIMEKAGYVGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFKMFNLRDNVAQLSV 201

Query: 130 LEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFV 189
           LE        MSKAKSR+LLIGNIHVLYNPSRGDVKLGQ+RYLLSRAEILS+KW NLPFV
Sbjct: 202 LE--------MSKAKSRRLLIGNIHVLYNPSRGDVKLGQLRYLLSRAEILSKKWRNLPFV 261

Query: 190 LAGDFNSTPEVLYQNYI 205
           LAGDFNSTPE    N++
Sbjct: 262 LAGDFNSTPESAIYNFL 270

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BLAST of MS002108 vs. ExPASy Swiss-Prot
Match: Q9LS39 (Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana OX=3702 GN=CCR4-3 PE=2 SV=2)

HSP 1 Score: 206.5 bits (524), Expect = 3.0e-52
Identity = 101/197 (51.27%), Postives = 141/197 (71.57%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           E+F+VVSYNIL + N+  HR LYSNV   YLKW YRKR+ C  L+    + ++   + KY
Sbjct: 107 ERFTVVSYNILGDGNSSYHRELYSNVSVPYLKWGYRKRLICEELIRLNPDIISMQEVDKY 166

Query: 70  FLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSV 129
           F L  M++ +     ++RRTGD +DGCA+FWKAD+F +++ E+I+F +F +RDNVAQL+V
Sbjct: 167 FDLFSMMEKAGYAGSYKRRTGDNVDGCAMFWKADRFGVLERENIEFSQFGMRDNVAQLAV 226

Query: 130 LEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFV 189
           LE+           KSRK+L+GNIHVLYNP++GDVKLGQ+R L S+A +LS+KW ++P V
Sbjct: 227 LELR-------KSNKSRKILLGNIHVLYNPNQGDVKLGQVRSLCSKAHLLSKKWGDIPIV 286

Query: 190 LAGDFNSTPEVLYQNYI 205
           L GDFNSTP+    N++
Sbjct: 287 LCGDFNSTPKSPLYNFL 296

[Close]

BLAST of MS002108 vs. ExPASy Swiss-Prot
Match: Q0WKY2 (Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana OX=3702 GN=CCR4-5 PE=2 SV=2)

HSP 1 Score: 175.6 bits (444), Expect = 5.6e-43
Identity = 91/211 (43.13%), Postives = 132/211 (62.56%), Query Frame = 0


Query: 1   FSFNEID-IPEKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNE 60
           FS N  + + +K  +VSYN+L   NA  H  LY NVP  +L+W+ RK + C  +  Y   
Sbjct: 88  FSANNFENLADKLVLVSYNLLGVDNASNHMDLYYNVPRKHLEWSRRKHLICKEISRYNAS 147

Query: 61  TLNFFLIVKYFLLDMMLKNSNLK--WQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFN 120
            L    + ++  LD++LKN   +   + RTG+A DGCAIFWK + F L+D + I+F +F 
Sbjct: 148 ILCLQEVDRFDDLDVLLKNRGFRGVHKSRTGEASDGCAIFWKENLFELLDHQHIEFDKFG 207

Query: 121 LRDNVAQLSVLEVEIH----YHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSR 180
           +R+NVAQL VLE+         L +  +  R+L++GNIHVL+NP RGD+KLGQ+R  L +
Sbjct: 208 MRNNVAQLCVLEMNCEEDPKSKLRVRSSDPRRLVVGNIHVLFNPKRGDIKLGQVRLFLEK 267

Query: 181 AEILSQKWSNLPFVLAGDFNSTPEVLYQNYI 205
           A  LSQ+W N+P  +AGD NSTP+    ++I
Sbjct: 268 AYKLSQEWGNIPVAIAGDLNSTPQSAIYDFI 298

[Close]

BLAST of MS002108 vs. ExPASy Swiss-Prot
Match: Q8VYU4 (Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana OX=3702 GN=CCR4-6 PE=2 SV=2)

HSP 1 Score: 162.5 bits (410), Expect = 4.9e-39
Identity = 89/205 (43.41%), Postives = 127/205 (61.95%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKH-RGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVK 69
           EKF V+SYNILA+  A  H R LY ++P + L W +RK      L  +  + +    + K
Sbjct: 181 EKFVVLSYNILADYLANDHWRSLYFHIPRNMLSWGWRKSKLVFELSLWSADIMCLQEVDK 240

Query: 70  YFLLDMMLKNSNLK--WQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLS 129
           +  L+  +K+      W+ RTG+A+DGCAIFW++++F+L+ EESI+F +  LRDNVAQ+ 
Sbjct: 241 FQDLEEEMKHRGYSAIWKMRTGNAVDGCAIFWRSNRFKLVHEESIQFNQLGLRDNVAQIC 300

Query: 130 VLEVEIHYHL-------AMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQ 189
           VLE  +  H          S A S +++I NIHVL+NP RGD KLGQ+R LL +A  +S+
Sbjct: 301 VLETLLTSHTKENETPPPESSAGSHRVVICNIHVLFNPKRGDFKLGQVRTLLDKAHAVSK 360

Query: 190 KWSNLPFVLAGDFNSTPEVLYQNYI 205
            W + P VL GDFN TP+    N+I
Sbjct: 361 LWDDAPIVLCGDFNCTPKSPLYNFI 385

[Close]

BLAST of MS002108 vs. ExPASy Swiss-Prot
Match: Q8VCU0 (Protein angel homolog 1 OS=Mus musculus OX=10090 GN=Angel1 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-16
Identity = 66/214 (30.84%), Postives = 103/214 (48.13%), Query Frame = 0


Query: 11  KFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYR------------KRVXC--TILLTY 70
           +F+++SYNILA+    +   LY +     L WNYR              + C   +   +
Sbjct: 241 QFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDH 300

Query: 71  YNETLNFFLIVKYFLLDMMLKNSNLKWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRF 130
           Y E L   L +  F            ++RRTG   DGCA+ +K  +FRL+    +++ R 
Sbjct: 301 YWEQLEPSLRMMGF---------TCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRP 360

Query: 131 NL----RDNVAQLSVLEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLS 190
            L    RDNV  + +L+  +     + +     L + N HVLYNP RGDVKL Q+  LL+
Sbjct: 361 GLELLNRDNVGLVLLLQPLVPE--GLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLA 420

Query: 191 RAEILSQ--KWSNLPFVLAGDFNSTPEVLYQNYI 205
             + +++    S+ P +L GD NS P+    N+I
Sbjct: 421 EVDKVARLSDGSHCPIILCGDLNSVPDSPLYNFI 443

[Close]

BLAST of MS002108 vs. ExPASy Swiss-Prot
Match: B2RYM0 (Protein angel homolog 1 OS=Rattus norvegicus OX=10116 GN=Angel1 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-16
Identity = 66/214 (30.84%), Postives = 103/214 (48.13%), Query Frame = 0


Query: 11  KFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYR------------KRVXC--TILLTY 70
           +F+++SYNILA+    +   LY +     L WNYR              + C   +   +
Sbjct: 241 QFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDH 300

Query: 71  YNETLNFFLIVKYFLLDMMLKNSNLKWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRF 130
           Y E L   L +  F            ++RRTG   DGCA+ +K  +FRL+    +++ R 
Sbjct: 301 YWEQLEPSLRMMGF---------TCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRP 360

Query: 131 NL----RDNVAQLSVLEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLS 190
            L    RDNV  + +L+  +     + +     L + N HVLYNP RGDVKL Q+  LL+
Sbjct: 361 GLELLNRDNVGLVLLLQPLVPE--GLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLA 420

Query: 191 RAEILSQ--KWSNLPFVLAGDFNSTPEVLYQNYI 205
             + +++    S+ P +L GD NS P+    N+I
Sbjct: 421 EVDKVARLSDGSHCPIILCGDLNSVPDSPLYNFI 443

[Close]

BLAST of MS002108 vs. ExPASy TrEMBL
Match: A0A6J1C033 (carbon catabolite repressor protein 4 homolog 3-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111007054 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 5.7e-75
Identity = 152/199 (76.38%), Postives = 165/199 (82.91%), Query Frame = 0


Query: 5   EIDIP----EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNET 64
           E+D P    EK SVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRV C  LL +  + 
Sbjct: 70  EVDQPSASEEKLSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVICEELLMWNPDI 129

Query: 65  LNFFLIVKYFLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNL 124
           +   ++ KYF + ++++ +     + RRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNL
Sbjct: 130 ICLQIMDKYFDVSVIMEKAGYIGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNL 189

Query: 125 RDNVAQLSVLEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS 184
           RDNVAQLSVLE        MSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS
Sbjct: 190 RDNVAQLSVLE--------MSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS 249

Query: 185 QKWSNLPFVLAGDFNSTPE 198
           QKWSNLPFVLAGDFNSTPE
Sbjct: 250 QKWSNLPFVLAGDFNSTPE 260

[Close]

BLAST of MS002108 vs. ExPASy TrEMBL
Match: A0A0A0LUV0 (Endo/exonuclease/phosphatase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G021960 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.1e-70
Identity = 142/197 (72.08%), Postives = 158/197 (80.20%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           EKFSVVSYNILAERN WKHRGLY NVPS YLKWN+RKRV C  LL +  + +    + KY
Sbjct: 82  EKFSVVSYNILAERNTWKHRGLYPNVPSPYLKWNHRKRVICEELLMWNPDIICLQEVDKY 141

Query: 70  FLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSV 129
           F +  +++ +     + RRTGDAIDGCAIFWKADKFRLIDEESIKFK FNLRDNVAQLSV
Sbjct: 142 FDVSEIMEKAGYVGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFKMFNLRDNVAQLSV 201

Query: 130 LEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFV 189
           LE        MSKAKSR+LLIGNIHVLYNPSRGDVKLGQ+RYLLSRAEILS+KW NLPFV
Sbjct: 202 LE--------MSKAKSRRLLIGNIHVLYNPSRGDVKLGQLRYLLSRAEILSKKWRNLPFV 261

Query: 190 LAGDFNSTPEVLYQNYI 205
           LAGDFNSTPE    N++
Sbjct: 262 LAGDFNSTPESAIYNFL 270

[Close]

BLAST of MS002108 vs. ExPASy TrEMBL
Match: A0A1S4DZP0 (carbon catabolite repressor protein 4 homolog 3 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103494114 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.6e-69
Identity = 141/190 (74.21%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           EKFSVVSYNILAERN WKHRGLY NVPS YLKWN+RKRV C  LL +  + +    + KY
Sbjct: 81  EKFSVVSYNILAERNTWKHRGLYPNVPSPYLKWNHRKRVICEELLMWNPDIICLQEVDKY 140

Query: 70  FLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSV 129
           F +  +++ +     + RRTGDAIDGCAIFWKADKFRLIDEESIKFK FNLRDNVAQLSV
Sbjct: 141 FDVSEIMEKAGYVGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFKMFNLRDNVAQLSV 200

Query: 130 LEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFV 189
           LE        M KA SR+LLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS+KWSNLPFV
Sbjct: 201 LE--------MFKANSRRLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSKKWSNLPFV 260

Query: 190 LAGDFNSTPE 198
           LAGDFNSTPE
Sbjct: 261 LAGDFNSTPE 262

[Close]

BLAST of MS002108 vs. ExPASy TrEMBL
Match: A0A5D3DYJ1 (Carbon catabolite repressor protein 4-like protein 3 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold629G00330 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.6e-69
Identity = 141/190 (74.21%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           EKFSVVSYNILAERN WKHRGLY NVPS YLKWN+RKRV C  LL +  + +    + KY
Sbjct: 81  EKFSVVSYNILAERNTWKHRGLYPNVPSPYLKWNHRKRVICEELLMWNPDIICLQEVDKY 140

Query: 70  FLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSV 129
           F +  +++ +     + RRTGDAIDGCAIFWKADKFRLIDEESIKFK FNLRDNVAQLSV
Sbjct: 141 FDVSEIMEKAGYVGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFKMFNLRDNVAQLSV 200

Query: 130 LEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFV 189
           LE        M KA SR+LLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS+KWSNLPFV
Sbjct: 201 LE--------MFKANSRRLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSKKWSNLPFV 260

Query: 190 LAGDFNSTPE 198
           LAGDFNSTPE
Sbjct: 261 LAGDFNSTPE 262

[Close]

BLAST of MS002108 vs. ExPASy TrEMBL
Match: A0A1S3BVJ0 (carbon catabolite repressor protein 4 homolog 3 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103494114 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.6e-69
Identity = 141/190 (74.21%), Postives = 154/190 (81.05%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           EKFSVVSYNILAERN WKHRGLY NVPS YLKWN+RKRV C  LL +  + +    + KY
Sbjct: 81  EKFSVVSYNILAERNTWKHRGLYPNVPSPYLKWNHRKRVICEELLMWNPDIICLQEVDKY 140

Query: 70  FLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSV 129
           F +  +++ +     + RRTGDAIDGCAIFWKADKFRLIDEESIKFK FNLRDNVAQLSV
Sbjct: 141 FDVSEIMEKAGYVGSYTRRTGDAIDGCAIFWKADKFRLIDEESIKFKMFNLRDNVAQLSV 200

Query: 130 LEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFV 189
           LE        M KA SR+LLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILS+KWSNLPFV
Sbjct: 201 LE--------MFKANSRRLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSKKWSNLPFV 260

Query: 190 LAGDFNSTPE 198
           LAGDFNSTPE
Sbjct: 261 LAGDFNSTPE 262

[Close]

BLAST of MS002108 vs. TAIR 10
Match: AT3G18500.2 (DNAse I-like superfamily protein )

HSP 1 Score: 206.5 bits (524), Expect = 2.1e-53
Identity = 101/197 (51.27%), Postives = 141/197 (71.57%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           E+F+VVSYNIL + N+  HR LYSNV   YLKW YRKR+ C  L+    + ++   + KY
Sbjct: 107 ERFTVVSYNILGDGNSSYHRELYSNVSVPYLKWGYRKRLICEELIRLNPDIISMQEVDKY 166

Query: 70  FLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSV 129
           F L  M++ +     ++RRTGD +DGCA+FWKAD+F +++ E+I+F +F +RDNVAQL+V
Sbjct: 167 FDLFSMMEKAGYAGSYKRRTGDNVDGCAMFWKADRFGVLERENIEFSQFGMRDNVAQLAV 226

Query: 130 LEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFV 189
           LE+           KSRK+L+GNIHVLYNP++GDVKLGQ+R L S+A +LS+KW ++P V
Sbjct: 227 LELR-------KSNKSRKILLGNIHVLYNPNQGDVKLGQVRSLCSKAHLLSKKWGDIPIV 286

Query: 190 LAGDFNSTPEVLYQNYI 205
           L GDFNSTP+    N++
Sbjct: 287 LCGDFNSTPKSPLYNFL 296

[Close]

BLAST of MS002108 vs. TAIR 10
Match: AT3G18500.3 (DNAse I-like superfamily protein )

HSP 1 Score: 206.5 bits (524), Expect = 2.1e-53
Identity = 101/197 (51.27%), Postives = 141/197 (71.57%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           E+F+VVSYNIL + N+  HR LYSNV   YLKW YRKR+ C  L+    + ++   + KY
Sbjct: 107 ERFTVVSYNILGDGNSSYHRELYSNVSVPYLKWGYRKRLICEELIRLNPDIISMQEVDKY 166

Query: 70  FLLDMMLKNSNL--KWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSV 129
           F L  M++ +     ++RRTGD +DGCA+FWKAD+F +++ E+I+F +F +RDNVAQL+V
Sbjct: 167 FDLFSMMEKAGYAGSYKRRTGDNVDGCAMFWKADRFGVLERENIEFSQFGMRDNVAQLAV 226

Query: 130 LEVEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFV 189
           LE+           KSRK+L+GNIHVLYNP++GDVKLGQ+R L S+A +LS+KW ++P V
Sbjct: 227 LELR-------KSNKSRKILLGNIHVLYNPNQGDVKLGQVRSLCSKAHLLSKKWGDIPIV 286

Query: 190 LAGDFNSTPEVLYQNYI 205
           L GDFNSTP+    N++
Sbjct: 287 LCGDFNSTPKSPLYNFL 296

[Close]

BLAST of MS002108 vs. TAIR 10
Match: AT3G18500.1 (DNAse I-like superfamily protein )

HSP 1 Score: 197.2 bits (500), Expect = 1.3e-50
Identity = 98/195 (50.26%), Postives = 130/195 (66.67%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVKY 69
           E+F+VVSYNIL + N+  HR LYSNV   YLKW YRKR+ C  L+               
Sbjct: 107 ERFTVVSYNILGDGNSSYHRELYSNVSVPYLKWGYRKRLICEELI--------------- 166

Query: 70  FLLDMMLKNSNLKWQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLSVLE 129
                 L    +  QRRTGD +DGCA+FWKAD+F +++ E+I+F +F +RDNVAQL+VLE
Sbjct: 167 -----RLNPDIISMQRRTGDNVDGCAMFWKADRFGVLERENIEFSQFGMRDNVAQLAVLE 226

Query: 130 VEIHYHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQKWSNLPFVLA 189
           +           KSRK+L+GNIHVLYNP++GDVKLGQ+R L S+A +LS+KW ++P VL 
Sbjct: 227 LR-------KSNKSRKILLGNIHVLYNPNQGDVKLGQVRSLCSKAHLLSKKWGDIPIVLC 274

Query: 190 GDFNSTPEVLYQNYI 205
           GDFNSTP+    N++
Sbjct: 287 GDFNSTPKSPLYNFL 274

[Close]

BLAST of MS002108 vs. TAIR 10
Match: AT1G73875.1 (DNAse I-like superfamily protein )

HSP 1 Score: 175.6 bits (444), Expect = 4.0e-44
Identity = 91/211 (43.13%), Postives = 132/211 (62.56%), Query Frame = 0


Query: 1   FSFNEID-IPEKFSVVSYNILAERNAWKHRGLYSNVPSSYLKWNYRKRVXCTILLTYYNE 60
           FS N  + + +K  +VSYN+L   NA  H  LY NVP  +L+W+ RK + C  +  Y   
Sbjct: 88  FSANNFENLADKLVLVSYNLLGVDNASNHMDLYYNVPRKHLEWSRRKHLICKEISRYNAS 147

Query: 61  TLNFFLIVKYFLLDMMLKNSNLK--WQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFN 120
            L    + ++  LD++LKN   +   + RTG+A DGCAIFWK + F L+D + I+F +F 
Sbjct: 148 ILCLQEVDRFDDLDVLLKNRGFRGVHKSRTGEASDGCAIFWKENLFELLDHQHIEFDKFG 207

Query: 121 LRDNVAQLSVLEVEIH----YHLAMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSR 180
           +R+NVAQL VLE+         L +  +  R+L++GNIHVL+NP RGD+KLGQ+R  L +
Sbjct: 208 MRNNVAQLCVLEMNCEEDPKSKLRVRSSDPRRLVVGNIHVLFNPKRGDIKLGQVRLFLEK 267

Query: 181 AEILSQKWSNLPFVLAGDFNSTPEVLYQNYI 205
           A  LSQ+W N+P  +AGD NSTP+    ++I
Sbjct: 268 AYKLSQEWGNIPVAIAGDLNSTPQSAIYDFI 298

[Close]

BLAST of MS002108 vs. TAIR 10
Match: AT5G11350.1 (DNAse I-like superfamily protein )

HSP 1 Score: 162.5 bits (410), Expect = 3.5e-40
Identity = 89/205 (43.41%), Postives = 127/205 (61.95%), Query Frame = 0


Query: 10  EKFSVVSYNILAERNAWKH-RGLYSNVPSSYLKWNYRKRVXCTILLTYYNETLNFFLIVK 69
           EKF V+SYNILA+  A  H R LY ++P + L W +RK      L  +  + +    + K
Sbjct: 181 EKFVVLSYNILADYLANDHWRSLYFHIPRNMLSWGWRKSKLVFELSLWSADIMCLQEVDK 240

Query: 70  YFLLDMMLKNSNLK--WQRRTGDAIDGCAIFWKADKFRLIDEESIKFKRFNLRDNVAQLS 129
           +  L+  +K+      W+ RTG+A+DGCAIFW++++F+L+ EESI+F +  LRDNVAQ+ 
Sbjct: 241 FQDLEEEMKHRGYSAIWKMRTGNAVDGCAIFWRSNRFKLVHEESIQFNQLGLRDNVAQIC 300

Query: 130 VLEVEIHYHL-------AMSKAKSRKLLIGNIHVLYNPSRGDVKLGQIRYLLSRAEILSQ 189
           VLE  +  H          S A S +++I NIHVL+NP RGD KLGQ+R LL +A  +S+
Sbjct: 301 VLETLLTSHTKENETPPPESSAGSHRVVICNIHVLFNPKRGDFKLGQVRTLLDKAHAVSK 360

Query: 190 KWSNLPFVLAGDFNSTPEVLYQNYI 205
            W + P VL GDFN TP+    N+I
Sbjct: 361 LWDDAPIVLCGDFNCTPKSPLYNFI 385

The following BLAST results are available for this feature:

BLAST of MS002108 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134919.1	1.2e-74	76.38	carbon catabolite repressor protein 4 homolog 3-like isoform X2 [Momordica chara...	[more]
XP_038878224.1	1.8e-70	75.26	carbon catabolite repressor protein 4 homolog 3 isoform X3 [Benincasa hispida]	[more]
XP_038878222.1	1.8e-70	75.26	carbon catabolite repressor protein 4 homolog 3 isoform X1 [Benincasa hispida]	[more]
XP_038878223.1	1.8e-70	75.26	carbon catabolite repressor protein 4 homolog 3 isoform X2 [Benincasa hispida]	[more]
XP_004138235.1	2.3e-70	72.08	carbon catabolite repressor protein 4 homolog 3 [Cucumis sativus] >KGN63806.1 hy...	[more]

BLAST of MS002108 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS39	3.0e-52	51.27	Carbon catabolite repressor protein 4 homolog 3 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q0WKY2	5.6e-43	43.13	Carbon catabolite repressor protein 4 homolog 5 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8VYU4	4.9e-39	43.41	Carbon catabolite repressor protein 4 homolog 6 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q8VCU0	1.2e-16	30.84	Protein angel homolog 1 OS=Mus musculus OX=10090 GN=Angel1 PE=1 SV=2	[more]
B2RYM0	1.2e-16	30.84	Protein angel homolog 1 OS=Rattus norvegicus OX=10116 GN=Angel1 PE=1 SV=2	[more]

BLAST of MS002108 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C033	5.7e-75	76.38	carbon catabolite repressor protein 4 homolog 3-like isoform X2 OS=Momordica cha...	[more]
A0A0A0LUV0	1.1e-70	72.08	Endo/exonuclease/phosphatase domain-containing protein OS=Cucumis sativus OX=365...	[more]
A0A1S4DZP0	1.6e-69	74.21	carbon catabolite repressor protein 4 homolog 3 isoform X1 OS=Cucumis melo OX=36...	[more]
A0A5D3DYJ1	1.6e-69	74.21	Carbon catabolite repressor protein 4-like protein 3 isoform X1 OS=Cucumis melo ...	[more]
A0A1S3BVJ0	1.6e-69	74.21	carbon catabolite repressor protein 4 homolog 3 isoform X3 OS=Cucumis melo OX=36...	[more]

BLAST of MS002108 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18500.2	2.1e-53	51.27	DNAse I-like superfamily protein	[more]
AT3G18500.3	2.1e-53	51.27	DNAse I-like superfamily protein	[more]
AT3G18500.1	1.3e-50	50.26	DNAse I-like superfamily protein	[more]
AT1G73875.1	4.0e-44	43.13	DNAse I-like superfamily protein	[more]
AT5G11350.1	3.5e-40	43.41	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	GENE3D	3.60.10.10	Endonuclease/exonuclease/phosphatase	coord: 4..202 e-value: 5.9E-43 score: 149.2
IPR036691	Endonuclease/exonuclease/phosphatase superfamily	SUPERFAMILY	56219	DNase I-like	coord: 11..195
IPR005135	Endonuclease/exonuclease/phosphatase	PFAM	PF03372	Exo_endo_phos	coord: 80..195 e-value: 2.4E-6 score: 27.3
None	No IPR available	PANTHER	PTHR12121	CARBON CATABOLITE REPRESSOR PROTEIN 4	coord: 9..200
None	No IPR available	PANTHER	PTHR12121:SF82	CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 3	coord: 9..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS002108.1	MS002108.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity