MS001304 (gene) Bitter gourd (TR) v1

Overview


Name	MS001304
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Tail fiber
Location	scaffold36: 3167248 .. 3171246 (-)
RNA-Seq Expression	MS001304
Synteny	MS001304

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCACCCCCCACGCCATCGTCGACATCAACAACATCCAGGGGTTGGGTCAGAAATCTTTCATCAATCGCATCTCGCATCTTCTTCTTCCTTATCATACTTCAGATCCCTCTCTTCAGGTGTGTTTTCATCTTCTTCCCCATTTCTTTTCTACTCTGAAAGTCCATATTACTTAGTTACTCGGATAGTAGTATTGATTAGCACTGATTCTCTTTAGTTATGTCTACTTTAAGTTGCGATTAGCGTTAAAGTTTTGAAGATTATATGAGAGTCATGGCTTATTGTTACTGTCACTCTGCTGCTTTCTCTTCAGTTATATTGTTCATACTTTGGCTTCTGTGTCTTCATCTTTCTGTTTTGTCTATATGTTCGAATATCCGATTGTGAGAAAGTTGAATTTTCCATAGTTGCAGAGTTGGTCGTCATTTGTCGTGATGTCACAGTAGGAAATTGGGGTTTAAATCACTTCCTCTCCGTAGGAATAGTTTATGTGTTGTGTGTCGTGCATAAAAACTAATACGCAAGGATACATCCGAAGGGAGTGTTAAAGAATGGGATGAGAAGATTAAATAGCTAAGTCTTTGCAATTTCTTTTCTAATCGAACCACCGTGTATGCATTCTATTTGCTTGGTTGCATTATTGTGTATTCGGTTTAATGGTTCTCGTTTTTTCAAGCGCTTACACTTCTTGTGCTATTCCTGGTAAAAGAATAATGAATATGATTAGAATCAATATGTGGTATTTTCCTTACGTTTGAGATGTTACCATTTTCCTTCCGTCCATGACATTTGATTTTTGAACTCCTCATTCGCATCACTTTCATCGCCATGTCCTCTACTTCCATGAATTGATGATATGGAAAGGGAAACTGCCTACATAAGCTCGAAAGACATTTGTAATGTGTGTTTGCTGACATGCTTATATAATCTAGAAATAAAGCTTGCCAAATAAATAGGAAACAGATGGCTGTGAAGGTGCTACTTCTATTTCTATTTGCTTCCTCGGTTATTGGCTCAAGTATTACTTCCAATATTCTATTCAACACACGTTCATGATCTGAAGTTATGACTCTTGGCTACTAAAAGTTAAAAAATGGTTATTCTTGTGTTTTTTGTCCAATAATATTTTACTCTTTGGGTGGATATGCTCATTACATAATTAGAAATCTCTCTTCTCTTTCAGGATCCCATGCAGATCTGGCATGTGTACTACTCCTTTGCACGTGACTTCATCCCAGTTGATTGCAAGTGAAGTCTTTCCTGCACCTGTTGTTAAGGCACTTCTCTATCCTGGAGCAATCGTGAATGGACTTGTTATGAACTTGACAGTTCCTAGCTGGAGTAACTTGTTAGACATATATAACTTGACCAATGTGAAGGAAGCCTCTGCTGTGACTGATCTTCAACGTTTAGAGGTTTTTTCTCTTGACCCCCTTGTTATTTGTAGAATTAGATCTATTATATGGTTCTATCTTGGATTCAAGCCCTTATTCTTGTCAGAGAAATTACGATATTTTAAAATTTATCAACATGGTTAGCTTCCAAACAAGCTTCCCGGAGTTTCCTTTGGAAACCATTTGGGAATTTGATAGAACTCCTTTATTTGTTCACATATAGAGGCACATAGCTTAGGGAGAATTTGAGAGCTCTCTATCTTGAACACCAAGATTTTACCCAAAAAGTGCCCATTTCATCGTAATCTATATTCTAAATGCTCTCTGACTGCATACCCTTCATGTCAGTCCAACTAACTTGGTCCCGCTACTTACATTCATGCTAAATGCTAAGCTGATCCCCCTTAATCCTTTATGATGACATACTTTTACTATTGAGGGCTATCACTACCCACACCCCCCAAATAGCGGATGAGGTGGAAATGAGAAAATTGTGCTGCAAAGGAGAGTAAGGTTTCCATGTTGCAACCATTGTAGTTACATCTTCCCATGCTTCCATGACTCCGGGGTCTGATTGTAACTGGCTTCATGCTCAATACTATATTAGAAGAGAGGTTTGCTGGAATTGAAAACACTGGAAAAGTATGTCCAACACCCTTCCTGGGTGAATAACAACCATGTTTGGAAGTAACAAACGATATGCCACCAAGCTAATACACTCATTGGCCTAATACGGATCAAGAAACAAGGAGCCAACTTAGGATTTGAACGCTTAATCAGAGATCCCTGCAGATATGGTTTTAACTCAAGATACACTTGGTCATTGACTGAAAATTGGTCTTCTCGTTGCTATCCAAATTGCAGTCGTACATTGCTGCGCTTACTGTAAATACTCCTTTAAGGCCCCGACCATAACATCTCTATCTTTTAACTGCTGATCAACTGTATCCACTGGCTATGAATCCCAAACTGATAGACATAGAACTTGTTCATTGACTCAAACGAAGAGGTACATGGCTAAGGGATAAGCTGAGAGTTCCCTGCCCCTCTTGAACACAAACTAAGATGATGGGAACGGCAACATGGAAGCACCAGCCATACAATTTGTTTATACCCGAAGAAGAATGAAGGGGAAGGGAGTTAGTTATACTTTTGAGGGTGCATGCACTAGAGTGAGCGCCATTTTTGTAATAGGTGGTCAGGGCAATAGGTTGTGAGGGAGGGTAATTTCTAAGGGGTAGAATCTCATCTGGAAATTCAGTCTTGTATTTTGGCCTTAGGGAGTTCATTCTTAAGGAGAGAGAGTTCTTGGCCTCTCAAAGAGATAAGTTTGCTTACTGTTTTGGGGTAATTAATTAAGTGTATTCCAGATAGGCTATCTGATGCCTATCATAAGACTTCACCCAAAAAGTGACTTTCTATCGTAATCTATCTCCTAAATACTTTTTGACCTATGCTTCCGTCCAATCTAACTAACTAGTTACCTTCGGTCTGCCCCTTAAATTCACATTAAATGCTAAGCCATTCCCCCCCTACTCTCTATATACTAACTTTTGGGGTCTGTCAGAATCCTTTTTACATGAGTCTATTGCAATTGCAAGTTAATCTATTTTGTATCATAGCTTAATCTTTTATCTGAATATTTTGATACCATTGACATGGGTACTTGAAAAAAACTGGAAGTTAATTTATTTTGCATCCTATTCTTCTTAAAATATTATGATAGAAACCAAATGGCTGAAATATAGTGAGAAAGATAAAAGGATAGGGCAACAATAATCTCCCAGTAATAAGAGGTACTTGGACCCTCCCTCTTAAGATCACTCAAGCCTAAACCACACCAAATATGACCTACCTTCATCCCTTCCCCTCACTCTATTTATAACAAATTCCTACTAATCAATTTCTTAACTAGTTACTAACTTACCTTTACTATTTTATTAATAATTCTAATCACCCCAAACGCATTCTATCATATTCCATCGGATTAAGGATTTTCTTTGCATGGTGTACATACATGTTGGTATGTTATGTTGCATCAATCTAGCTCACACAACCAAATAGCTATCCATTACTGTCTTGGATTTTTTAAAAGAAATTTTTTAGACCAATGGGCCAATGATTTCAAATGAATAAAGGTATTCCACTTCTGCTCTTGAAAAAATCCCTTTCAAACCTTTTTTTTGTTATTTTTCTTCAGATAGGGCTCTGTACTTCTTGGAGTTGACTTGTAAATTAATAGATGTACCTCCAGTATTTTCAGTTGCTATTGTCTTAGGTACTAAAACAAATGCCTTGGCCTTCTACCCAGGTTCTTGCTGGAAGCTATTTCTCAGTGGCTGGCGCCTTTGTGGGTCTTTTGAAGCCCGGGAGGATGAGCATGTTCGGAACGCTATTGGTAATTTGGGGTCTTGTTAAGGAAGGAATCCTTGGAAAACCAGTGAACACAGATCCTACAAAATCTGTTTATGTTTATCCTACAATGATTCTTGCCGTGATCTGTGCTTTCTCTTCGGTTAAGTATGATGTGAAGAAGGTAGTTAGGAGTGCCCCTGCTCGACCCATTGCAAAGCCTCTTCAAAGCTCATCAAAATCTAAGCTTAAG

mRNA sequence

ATGGCACCCCCCACGCCATCGTCGACATCAACAACATCCAGGGGTTGGGTCAGAAATCTTTCATCAATCGCATCTCGCATCTTCTTCTTCCTTATCATACTTCAGATCCCTCTCTTCAGGATCCCATGCAGATCTGGCATGTGTACTACTCCTTTGCACGTGACTTCATCCCAGTTGATTGCAAGTGAAGTCTTTCCTGCACCTGTTGTTAAGGCACTTCTCTATCCTGGAGCAATCGTGAATGGACTTGTTATGAACTTGACAGTTCCTAGCTGGAGTAACTTGTTAGACATATATAACTTGACCAATGTGAAGGAAGCCTCTGCTGTGACTGATCTTCAACGTTTAGAGGTTCTTGCTGGAAGCTATTTCTCAGTGGCTGGCGCCTTTGTGGGTCTTTTGAAGCCCGGGAGGATGAGCATGTTCGGAACGCTATTGGTAATTTGGGGTCTTGTTAAGGAAGGAATCCTTGGAAAACCAGTGAACACAGATCCTACAAAATCTGTTTATGTTTATCCTACAATGATTCTTGCCGTGATCTGTGCTTTCTCTTCGGTTAAGTATGATGTGAAGAAGGTAGTTAGGAGTGCCCCTGCTCGACCCATTGCAAAGCCTCTTCAAAGCTCATCAAAATCTAAGCTTAAG

Coding sequence (CDS)

ATGGCACCCCCCACGCCATCGTCGACATCAACAACATCCAGGGGTTGGGTCAGAAATCTTTCATCAATCGCATCTCGCATCTTCTTCTTCCTTATCATACTTCAGATCCCTCTCTTCAGGATCCCATGCAGATCTGGCATGTGTACTACTCCTTTGCACGTGACTTCATCCCAGTTGATTGCAAGTGAAGTCTTTCCTGCACCTGTTGTTAAGGCACTTCTCTATCCTGGAGCAATCGTGAATGGACTTGTTATGAACTTGACAGTTCCTAGCTGGAGTAACTTGTTAGACATATATAACTTGACCAATGTGAAGGAAGCCTCTGCTGTGACTGATCTTCAACGTTTAGAGGTTCTTGCTGGAAGCTATTTCTCAGTGGCTGGCGCCTTTGTGGGTCTTTTGAAGCCCGGGAGGATGAGCATGTTCGGAACGCTATTGGTAATTTGGGGTCTTGTTAAGGAAGGAATCCTTGGAAAACCAGTGAACACAGATCCTACAAAATCTGTTTATGTTTATCCTACAATGATTCTTGCCGTGATCTGTGCTTTCTCTTCGGTTAAGTATGATGTGAAGAAGGTAGTTAGGAGTGCCCCTGCTCGACCCATTGCAAAGCCTCTTCAAAGCTCATCAAAATCTAAGCTTAAG

Protein sequence

MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLIASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLAGSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVICAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK

Homology

[Close]

BLAST of MS001304 vs. NCBI nr
Match: XP_022131291.1 (uncharacterized protein LOC111004557 [Momordica charantia])

HSP 1 Score: 412.1 bits (1058), Expect = 2.8e-111
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60
           MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI
Sbjct: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180
           GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180

Query: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 216
           CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of MS001304 vs. NCBI nr
Match: XP_038883986.1 (uncharacterized protein LOC120074948 [Benincasa hispida])

HSP 1 Score: 385.6 bits (989), Expect = 2.9e-103
Identity = 200/215 (93.02%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60
           MA  T SSTS  S+ W+RNLSSIASRI+FFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTLSSTSAASKSWIRNLSSIASRIYFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSW+NL DIYNLTN+KEASAVTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWNNLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180
           GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDP K+VYVYPTMILAVI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPAKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 216
           CAFSSVKYDVKKVVR APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKVVRGAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of MS001304 vs. NCBI nr
Match: XP_016900009.1 (PREDICTED: uncharacterized protein LOC103488297 isoform X3 [Cucumis melo])

HSP 1 Score: 384.8 bits (987), Expect = 4.9e-103
Identity = 199/215 (92.56%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60
           MA  TPSSTST S+ WVRNLSSIASR++F LIILQIPLFRI CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS+L DIYNLTN+KEASAVTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180
           GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDP K+VYVYPTMILAVI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 216
           CAFSSVKYDVKKVVR APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKVVRGAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of MS001304 vs. NCBI nr
Match: XP_008445193.1 (PREDICTED: uncharacterized protein LOC103488297 isoform X4 [Cucumis melo] >XP_008445194.1 PREDICTED: uncharacterized protein LOC103488297 isoform X5 [Cucumis melo] >KAA0064936.1 uncharacterized protein E6C27_scaffold82G002540 [Cucumis melo var. makuwa])

HSP 1 Score: 384.8 bits (987), Expect = 4.9e-103
Identity = 199/215 (92.56%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60
           MA  TPSSTST S+ WVRNLSSIASR++F LIILQIPLFRI CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS+L DIYNLTN+KEASAVTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180
           GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDP K+VYVYPTMILAVI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 216
           CAFSSVKYDVKKVVR APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKVVRGAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of MS001304 vs. NCBI nr
Match: XP_008445192.1 (PREDICTED: uncharacterized protein LOC103488297 isoform X2 [Cucumis melo])

HSP 1 Score: 384.8 bits (987), Expect = 4.9e-103
Identity = 199/215 (92.56%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60
           MA  TPSSTST S+ WVRNLSSIASR++F LIILQIPLFRI CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS+L DIYNLTN+KEASAVTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180
           GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDP K+VYVYPTMILAVI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 216
           CAFSSVKYDVKKVVR APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKVVRGAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of MS001304 vs. ExPASy TrEMBL
Match: A0A6J1BP64 (uncharacterized protein LOC111004557 OS=Momordica charantia OX=3673 GN=LOC111004557 PE=4 SV=1)

HSP 1 Score: 412.1 bits (1058), Expect = 1.4e-111
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0


Query: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60
           MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI
Sbjct: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180
           GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180

Query: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 216
           CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of MS001304 vs. ExPASy TrEMBL
Match: A0A1S3BCZ0 (uncharacterized protein LOC103488297 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103488297 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.4e-103
Identity = 199/215 (92.56%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60
           MA  TPSSTST S+ WVRNLSSIASR++F LIILQIPLFRI CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS+L DIYNLTN+KEASAVTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180
           GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDP K+VYVYPTMILAVI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 216
           CAFSSVKYDVKKVVR APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKVVRGAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of MS001304 vs. ExPASy TrEMBL
Match: A0A5A7VF29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002540 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.4e-103
Identity = 199/215 (92.56%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60
           MA  TPSSTST S+ WVRNLSSIASR++F LIILQIPLFRI CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS+L DIYNLTN+KEASAVTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180
           GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDP K+VYVYPTMILAVI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 216
           CAFSSVKYDVKKVVR APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKVVRGAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of MS001304 vs. ExPASy TrEMBL
Match: A0A1S4DVJ9 (uncharacterized protein LOC103488297 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103488297 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.4e-103
Identity = 199/215 (92.56%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60
           MA  TPSSTST S+ WVRNLSSIASR++F LIILQIPLFRI CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS+L DIYNLTN+KEASAVTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180
           GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDP K+VYVYPTMILAVI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 216
           CAFSSVKYDVKKVVR APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKVVRGAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of MS001304 vs. ExPASy TrEMBL
Match: A0A1S3BC32 (uncharacterized protein LOC103488297 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488297 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.4e-103
Identity = 199/215 (92.56%), Postives = 206/215 (95.81%), Query Frame = 0


Query: 1   MAPPTPSSTSTTSRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLI 60
           MA  TPSSTST S+ WVRNLSSIASR++F LIILQIPLFRI CRSGMCTTPLHVTSSQLI
Sbjct: 1   MATSTPSSTSTASKSWVRNLSSIASRVYFLLIILQIPLFRISCRSGMCTTPLHVTSSQLI 60

Query: 61  ASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLA 120
           ASEVFPAPVVKALLYPGA+VNGLVMNLTVPSWS+L DIYNLTN+KEASAVTDLQRLEVLA
Sbjct: 61  ASEVFPAPVVKALLYPGAVVNGLVMNLTVPSWSDLFDIYNLTNIKEASAVTDLQRLEVLA 120

Query: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVI 180
           GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDP K+VYVYPTMILAVI
Sbjct: 121 GSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPVKAVYVYPTMILAVI 180

Query: 181 CAFSSVKYDVKKVVRSAPARPIAKPLQSSSKSKLK 216
           CAFSSVKYDVKKVVR APARPIAKPLQSSSKSKLK
Sbjct: 181 CAFSSVKYDVKKVVRGAPARPIAKPLQSSSKSKLK 215

[Close]

BLAST of MS001304 vs. TAIR 10
Match: AT5G11280.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80200.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 334.3 bits (856), Expect = 7.0e-92
Identity = 158/203 (77.83%), Postives = 188/203 (92.61%), Query Frame = 0


Query: 13  SRGWVRNLSSIASRIFFFLIILQIPLFRIPCRSGMCTTPLHVTSSQLIASEVFPAPVVKA 72
           S+GW++  +S+AS ++F LI+ QIPLFR+PCRSGMC++P+HVTSSQLI+SE+FP P++KA
Sbjct: 7   SKGWIKKWTSMASSVYFVLILFQIPLFRVPCRSGMCSSPIHVTSSQLISSEIFPVPMIKA 66

Query: 73  LLYPGAIVNGLVMNLTVPSWSNLLDIYNLTNVKEASAVTDLQRLEVLAGSYFSVAGAFVG 132
           LLYPGA+VNGL +N+T P W N+LDIYNLTNVKEASAVTDLQRLEVLAGSYFSVAGAFVG
Sbjct: 67  LLYPGAVVNGLAINMTFPKWENVLDIYNLTNVKEASAVTDLQRLEVLAGSYFSVAGAFVG 126

Query: 133 LLKPGRMSMFGTLLVIWGLVKEGILGKPVNTDPTKSVYVYPTMILAVICAFSSVKYDVKK 192
           LLKPGRMSMFG+LL++WGLVKEGILGKPVNTDP K+VYVYPTM+LA+ICAFS +KYD++K
Sbjct: 127 LLKPGRMSMFGSLLLVWGLVKEGILGKPVNTDPAKTVYVYPTMVLAMICAFSMIKYDLRK 186

Query: 193 VVRSAPARPIAKPLQSSSKSKLK 216
             R+APARPIAKPL SSSKSKLK
Sbjct: 187 ATRAAPARPIAKPLMSSSKSKLK 209

[Close]

BLAST of MS001304 vs. TAIR 10
Match: AT1G80200.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11280.1); Has 49 Blast hits to 49 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-31
Identity = 80/226 (35.40%), Postives = 122/226 (53.98%), Query Frame = 0


Query: 12  TSRGWVRNLSSIASRIFFFLIILQIPLFR-----------------------------IP 71
           + + W   +S IAS +F  LI+ QIPLFR                             + 
Sbjct: 4   SKKKWASIISVIASSLFSLLIVFQIPLFRVTLFNNAGALLDLDDRKKTDSILLGIEEIVA 63

Query: 72  CRSGMCTTPLHVTSSQLIASEVFPAPVVKALLYPGAIVNGLVMNLTVPSWSNLLDIYNLT 131
           CR+  C TPL V SS+LIA+++ P+ +VK LLYPGAI   L     +PS+ +L   Y+  
Sbjct: 64  CRNKSCETPLEVISSELIATDLIPSSLVKTLLYPGAITKSLFAGSKIPSYHHLFQFYSFD 123

Query: 132 NV-KEASAVTDLQRLEVLAGSYFSVAGAFVGLLKPGRMSMFGTLLVIWGLVKEGILGKPV 191
            + + +S  TD+  LEV AGS   + GA + L KP R++  GTLL+ WGL+++ +L    
Sbjct: 124 GMYRTSSFATDIHHLEVFAGSCLCLLGALLNLFKPTRITFIGTLLISWGLIRDILLLDSA 183

Query: 192 N---TDPTKSVYVYPTMILAVICAFSSVKYDVKKVVRSAPARPIAK 205
           +   +    SV VYPT+ LA + AF S++ DV+K++R   +  ++K
Sbjct: 184 HDWISPHRNSVRVYPTLFLASLSAFLSMRSDVRKIIRCCTSITLSK 229

The following BLAST results are available for this feature:

BLAST of MS001304 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131291.1	2.8e-111	100.00	uncharacterized protein LOC111004557 [Momordica charantia]	[more]
XP_038883986.1	2.9e-103	93.02	uncharacterized protein LOC120074948 [Benincasa hispida]	[more]
XP_016900009.1	4.9e-103	92.56	PREDICTED: uncharacterized protein LOC103488297 isoform X3 [Cucumis melo]	[more]
XP_008445193.1	4.9e-103	92.56	PREDICTED: uncharacterized protein LOC103488297 isoform X4 [Cucumis melo] >XP_00...	[more]
XP_008445192.1	4.9e-103	92.56	PREDICTED: uncharacterized protein LOC103488297 isoform X2 [Cucumis melo]	[more]

BLAST of MS001304 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001304 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BP64	1.4e-111	100.00	uncharacterized protein LOC111004557 OS=Momordica charantia OX=3673 GN=LOC111004...	[more]
A0A1S3BCZ0	2.4e-103	92.56	uncharacterized protein LOC103488297 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7VF29	2.4e-103	92.56	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S4DVJ9	2.4e-103	92.56	uncharacterized protein LOC103488297 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BC32	2.4e-103	92.56	uncharacterized protein LOC103488297 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of MS001304 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G11280.1	7.0e-92	77.83	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G80200.1	2.4e-31	35.40	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35288:SF1	TAIL FIBER	coord: 13..215
None	No IPR available	PANTHER	PTHR35288	TAIL FIBER	coord: 13..215

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001304.1	MS001304.1	mRNA