MS001328 (gene) Bitter gourd (TR) v1

Overview
NameMS001328
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionUnknown protein
Locationscaffold36: 3292682 .. 3292795 (-)
RNA-Seq ExpressionMS001328
SyntenyMS001328
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AATGCTAGATTGAGGAAACCACTCTATTCTCCAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCGAGAAAGTTGATTGGAAAGTCATTTCACGAGATGCTCTTTTCATG

mRNA sequence

AATGCTAGATTGAGGAAACCACTCTATTCTCCAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCGAGAAAGTTGATTGGAAAGTCATTTCACGAGATGCTCTTTTCATG

Coding sequence (CDS)

AATGCTAGATTGAGGAAACCACTCTATTCTCCAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCGAGAAAGTTGATTGGAAAGTCATTTCACGAGATGCTCTTTTCATG

Protein sequence

NARLRKPLYSPKTSCCQNRMIGSEKVDWKVISRDALFM
Homology
BLAST of MS001328 vs. NCBI nr
Match: KGN62963.1 (hypothetical protein Csa_021936 [Cucumis sativus])

HSP 1 Score: 70.1 bits (170), Expect = 4.7e-09
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 1   NARLRKPLYSPKTSCCQNRMIGSEKVDWKVISRDALF 38
           N RLR PL+S KTSCCQNRMIGS+KVDW+VISRDALF
Sbjct: 171 NGRLRNPLHSLKTSCCQNRMIGSQKVDWEVISRDALF 207

BLAST of MS001328 vs. ExPASy TrEMBL
Match: A0A0A0LME2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381880 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 0

Query: 1   NARLRKPLYSPKTSCCQNRMIGSEKVDWKVISRDALF 38
           N RLR PL+S KTSCCQNRMIGS+KVDW+VISRDALF
Sbjct: 171 NGRLRNPLHSLKTSCCQNRMIGSQKVDWEVISRDALF 207

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN62963.14.7e-0983.78hypothetical protein Csa_021936 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LME22.3e-0983.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381880 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001328.1MS001328.1mRNA