Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGTAGGCCGGAGGAAGAAGCAGTAGCAGCAGGCAACGAAATTGAAACTGGAGACGATGATCTGAACTCTGCGGCGTCATCAGGGAACCGCTGGGCTCAGGGCGAACGAGAGTCGCTAATGGTAGTCGCAACGTTCGTGGCGGCGGCCGCTTTCCAAGCCGGAATCAACCCTCCCGGCGGCGTCTGGCAAGACGACGGCGACCCCAGATACGAGGCCGGCAAGTCCATCATGGCCGCCAAAAACGAATCTCTGTACGTCACTTTCATCGTCGGCGCAACGCTGTGCCTGGCGGCTGCGCTGACGCAACTTCTGATGTTGCTCAACGATTTCACGAAAAAGGCCCAACTCTCGGCTTCCAGGTACTTTCTCTACTTCACCATGGGCACCGCAATCACCGGCATCGCTTTGGCTTATGGGTCGTCGGTTAGAGCTTTGACGCCGCCGCCGCTCTTGACGCAGGTCCTCTCTGTCCTCGGGGTTAATCTTCTTGTCAGTCTTCTCGTACTCTTAATTTCATTCTACTTTCAGACGAAG
mRNA sequence
ATGTCAAGTAGGCCGGAGGAAGAAGCAGTAGCAGCAGGCAACGAAATTGAAACTGGAGACGATGATCTGAACTCTGCGGCGTCATCAGGGAACCGCTGGGCTCAGGGCGAACGAGAGTCGCTAATGGTAGTCGCAACGTTCGTGGCGGCGGCCGCTTTCCAAGCCGGAATCAACCCTCCCGGCGGCGTCTGGCAAGACGACGGCGACCCCAGATACGAGGCCGGCAAGTCCATCATGGCCGCCAAAAACGAATCTCTGTACGTCACTTTCATCGTCGGCGCAACGCTGTGCCTGGCGGCTGCGCTGACGCAACTTCTGATGTTGCTCAACGATTTCACGAAAAAGGCCCAACTCTCGGCTTCCAGGTACTTTCTCTACTTCACCATGGGCACCGCAATCACCGGCATCGCTTTGGCTTATGGGTCGTCGGTTAGAGCTTTGACGCCGCCGCCGCTCTTGACGCAGGTCCTCTCTGTCCTCGGGGTTAATCTTCTTGTCAGTCTTCTCGTACTCTTAATTTCATTCTACTTTCAGACGAAG
Coding sequence (CDS)
ATGTCAAGTAGGCCGGAGGAAGAAGCAGTAGCAGCAGGCAACGAAATTGAAACTGGAGACGATGATCTGAACTCTGCGGCGTCATCAGGGAACCGCTGGGCTCAGGGCGAACGAGAGTCGCTAATGGTAGTCGCAACGTTCGTGGCGGCGGCCGCTTTCCAAGCCGGAATCAACCCTCCCGGCGGCGTCTGGCAAGACGACGGCGACCCCAGATACGAGGCCGGCAAGTCCATCATGGCCGCCAAAAACGAATCTCTGTACGTCACTTTCATCGTCGGCGCAACGCTGTGCCTGGCGGCTGCGCTGACGCAACTTCTGATGTTGCTCAACGATTTCACGAAAAAGGCCCAACTCTCGGCTTCCAGGTACTTTCTCTACTTCACCATGGGCACCGCAATCACCGGCATCGCTTTGGCTTATGGGTCGTCGGTTAGAGCTTTGACGCCGCCGCCGCTCTTGACGCAGGTCCTCTCTGTCCTCGGGGTTAATCTTCTTGTCAGTCTTCTCGTACTCTTAATTTCATTCTACTTTCAGACGAAG
Protein sequence
MSSRPEEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK
Homology
BLAST of MS001401 vs. NCBI nr
Match:
XP_022132046.1 (uncharacterized protein LOC111005012 [Momordica charantia])
HSP 1 Score: 231.1 bits (588), Expect = 7.5e-57
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0
Query: 1 MSSRPEEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPP 60
MSSRPEEEAVAAGNEIETGDDD NSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPP
Sbjct: 1 MSSRPEEEAVAAGNEIETGDDDRNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPP 60
Query: 61 GGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSA 120
GGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSA
Sbjct: 61 GGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSA 120
Query: 121 SR 123
SR
Sbjct: 121 SR 122
BLAST of MS001401 vs. NCBI nr
Match:
XP_016899921.1 (PREDICTED: uncharacterized protein LOC107990705 [Cucumis melo])
HSP 1 Score: 137.1 bits (344), Expect = 1.5e-28
Identity = 80/182 (43.96%), Postives = 121/182 (66.48%), Query Frame = 0
Query: 1 MSSRPEEEAVAAGNEIET-GDDDLNSAASSGNRWAQG-ERESLMVVATFVAAAAFQAGIN 60
MS + E+E+V + +T + D + + +G +R+ LMV TF+AA AFQAG N
Sbjct: 1 MSRKVEDESVLSIETDQTINEKDKENQKKKKKKEGEGRDRDFLMVATTFIAAMAFQAGTN 60
Query: 61 PPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQL 120
PPGGVWQDD P YEAGKSIMA K+ SL+++F+ G T+C A + Q ++LL ++K+
Sbjct: 61 PPGGVWQDDNSPNYEAGKSIMATKSPSLFISFMSGVTVCFACSAMQFIVLLGKSSEKS-W 120
Query: 121 SASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQ 180
S S+ F+YFTMG+ I+ I +AY S+++ALTP ++ V+ +L L++S++VL IS Y +
Sbjct: 121 SVSKSFIYFTMGSGISAIVVAYWSAIKALTPEAQMSHVIVMLKTTLVLSVVVLPISMYIE 180
BLAST of MS001401 vs. NCBI nr
Match:
KAA0064719.1 (ankyrin repeat-containing protein-like [Cucumis melo var. makuwa] >TYK00739.1 ankyrin repeat-containing protein-like [Cucumis melo var. makuwa])
HSP 1 Score: 133.3 bits (334), Expect = 2.1e-27
Identity = 70/139 (50.36%), Postives = 100/139 (71.94%), Query Frame = 0
Query: 42 MVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAA 101
MV TF+AA AFQAG NPPGGVWQDD P YEAGKSIMA K+ SL+++F+ G T+C A +
Sbjct: 1 MVATTFIAAMAFQAGTNPPGGVWQDDNSPNYEAGKSIMATKSPSLFISFMSGVTVCFACS 60
Query: 102 LTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLG 161
Q ++LL ++K+ S S+ F+YFTMG+ I+ I +AY S+++ALTP ++ V+ +L
Sbjct: 61 AMQFIVLLGKSSEKS-WSVSKSFIYFTMGSGISAIVVAYWSAIKALTPEAQMSHVIVMLK 120
Query: 162 VNLLVSLLVLLISFYFQTK 181
L++S++VL IS Y + K
Sbjct: 121 TTLVLSVVVLPISMYIEKK 138
BLAST of MS001401 vs. NCBI nr
Match:
KAA0064715.1 (ankyrin repeat-containing protein ITN1-like [Cucumis melo var. makuwa] >TYK00734.1 ankyrin repeat-containing protein ITN1-like [Cucumis melo var. makuwa])
HSP 1 Score: 114.4 bits (285), Expect = 1.0e-21
Identity = 77/183 (42.08%), Postives = 106/183 (57.92%), Query Frame = 0
Query: 1 MSSRPEEE---AVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGI 60
M+SR EE+ +AA N+ SS W + + E LMV+ TF+ +FQAG
Sbjct: 1 MASRVEEDEETTIAAENQ-----------TSSEKSWQKTDIELLMVIITFIGTISFQAGT 60
Query: 61 NPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQ 120
NPPGGVWQD EAGKSIMA+KN S ++ FIVG + + + QL+ L+N+ +
Sbjct: 61 NPPGGVWQDGS----EAGKSIMASKNPSQFLVFIVGVSTAMVLSAAQLMTLMNELPYN-K 120
Query: 121 LSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYF 180
LS SR F+Y ++G IT + AYGSSV ALTP ++ +V + L L V +V+ I Y
Sbjct: 121 LSDSRNFIYCSLGFIITALGFAYGSSVTALTPSSMIDEVKTALLTVLAVGAVVIAIVIYI 167
BLAST of MS001401 vs. NCBI nr
Match:
XP_016900016.1 (PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo])
HSP 1 Score: 113.6 bits (283), Expect = 1.8e-21
Identity = 74/175 (42.29%), Postives = 101/175 (57.71%), Query Frame = 0
Query: 6 EEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQ 65
EE +AA N+ SS W + + E LMV+ TF+ +FQAG NPPGGVWQ
Sbjct: 9 EETTIAAENQ-----------TSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQ 68
Query: 66 DDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSASRYFL 125
D EAGKSIMA+KN S ++ FIVG + + + QL+ L+N+ +LS SR F+
Sbjct: 69 DGS----EAGKSIMASKNPSQFLVFIVGVSTAMVLSAAQLMTLMNELPYN-KLSDSRNFI 128
Query: 126 YFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK 181
Y ++G IT + AYGSSV ALTP ++ +V + L L V +V+ I Y Q K
Sbjct: 129 YCSLGFIITALGFAYGSSVTALTPSSMIDEVKTALLTVLAVGAVVIAIVIYIQKK 167
BLAST of MS001401 vs. ExPASy TrEMBL
Match:
A0A6J1BR52 (uncharacterized protein LOC111005012 OS=Momordica charantia OX=3673 GN=LOC111005012 PE=4 SV=1)
HSP 1 Score: 231.1 bits (588), Expect = 3.6e-57
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0
Query: 1 MSSRPEEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPP 60
MSSRPEEEAVAAGNEIETGDDD NSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPP
Sbjct: 1 MSSRPEEEAVAAGNEIETGDDDRNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPP 60
Query: 61 GGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSA 120
GGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSA
Sbjct: 61 GGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSA 120
Query: 121 SR 123
SR
Sbjct: 121 SR 122
BLAST of MS001401 vs. ExPASy TrEMBL
Match:
A0A1S4DVA8 (uncharacterized protein LOC107990705 OS=Cucumis melo OX=3656 GN=LOC107990705 PE=4 SV=1)
HSP 1 Score: 137.1 bits (344), Expect = 7.2e-29
Identity = 80/182 (43.96%), Postives = 121/182 (66.48%), Query Frame = 0
Query: 1 MSSRPEEEAVAAGNEIET-GDDDLNSAASSGNRWAQG-ERESLMVVATFVAAAAFQAGIN 60
MS + E+E+V + +T + D + + +G +R+ LMV TF+AA AFQAG N
Sbjct: 1 MSRKVEDESVLSIETDQTINEKDKENQKKKKKKEGEGRDRDFLMVATTFIAAMAFQAGTN 60
Query: 61 PPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQL 120
PPGGVWQDD P YEAGKSIMA K+ SL+++F+ G T+C A + Q ++LL ++K+
Sbjct: 61 PPGGVWQDDNSPNYEAGKSIMATKSPSLFISFMSGVTVCFACSAMQFIVLLGKSSEKS-W 120
Query: 121 SASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQ 180
S S+ F+YFTMG+ I+ I +AY S+++ALTP ++ V+ +L L++S++VL IS Y +
Sbjct: 121 SVSKSFIYFTMGSGISAIVVAYWSAIKALTPEAQMSHVIVMLKTTLVLSVVVLPISMYIE 180
BLAST of MS001401 vs. ExPASy TrEMBL
Match:
A0A5D3BRK9 (Ankyrin repeat-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00290 PE=4 SV=1)
HSP 1 Score: 133.3 bits (334), Expect = 1.0e-27
Identity = 70/139 (50.36%), Postives = 100/139 (71.94%), Query Frame = 0
Query: 42 MVVATFVAAAAFQAGINPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAA 101
MV TF+AA AFQAG NPPGGVWQDD P YEAGKSIMA K+ SL+++F+ G T+C A +
Sbjct: 1 MVATTFIAAMAFQAGTNPPGGVWQDDNSPNYEAGKSIMATKSPSLFISFMSGVTVCFACS 60
Query: 102 LTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLG 161
Q ++LL ++K+ S S+ F+YFTMG+ I+ I +AY S+++ALTP ++ V+ +L
Sbjct: 61 AMQFIVLLGKSSEKS-WSVSKSFIYFTMGSGISAIVVAYWSAIKALTPEAQMSHVIVMLK 120
Query: 162 VNLLVSLLVLLISFYFQTK 181
L++S++VL IS Y + K
Sbjct: 121 TTLVLSVVVLPISMYIEKK 138
BLAST of MS001401 vs. ExPASy TrEMBL
Match:
A0A5A7VFP9 (Ankyrin repeat-containing protein ITN1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00240 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 5.0e-22
Identity = 77/183 (42.08%), Postives = 106/183 (57.92%), Query Frame = 0
Query: 1 MSSRPEEE---AVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGI 60
M+SR EE+ +AA N+ SS W + + E LMV+ TF+ +FQAG
Sbjct: 1 MASRVEEDEETTIAAENQ-----------TSSEKSWQKTDIELLMVIITFIGTISFQAGT 60
Query: 61 NPPGGVWQDDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQ 120
NPPGGVWQD EAGKSIMA+KN S ++ FIVG + + + QL+ L+N+ +
Sbjct: 61 NPPGGVWQDGS----EAGKSIMASKNPSQFLVFIVGVSTAMVLSAAQLMTLMNELPYN-K 120
Query: 121 LSASRYFLYFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYF 180
LS SR F+Y ++G IT + AYGSSV ALTP ++ +V + L L V +V+ I Y
Sbjct: 121 LSDSRNFIYCSLGFIITALGFAYGSSVTALTPSSMIDEVKTALLTVLAVGAVVIAIVIYI 167
BLAST of MS001401 vs. ExPASy TrEMBL
Match:
A0A1S4DVK4 (uncharacterized protein LOC103488514 OS=Cucumis melo OX=3656 GN=LOC103488514 PE=4 SV=1)
HSP 1 Score: 113.6 bits (283), Expect = 8.5e-22
Identity = 74/175 (42.29%), Postives = 101/175 (57.71%), Query Frame = 0
Query: 6 EEEAVAAGNEIETGDDDLNSAASSGNRWAQGERESLMVVATFVAAAAFQAGINPPGGVWQ 65
EE +AA N+ SS W + + E LMV+ TF+ +FQAG NPPGGVWQ
Sbjct: 9 EETTIAAENQ-----------TSSEKSWQKTDIELLMVIITFIGTISFQAGTNPPGGVWQ 68
Query: 66 DDGDPRYEAGKSIMAAKNESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSASRYFL 125
D EAGKSIMA+KN S ++ FIVG + + + QL+ L+N+ +LS SR F+
Sbjct: 69 DGS----EAGKSIMASKNPSQFLVFIVGVSTAMVLSAAQLMTLMNELPYN-KLSDSRNFI 128
Query: 126 YFTMGTAITGIALAYGSSVRALTPPPLLTQVLSVLGVNLLVSLLVLLISFYFQTK 181
Y ++G IT + AYGSSV ALTP ++ +V + L L V +V+ I Y Q K
Sbjct: 129 YCSLGFIITALGFAYGSSVTALTPSSMIDEVKTALLTVLAVGAVVIAIVIYIQKK 167
BLAST of MS001401 vs. TAIR 10
Match:
AT5G51160.1 (Ankyrin repeat family protein )
HSP 1 Score: 57.4 bits (137), Expect = 1.4e-08
Identity = 44/147 (29.93%), Postives = 69/147 (46.94%), Query Frame = 0
Query: 38 RESLMVVATFVAAAAFQAGINPPGGVWQDDGDP---------------RYEAGKSIMAAK 97
R +L+VVA+ VA A FQA + PPGG WQD P + AG+SIM
Sbjct: 271 RSALLVVASLVATATFQASLTPPGGTWQDSSIPAVSQNTTNVNTTNQQAHTAGQSIMGTF 330
Query: 98 NESLYVTFIVGATLCLAAALTQLLMLLNDFTKKAQLSASRYFLYFTMGTAITGIALAYG- 157
N + F+ T+ + +L+ L +L F + QL +YF+ T + IA +
Sbjct: 331 NGVAFTLFVFFNTIGFSVSLSMLNILTLGFPLRFQLQICMIAMYFSHNTTMASIAPDHVK 390
Query: 158 ------SSVRALTPPPLLTQVLSVLGV 163
+S+ A T P L+ + + +G+
Sbjct: 391 LYCILITSILAATTPGLMRLLENPIGM 417
BLAST of MS001401 vs. TAIR 10
Match:
AT4G11000.1 (Ankyrin repeat family protein )
HSP 1 Score: 48.9 bits (115), Expect = 4.9e-06
Identity = 25/62 (40.32%), Postives = 35/62 (56.45%), Query Frame = 0
Query: 34 AQGERESLMVVATFVAAAAFQAGINPPGGVWQDDGDPRY--EAGKSIMAAKNESLYVTFI 93
A R +++VVA + A +QAG++PPGG WQD D RY AG+ M +Y F
Sbjct: 247 ASDPRNAILVVAILIVTATYQAGLSPPGGFWQDTNDGRYGHMAGQMTM----PFIYAFFF 304
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_022132046.1 | 7.5e-57 | 99.18 | uncharacterized protein LOC111005012 [Momordica charantia] | [more] |
| XP_016899921.1 | 1.5e-28 | 43.96 | PREDICTED: uncharacterized protein LOC107990705 [Cucumis melo] | [more] |
| KAA0064719.1 | 2.1e-27 | 50.36 | ankyrin repeat-containing protein-like [Cucumis melo var. makuwa] >TYK00739.1 an... | [more] |
| KAA0064715.1 | 1.0e-21 | 42.08 | ankyrin repeat-containing protein ITN1-like [Cucumis melo var. makuwa] >TYK00734... | [more] |
| XP_016900016.1 | 1.8e-21 | 42.29 | PREDICTED: uncharacterized protein LOC103488514 [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1BR52 | 3.6e-57 | 99.18 | uncharacterized protein LOC111005012 OS=Momordica charantia OX=3673 GN=LOC111005... | [more] |
| A0A1S4DVA8 | 7.2e-29 | 43.96 | uncharacterized protein LOC107990705 OS=Cucumis melo OX=3656 GN=LOC107990705 PE=... | [more] |
| A0A5D3BRK9 | 1.0e-27 | 50.36 | Ankyrin repeat-containing protein-like OS=Cucumis melo var. makuwa OX=1194695 GN... | [more] |
| A0A5A7VFP9 | 5.0e-22 | 42.08 | Ankyrin repeat-containing protein ITN1-like OS=Cucumis melo var. makuwa OX=11946... | [more] |
| A0A1S4DVK4 | 8.5e-22 | 42.29 | uncharacterized protein LOC103488514 OS=Cucumis melo OX=3656 GN=LOC103488514 PE=... | [more] |
