MS001390 (gene) Bitter gourd (TR) v1

Overview


Name	MS001390
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Damaged dna-binding 2, putative isoform 1
Location	scaffold36: 3814141 .. 3815036 (+)
RNA-Seq Expression	MS001390
Synteny	MS001390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATTGCTTTGGATAGAAATAGCAGGATTCCGCCGTCCGTTTTCTCGCAAGGCGGCTTGCCGTCGTACTGCTCCGTCTTGAATACGGCGGGAATTATTCCGGTAGTTCGACGAGAGGCTGCCGTCGGTGATGCAGTGGCGCCGGCGGAGGAGTTGGATAGATGTAGTTCGTCTTCATCGTCGTCGATCGGAGAAAACAGTGGTTTGTCTGTAAAATCGTCGGATAATGACGACGACGGGGAAAATAATGAGGCGGAAAGCTCTTATAAAGGTCCTCTAGGAATGGAATCGTTGGAGGAAGTTTTGCCTATGAGGTTAGCGCTTGTGTTTTGTATTTTGTTTTTCCTCTAAGTAATCTTCAATTTCTTTTTCTTCTTCTTTCTCTTCTTCTCCATGGATTCTAGATTTAGGGCAACTTGATCGATCGCCTATCGATTTCGATTTGACGGCTTTGATGATGAGATTCCGTTGAGTTTTAACAAGTTTGTATTGTCTCGTGAATCATTTGCAGGAGAGGAATTTCAAATTTCTACAACGGAAAATCCAAATCCTTCACGAGCCTGGCAGAGGCTTCCTCTGCCGCCACCATTAAAGACATAGCAAAGCCTGAGAATGCCTATTCCCGGAAACGGAGAAATCTTCTTGCATCTAACCTCATCGCCGGCGGCATATCGAAGCGGCCGATCAGTTCAAGTCGAAGCTCGTTGGCGCTGGCTGTCGCCATGTACACCTCTGGAAGCCACAGCAGCGACGATCTGAATTCGAGATCGCCACCACCGATTCGTCCTCCATTGCACCCAAACGGACGATCTTCTCGCAGCAATTTAGCTTCTACAGTTCATCTTCTTTGTAAATACCCCACCTGGCGATCATACTCCCTGGCCGATATACAG

mRNA sequence

ATGTCAATTGCTTTGGATAGAAATAGCAGGATTCCGCCGTCCGTTTTCTCGCAAGGCGGCTTGCCGTCGTACTGCTCCGTCTTGAATACGGCGGGAATTATTCCGGTAGTTCGACGAGAGGCTGCCGTCGGTGATGCAGTGGCGCCGGCGGAGGAGTTGGATAGATGTAGTTCGTCTTCATCGTCGTCGATCGGAGAAAACAGTGGTTTGTCTGTAAAATCGTCGGATAATGACGACGACGGGGAAAATAATGAGGCGGAAAGCTCTTATAAAGGTCCTCTAGGAATGGAATCGTTGGAGGAAGTTTTGCCTATGAGGAGAGGAATTTCAAATTTCTACAACGGAAAATCCAAATCCTTCACGAGCCTGGCAGAGGCTTCCTCTGCCGCCACCATTAAAGACATAGCAAAGCCTGAGAATGCCTATTCCCGGAAACGGAGAAATCTTCTTGCATCTAACCTCATCGCCGGCGGCATATCGAAGCGGCCGATCAGTTCAAGTCGAAGCTCGTTGGCGCTGGCTGTCGCCATGTACACCTCTGGAAGCCACAGCAGCGACGATCTGAATTCGAGATCGCCACCACCGATTCGTCCTCCATTGCACCCAAACGGACGATCTTCTCGCAGCAATTTAGCTTCTACAGTTCATCTTCTTTGTAAATACCCCACCTGGCGATCATACTCCCTGGCCGATATACAG

Coding sequence (CDS)

ATGTCAATTGCTTTGGATAGAAATAGCAGGATTCCGCCGTCCGTTTTCTCGCAAGGCGGCTTGCCGTCGTACTGCTCCGTCTTGAATACGGCGGGAATTATTCCGGTAGTTCGACGAGAGGCTGCCGTCGGTGATGCAGTGGCGCCGGCGGAGGAGTTGGATAGATGTAGTTCGTCTTCATCGTCGTCGATCGGAGAAAACAGTGGTTTGTCTGTAAAATCGTCGGATAATGACGACGACGGGGAAAATAATGAGGCGGAAAGCTCTTATAAAGGTCCTCTAGGAATGGAATCGTTGGAGGAAGTTTTGCCTATGAGGAGAGGAATTTCAAATTTCTACAACGGAAAATCCAAATCCTTCACGAGCCTGGCAGAGGCTTCCTCTGCCGCCACCATTAAAGACATAGCAAAGCCTGAGAATGCCTATTCCCGGAAACGGAGAAATCTTCTTGCATCTAACCTCATCGCCGGCGGCATATCGAAGCGGCCGATCAGTTCAAGTCGAAGCTCGTTGGCGCTGGCTGTCGCCATGTACACCTCTGGAAGCCACAGCAGCGACGATCTGAATTCGAGATCGCCACCACCGATTCGTCCTCCATTGCACCCAAACGGACGATCTTCTCGCAGCAATTTAGCTTCTACAGTTCATCTTCTTTGTAAATACCCCACCTGGCGATCATACTCCCTGGCCGATATACAG

Protein sequence

MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSSSSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSFTSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRPISSSRSSLALAVAMYTSGSHSSDDLNSRSPPPIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ

Homology

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BLAST of MS001390 vs. NCBI nr
Match: XP_022131782.1 (uncharacterized protein LOC111004861 [Momordica charantia])

HSP 1 Score: 440.7 bits (1132), Expect = 8.1e-120
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS 60
           MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS
Sbjct: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS 60

Query: 61  SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF 120
           SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF
Sbjct: 61  SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF 120

Query: 121 TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRPISSSRSSLALAVAMYTS 180
           TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRPISSSRSSLALAVAMYTS
Sbjct: 121 TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRPISSSRSSLALAVAMYTS 180

Query: 181 GSHSSDDLNSRSPPPIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 234
           GSHSSDDLNSRSPPPIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ
Sbjct: 181 GSHSSDDLNSRSPPPIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 233

[Close]

BLAST of MS001390 vs. NCBI nr
Match: KAA0064705.1 (Damaged dna-binding 2, putative isoform 1 [Cucumis melo var. makuwa] >TYK00723.1 Damaged dna-binding 2, putative isoform 1 [Cucumis melo var. makuwa])

HSP 1 Score: 347.4 bits (890), Expect = 9.3e-92
Identity = 191/236 (80.93%), Postives = 213/236 (90.25%), Query Frame = 0


Query: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS 60
           MSIAL+ N+RIPPSVFSQ GLP YCSVLNT GIIPVVRREAAV DAVAP E++DRCSSSS
Sbjct: 1   MSIALESNTRIPPSVFSQAGLPPYCSVLNTTGIIPVVRREAAVADAVAP-EDVDRCSSSS 60

Query: 61  SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF 120
           SSSIGENSG SV+SSDN DDGE+NEAESSY+GPLGMESLEEVLP+RRGISNFYNGKSKSF
Sbjct: 61  SSSIGENSGFSVRSSDN-DDGEDNEAESSYRGPLGMESLEEVLPIRRGISNFYNGKSKSF 120

Query: 121 TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRP-ISSSRSSLALAVAMYT 180
           TSLA+ASS+++IK+IAKPENA+SRKRRNLLASNLIAGGISKRP ISSSRSSLALAV + +
Sbjct: 121 TSLADASSSSSIKEIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSS 180

Query: 181 SGSHSSDDLNSRSPP--PIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 234
           S SH ++DLNS  PP  PIRPPLHPNGR+SR N  S V  LCK+PTWRSYS+A+IQ
Sbjct: 181 SESHKNNDLNSIIPPPTPIRPPLHPNGRASRINSGSAVPSLCKFPTWRSYSMANIQ 234

[Close]

BLAST of MS001390 vs. NCBI nr
Match: XP_008445543.1 (PREDICTED: uncharacterized protein LOC103488525 [Cucumis melo])

HSP 1 Score: 347.4 bits (890), Expect = 9.3e-92
Identity = 191/236 (80.93%), Postives = 213/236 (90.25%), Query Frame = 0


Query: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS 60
           MSIAL+ N+RIPPSVFSQ GLP YCSVLNT GIIPVVRREAAV DAVAP E++DRCSSSS
Sbjct: 36  MSIALESNTRIPPSVFSQAGLPPYCSVLNTTGIIPVVRREAAVADAVAP-EDVDRCSSSS 95

Query: 61  SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF 120
           SSSIGENSG SV+SSDN DDGE+NEAESSY+GPLGMESLEEVLP+RRGISNFYNGKSKSF
Sbjct: 96  SSSIGENSGFSVRSSDN-DDGEDNEAESSYRGPLGMESLEEVLPIRRGISNFYNGKSKSF 155

Query: 121 TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRP-ISSSRSSLALAVAMYT 180
           TSLA+ASS+++IK+IAKPENA+SRKRRNLLASNLIAGGISKRP ISSSRSSLALAV + +
Sbjct: 156 TSLADASSSSSIKEIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSS 215

Query: 181 SGSHSSDDLNSRSPP--PIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 234
           S SH ++DLNS  PP  PIRPPLHPNGR+SR N  S V  LCK+PTWRSYS+A+IQ
Sbjct: 216 SESHKNNDLNSIIPPPTPIRPPLHPNGRASRINSGSAVPSLCKFPTWRSYSMANIQ 269

[Close]

BLAST of MS001390 vs. NCBI nr
Match: XP_038883984.1 (uncharacterized protein LOC120074946 [Benincasa hispida])

HSP 1 Score: 346.7 bits (888), Expect = 1.6e-91
Identity = 193/235 (82.13%), Postives = 214/235 (91.06%), Query Frame = 0


Query: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRRE-AAVGDAVAPAEELDRCSSS 60
           MSIAL+ NSRIPPSVFSQ GLPSYCSVLNT G IPVVR+E AAVGDAV  A E+D CSSS
Sbjct: 1   MSIALESNSRIPPSVFSQSGLPSYCSVLNTTGRIPVVRQEAAAVGDAV--AAEVDGCSSS 60

Query: 61  SSSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKS 120
           SSSSIGENSG SV+SSDN D+GE+NEAESSYKGPLGMESLEEVLP+RRGISNFYNGKSKS
Sbjct: 61  SSSSIGENSGFSVRSSDN-DNGEDNEAESSYKGPLGMESLEEVLPIRRGISNFYNGKSKS 120

Query: 121 FTSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRP-ISSSRSSLALAVAMY 180
           FTSLA+ASS+++IKDIAKPENA+SRKRRNLLASNLIAGGISKRP I+SSRSSLALAV + 
Sbjct: 121 FTSLADASSSSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIINSSRSSLALAVVLS 180

Query: 181 TSGSHSSDDLNSRSPPPIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 234
           +S SH+S+DLNSR  PPIRPPLHPNGR+SRSN  S V LLCK+P+WRSYSLA+IQ
Sbjct: 181 SSESHNSNDLNSRLSPPIRPPLHPNGRASRSNSGSPVPLLCKFPSWRSYSLANIQ 232

[Close]

BLAST of MS001390 vs. NCBI nr
Match: XP_022962518.1 (uncharacterized protein LOC111462922 [Cucurbita moschata] >KAG6598596.1 hypothetical protein SDJN03_08374, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029529.1 hypothetical protein SDJN02_07868 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 341.7 bits (875), Expect = 5.1e-90
Identity = 189/234 (80.77%), Postives = 204/234 (87.18%), Query Frame = 0


Query: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS 60
           MSIAL+ NSRIPPSVFSQG LPSYCSVLNT G+IPVVRREA VGD VAPAE +DRCSSSS
Sbjct: 1   MSIALESNSRIPPSVFSQGVLPSYCSVLNTTGVIPVVRREAVVGDVVAPAEVVDRCSSSS 60

Query: 61  SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF 120
           SSSIGENS  SV+S  NDDDGE+NEAESSYK  LGMESLEEVLP+RRGISNFYNGKSKSF
Sbjct: 61  SSSIGENSDFSVRSV-NDDDGEDNEAESSYKESLGMESLEEVLPIRRGISNFYNGKSKSF 120

Query: 121 TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRPISSSR-SSLALAVAMYT 180
           TSL +ASS ++IKDIAKPENA+SRKRRNLLASNLIAGGISKRPI SSR SSLALAV M +
Sbjct: 121 TSLGDASSTSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSRGSSLALAVFMSS 180

Query: 181 SGSHSSDDLNSRSPPPIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 234
           S   S +DLNSR  P IRPPLHP GR+SRSN  S V LLCK+PTWRSYSLA+IQ
Sbjct: 181 SERQSGEDLNSRLSPTIRPPLHPKGRASRSNSGSAVPLLCKFPTWRSYSLANIQ 233

[Close]

BLAST of MS001390 vs. ExPASy TrEMBL
Match: A0A6J1BS00 (uncharacterized protein LOC111004861 OS=Momordica charantia OX=3673 GN=LOC111004861 PE=4 SV=1)

HSP 1 Score: 440.7 bits (1132), Expect = 3.9e-120
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 0


Query: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS 60
           MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS
Sbjct: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS 60

Query: 61  SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF 120
           SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF
Sbjct: 61  SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF 120

Query: 121 TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRPISSSRSSLALAVAMYTS 180
           TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRPISSSRSSLALAVAMYTS
Sbjct: 121 TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRPISSSRSSLALAVAMYTS 180

Query: 181 GSHSSDDLNSRSPPPIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 234
           GSHSSDDLNSRSPPPIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ
Sbjct: 181 GSHSSDDLNSRSPPPIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 233

[Close]

BLAST of MS001390 vs. ExPASy TrEMBL
Match: A0A5A7VFP0 (Damaged dna-binding 2, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00100 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.5e-92
Identity = 191/236 (80.93%), Postives = 213/236 (90.25%), Query Frame = 0


Query: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS 60
           MSIAL+ N+RIPPSVFSQ GLP YCSVLNT GIIPVVRREAAV DAVAP E++DRCSSSS
Sbjct: 1   MSIALESNTRIPPSVFSQAGLPPYCSVLNTTGIIPVVRREAAVADAVAP-EDVDRCSSSS 60

Query: 61  SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF 120
           SSSIGENSG SV+SSDN DDGE+NEAESSY+GPLGMESLEEVLP+RRGISNFYNGKSKSF
Sbjct: 61  SSSIGENSGFSVRSSDN-DDGEDNEAESSYRGPLGMESLEEVLPIRRGISNFYNGKSKSF 120

Query: 121 TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRP-ISSSRSSLALAVAMYT 180
           TSLA+ASS+++IK+IAKPENA+SRKRRNLLASNLIAGGISKRP ISSSRSSLALAV + +
Sbjct: 121 TSLADASSSSSIKEIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSS 180

Query: 181 SGSHSSDDLNSRSPP--PIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 234
           S SH ++DLNS  PP  PIRPPLHPNGR+SR N  S V  LCK+PTWRSYS+A+IQ
Sbjct: 181 SESHKNNDLNSIIPPPTPIRPPLHPNGRASRINSGSAVPSLCKFPTWRSYSMANIQ 234

[Close]

BLAST of MS001390 vs. ExPASy TrEMBL
Match: A0A1S3BCZ8 (uncharacterized protein LOC103488525 OS=Cucumis melo OX=3656 GN=LOC103488525 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 4.5e-92
Identity = 191/236 (80.93%), Postives = 213/236 (90.25%), Query Frame = 0


Query: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS 60
           MSIAL+ N+RIPPSVFSQ GLP YCSVLNT GIIPVVRREAAV DAVAP E++DRCSSSS
Sbjct: 36  MSIALESNTRIPPSVFSQAGLPPYCSVLNTTGIIPVVRREAAVADAVAP-EDVDRCSSSS 95

Query: 61  SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF 120
           SSSIGENSG SV+SSDN DDGE+NEAESSY+GPLGMESLEEVLP+RRGISNFYNGKSKSF
Sbjct: 96  SSSIGENSGFSVRSSDN-DDGEDNEAESSYRGPLGMESLEEVLPIRRGISNFYNGKSKSF 155

Query: 121 TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRP-ISSSRSSLALAVAMYT 180
           TSLA+ASS+++IK+IAKPENA+SRKRRNLLASNLIAGGISKRP ISSSRSSLALAV + +
Sbjct: 156 TSLADASSSSSIKEIAKPENAFSRKRRNLLASNLIAGGISKRPIISSSRSSLALAVVLSS 215

Query: 181 SGSHSSDDLNSRSPP--PIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 234
           S SH ++DLNS  PP  PIRPPLHPNGR+SR N  S V  LCK+PTWRSYS+A+IQ
Sbjct: 216 SESHKNNDLNSIIPPPTPIRPPLHPNGRASRINSGSAVPSLCKFPTWRSYSMANIQ 269

[Close]

BLAST of MS001390 vs. ExPASy TrEMBL
Match: A0A6J1HF10 (uncharacterized protein LOC111462922 OS=Cucurbita moschata OX=3662 GN=LOC111462922 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 2.5e-90
Identity = 189/234 (80.77%), Postives = 204/234 (87.18%), Query Frame = 0


Query: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS 60
           MSIAL+ NSRIPPSVFSQG LPSYCSVLNT G+IPVVRREA VGD VAPAE +DRCSSSS
Sbjct: 1   MSIALESNSRIPPSVFSQGVLPSYCSVLNTTGVIPVVRREAVVGDVVAPAEVVDRCSSSS 60

Query: 61  SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF 120
           SSSIGENS  SV+S  NDDDGE+NEAESSYK  LGMESLEEVLP+RRGISNFYNGKSKSF
Sbjct: 61  SSSIGENSDFSVRSV-NDDDGEDNEAESSYKESLGMESLEEVLPIRRGISNFYNGKSKSF 120

Query: 121 TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRPISSSR-SSLALAVAMYT 180
           TSL +ASS ++IKDIAKPENA+SRKRRNLLASNLIAGGISKRPI SSR SSLALAV M +
Sbjct: 121 TSLGDASSTSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSRGSSLALAVFMSS 180

Query: 181 SGSHSSDDLNSRSPPPIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 234
           S   S +DLNSR  P IRPPLHP GR+SRSN  S V LLCK+PTWRSYSLA+IQ
Sbjct: 181 SERQSGEDLNSRLSPTIRPPLHPKGRASRSNSGSAVPLLCKFPTWRSYSLANIQ 233

[Close]

BLAST of MS001390 vs. ExPASy TrEMBL
Match: A0A6J1K8D9 (uncharacterized protein LOC111492074 OS=Cucurbita maxima OX=3661 GN=LOC111492074 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 2.1e-89
Identity = 189/234 (80.77%), Postives = 203/234 (86.75%), Query Frame = 0


Query: 1   MSIALDRNSRIPPSVFSQGGLPSYCSVLNTAGIIPVVRREAAVGDAVAPAEELDRCSSSS 60
           MSIAL+ NSRIPPSVFSQG LPSYCSVLNT G+IPVVRREA VGD VAPAE +DRCSSSS
Sbjct: 1   MSIALESNSRIPPSVFSQGVLPSYCSVLNTTGVIPVVRREAVVGDVVAPAEVVDRCSSSS 60

Query: 61  SSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNGKSKSF 120
           SSSIGENS  SV+S  NDDDGE+NEAESSYK  LGMESLEEVL +RRGISNFYNGKSKSF
Sbjct: 61  SSSIGENSDFSVRSV-NDDDGEDNEAESSYKESLGMESLEEVLSIRRGISNFYNGKSKSF 120

Query: 121 TSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGISKRPISSSR-SSLALAVAMYT 180
           TSL +ASS ++IKDIAKPENA+SRKRRNLLASNLIAGGISKRPI SSR SSLALAV M +
Sbjct: 121 TSLGDASSTSSIKDIAKPENAFSRKRRNLLASNLIAGGISKRPIISSRGSSLALAVFMSS 180

Query: 181 SGSHSSDDLNSRSPPPIRPPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLADIQ 234
           S   S D LNSR  P IRPPLHPNGR+SRSN  S V LLCK+PTWRSYSLA+IQ
Sbjct: 181 SERKSGDVLNSRLSPTIRPPLHPNGRASRSNSGSAVPLLCKFPTWRSYSLANIQ 233

[Close]

BLAST of MS001390 vs. TAIR 10
Match: AT5G21940.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G43850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 130.2 bits (326), Expect = 2.2e-30
Identity = 106/221 (47.96%), Postives = 132/221 (59.73%), Query Frame = 0


Query: 48  APAEELDRCSSSSSSSIGENSGLSVKSS-DNDDDGENNEAESSYKGPLG-MESLEEVLPM 107
           +P++     SSS+SSSIG NS    KSS D  DD   NE ES YKGPL  MESLE+VLP+
Sbjct: 28  SPSDSSSSPSSSASSSIGRNSDDGEKSSEDGGDDAGENEVESPYKGPLEMMESLEQVLPV 87

Query: 108 RRGISNFYNGKSKSFTSL-AEASSAAT----IKDIAKPENAYSRKRRNLLASNL------ 167
           R+GIS +Y+GKSKSFT+L AEA+SA T    +KD+AKPEN YSR+RRNLL   +      
Sbjct: 88  RKGISKYYSGKSKSFTNLTAEAASALTSSSSMKDLAKPENPYSRRRRNLLCHQIWENNKT 147

Query: 168 -IAGGISKRPI-SSSRSSLALAVA-----MYTSGSHSSDDLNSRSPP-----PIR----- 227
              GGISK+ + SSSRS+L LA+A     M   GS S  D +  S P     P R     
Sbjct: 148 TPRGGISKKHVMSSSRSALTLAMAVAAGVMTGEGSSSGGDSSPGSSPTTSGSPPRQLHHH 207

Query: 228 -------PPLHPNGRSSRSNLASTVHLLCKYPTWRSYSLAD 232
                  PPL+P  + S  NL S+   L  +  WRS+S+AD
Sbjct: 208 QHQMKKLPPLYPRSQGSFGNLTSSQSSL-GFCAWRSFSVAD 247

[Close]

BLAST of MS001390 vs. TAIR 10
Match: AT3G43850.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G21940.1); Has 215 Blast hits to 215 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 213; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 108.2 bits (269), Expect = 8.9e-24
Identity = 73/133 (54.89%), Postives = 88/133 (66.17%), Query Frame = 0


Query: 57  SSSSSSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLG-MESLEEVLPMRRGISNFYNG 116
           SS+SS SIGENS        +DD+G  NE ESSY GPL  MESLEE LP++R IS FY G
Sbjct: 23  SSTSSDSIGENS--------DDDEGGENEIESSYNGPLDMMESLEEALPIKRAISKFYKG 82

Query: 117 KSKSFTSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIA-GGISKRPISSSRSSLALA 176
           KSKSF SL+E SS   +KD+ KPEN YSR+RRNLL+  + + GGISK+P  S      LA
Sbjct: 83  KSKSFMSLSETSS-LPVKDLTKPENLYSRRRRNLLSHRICSRGGISKKPFKS-----VLA 141

Query: 177 VAMYTSGSHSSDD 188
           ++     S SS D
Sbjct: 143 MSQREGDSSSSGD 141

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BLAST of MS001390 vs. TAIR 10
Match: AT2G24550.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G31510.1); Has 219 Blast hits to 219 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 2; Plants - 184; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). )

HSP 1 Score: 67.4 bits (163), Expect = 1.7e-11
Identity = 49/106 (46.23%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 57  SSSSSSSIGENSGLSVKSSDNDDDGENNEAESSYKGPLG--MESLEEVLPMRRGISNFYN 116
           SS SSSSIGE       SS+N+++ E ++A S  +G L     SLE+ LP++RG+SN Y 
Sbjct: 64  SSDSSSSIGE-------SSENEEEEEEDDAVSCQRGTLDSFSSSLEDSLPIKRGLSNHYV 123

Query: 117 GKSKSFTSLAEASSAATIKDIAKPENAYSRKRRNLLASNLIAGGIS 161
           GKSKSF +L EA+S A  KD+ K EN ++++RR ++A+ L   G S
Sbjct: 124 GKSKSFGNLMEAASKA--KDLEKVENPFNKRRRLVIANKLRRRGRS 160

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BLAST of MS001390 vs. TAIR 10
Match: AT5G24890.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 57.0 bits (136), Expect = 2.3e-08
Identity = 41/99 (41.41%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 58  SSSSSSIGE--NSGLSVKSSDNDDDGENNEAESSYKGPLGMESLEEVLPMRRGISNFYNG 117
           SS SSSIG   +S    + S+N++D  +++ E   +G   M SLE+ LP +RG+SN Y G
Sbjct: 59  SSDSSSIGTPGDSEEDEEESENENDDVSSK-ELGLRGLASMSSLEDSLPSKRGLSNHYKG 118

Query: 118 KSKSFTSLAEASSAATIKDIAKPENAYSRKRRNLLASNL 155
           KSKSF +L E  S   +K++AK EN  +++RR  + + L
Sbjct: 119 KSKSFGNLGEIGS---VKEVAKQENPLNKRRRLQICNKL 153

[Close]

BLAST of MS001390 vs. TAIR 10
Match: AT4G31510.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24550.1); Has 205 Blast hits to 205 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 3; Plants - 187; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 52.4 bits (124), Expect = 5.8e-07
Identity = 44/123 (35.77%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 36  VVRREAAVGDAVAPAEELDRCSSS----SSSSIGENSGLSVKSSDNDDDGENNEAESSYK 95
           V   + AV  +++    L RC  S    SSSS+GE S      ++ D+D   + ++  + 
Sbjct: 15  VTTHDQAVPASLSSRIGLRRCGRSPPPESSSSVGETS-----ENEEDEDDAVSSSQGRWL 74

Query: 96  GPLGMESLEEVLPMRRGISNFYNGKSKSFTSLAEASSAATIKDIAKPENAYSRKRRNLLA 155
                 SLE+ LP++RG+SN Y GKSKSF +L EAS+     D+ K E+  +++RR L+A
Sbjct: 75  NSFS-SSLEDSLPIKRGLSNHYIGKSKSFGNLMEASNT---NDLVKVESPLNKRRRLLIA 128

The following BLAST results are available for this feature:

BLAST of MS001390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131782.1	8.1e-120	100.00	uncharacterized protein LOC111004861 [Momordica charantia]	[more]
KAA0064705.1	9.3e-92	80.93	Damaged dna-binding 2, putative isoform 1 [Cucumis melo var. makuwa] >TYK00723.1...	[more]
XP_008445543.1	9.3e-92	80.93	PREDICTED: uncharacterized protein LOC103488525 [Cucumis melo]	[more]
XP_038883984.1	1.6e-91	82.13	uncharacterized protein LOC120074946 [Benincasa hispida]	[more]
XP_022962518.1	5.1e-90	80.77	uncharacterized protein LOC111462922 [Cucurbita moschata] >KAG6598596.1 hypothet...	[more]

BLAST of MS001390 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BS00	3.9e-120	100.00	uncharacterized protein LOC111004861 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A5A7VFP0	4.5e-92	80.93	Damaged dna-binding 2, putative isoform 1 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3BCZ8	4.5e-92	80.93	uncharacterized protein LOC103488525 OS=Cucumis melo OX=3656 GN=LOC103488525 PE=...	[more]
A0A6J1HF10	2.5e-90	80.77	uncharacterized protein LOC111462922 OS=Cucurbita moschata OX=3662 GN=LOC1114629...	[more]
A0A6J1K8D9	2.1e-89	80.77	uncharacterized protein LOC111492074 OS=Cucurbita maxima OX=3661 GN=LOC111492074...	[more]

BLAST of MS001390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G21940.1	2.2e-30	47.96	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G43850.1	8.9e-24	54.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24550.1	1.7e-11	46.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G24890.1	2.3e-08	41.41	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G31510.1	5.8e-07	35.77	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 48..96
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..72
None	No IPR available	PANTHER	PTHR33172	OS08G0516900 PROTEIN	coord: 50..233
None	No IPR available	PANTHER	PTHR33172:SF37	MYOSIN LIGHT CHAIN KINASE DDB_G0279831 ISOFORM X1-RELATED	coord: 50..233

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001390.1	MS001390.1	mRNA