MS001294 (gene) Bitter gourd (TR) v1

Overview


Name	MS001294
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	GTP-binding nuclear protein
Location	scaffold36: 3037883 .. 3040823 (+)
RNA-Seq Expression	MS001294
Synteny	MS001294

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGCGCTGCCGAATCAGGCAACCGTAGACTACCCTAGTTTCAAGCTAGTAATAGTTGGAGATGGTGGAACAGGTACGGAAATTCATCCATTGCCTTCATTTTCTCGATATCTCCTTCAGCTCAATTTGCCATGTTCGTGTAGTTTTTAGAAACCAAAGCTATGATGCTACGCCGCTGGTTTAACTAAACCTTACCTTCTTTAGTGGAATGCGATTTTTTTTTCTTCCTCCGTTTCTCATGGCGTATAAATTAGACTGGCGATGTTGCAAAGTAGGTTTATTGACTAGGCGGTTCGTACTTCATATGTATTGTGTGATTAGAAATTTAGAGATTGTTAGATGTATGTATCTTTTTACAGACGTTTATTTATTGCGATGATGTCGTTTATCTCTAACTGAGGATTGTCTCCTGATCCAGGGAAGACGACCTTTGTTAAACGTCATCTTACTGGAGAGTTCGAGAAGAAATATGAACGTAAGAATGAACTATGTCGTTATTTATTGCTTGACGTTTCATGAATGTATTTGTAAGGTCGAAGTATTGTTGATATTTGGCCTCACTTGATTATGAATAGCGACGATTGGAGTTGAAGTTCATCCACTGGACTTCTTTACGAACTATGGAAAGATAAGGTTTTATTGCTGGGACACCGCTGGTCAGGAGAAGTTTGGTGGACTTAGAGATGGTTACTAGTAAGTTTTTATTTCTATAAGTATGCTGGTATTTTAGTAGTATGTATTATTGGAGTGGTAATTATCATTGTGGCTGACATCTATTGGATTTTCTAATACGTGCATGCACCTATACGTGTAATCATGTACAAATCTTTTTTGTCCCCATGTAGTGATTGGTTGGACTTTCTATAATAAAGTTTCATGTTTTAAAGCTTTTGTGATAGTCTTCAGGAATGTGTCCTCCAGATGAGGGATTTGATTACTGAATGTATCAAGTTGAAAGCTTATTAGTGCTTGTTTTTGGTCTTGTTTTCCCTGATGGAATTGCATTACAGTCTATTCAGTTCTGGTTTAATTAATATCCTGATATGCGATTTGAATTGTGATTATCTAATGATTTTGGCATCTCATCCTTGAGACGTTCATGTTCAACACAAATATCCAGTCTTAACTCTTTGGTAACTTTTTTGGTACTTGTATCAAGTATTTTTAATTTTTTTTTTCATTTCCTTACATGATGAACATAATGAGAGGTAATAGAAAATACTTAATTGTTCTCAATTAATCGATTCAAGTGTTTGGAAGGCATGTTTCTATTATATACTTTCATATTCTAATTCAATTGTTTAGAAAAAATTCTTTATTAACTTTTGTGAAAAAAGACACTGTTCATATTGTATAATACTAGTGATAATACAAGTATTATTCTTCTGTTTGAGTTTTCAACAGTTGGGTTATACTTCTGTTTGAGTTCTCACAAGCTTTACAAAAGAAAGCATTTCTTATCTCATATCTTCTTCCATATCGTACTTTAAATATTGATATTATAGGTTGAGATGCATGTTTTCGAACAGTTGCAAAATATACTGAGTAGTTCTCATGTTCATGTTCAATTCTTTTAGGATTTGATGCGGCAGAGTATGTTTGTGACTTCAACTAATTGATTAGTTTTCCATGTCTGTCCCACACCCCTAATCTATTTTGGTATTCTTGTGATTTCAATTAATTTGTTCTTATTTCTTCTGTTGCCTGTTCTGATTAGCTTATTTGTTTGCTCATTACTGTTTTGTTGTGACTTCTTCATTCTTATCTGTTCTGATAAGTTTAGTTCTTTGTTCTTAATCTCCTGTTTTATTTGTTCTAATAAGTGTATCTTTTCTAACTATGCTTGTTTTTTGTATTTTTCAGTATCCATGGGCAGTGTGCCATCATCATGTTTGATGTCACTGCTCGTTTGACATACAAGAACGTCCCAACATGGCACCGTGATCTCTGCAGGTATTGTATTTAAACCTTAAGGTTCTGTACCACGTAAAAACCCGGGGTTTGTTTAAAAAGGGTGTTTGAAATCTGTTTATTTCAAAGAAATTTCAAGCACTTGTCCACTCGGGGCCTTCTTAAAGTGTTGAAAACAATATTTATGATTGGATGAGATTTGTTGGATTCTAGTATCTTTTATGTTGTTATTAACGTGCTGGGCTATATATGTAAATGAATGAAAAAATAATGAGTACATGGAAGCAAAAGTTCAAAATAAATTCTTTCCATTACGCTCATCAATTACTGCGTTATTTTTATATTATGTTGGTCCTAAAGTTAGTTGGGATTGTTATGTATTAGGGTTTGCGAGAACATACCCATTGTGTTGTGTGGAAACAAGGTCGATGTGAAAAACAGGCAGGTTAAAGCAAAGCAGGTGACCTTTCACAGGAAGAAAAATCTCCAGTACTATGAAATTTCTGCGAAAAGTAATTACAACTTCGAGAAGCCCTTCTTATACCTTGCCAGAAAGCTTGCTGGGTAAGTTAAGTTGCTAGTGTGTGTTTGACGTAATCTCGATTGGTCTGTCCATGACTTTATCTTTTATTGGAACTTGCAGGAATACGGAACTTCACTTTGTAGAATCACCTGCCCTTGCTCCTCCTGAAGTTCAAATTGACTTGGCCGCACAAGCAAAGTAAGTAGCTCGATATTGATGTTACCTGATTAACATTGTCTTATAAATTTGCATGACAATGTAACTTAAGGTTATTTGATGTGAGTTTTTGGTGTAATGACTTGGCTCTCAAGGCTATGTTGTTTACCATCTGTCTAGCTTGGGAGTAGCGATCATAGGTTTAATTTCAAGACTCCTACTTGGTTTGGTCCACTGAAATTTGTTAGCATTAACTTAGGGCGATGATTTTTTTTGTGTTTCAGGCACGAAGCAGAGTTGGCAAATGCTCTTGAACAACCTCTTCCTGATGAAGACGACGATGCCTTTGAG

mRNA sequence

CAGGCGCTGCCGAATCAGGCAACCGTAGACTACCCTAGTTTCAAGCTAGTAATAGTTGGAGATGGTGGAACAGGGAAGACGACCTTTGTTAAACGTCATCTTACTGGAGAGTTCGAGAAGAAATATGAACCGACGATTGGAGTTGAAGTTCATCCACTGGACTTCTTTACGAACTATGGAAAGATAAGGTTTTATTGCTGGGACACCGCTGGTCAGGAGAAGTTTGGTGGACTTAGAGATGGTTACTATATCCATGGGCAGTGTGCCATCATCATGTTTGATGTCACTGCTCGTTTGACATACAAGAACGTCCCAACATGGCACCGTGATCTCTGCAGGGTTTGCGAGAACATACCCATTGTGTTGTGTGGAAACAAGGTCGATGTGAAAAACAGGCAGGTTAAAGCAAAGCAGGTGACCTTTCACAGGAAGAAAAATCTCCAGTACTATGAAATTTCTGCGAAAAGTAATTACAACTTCGAGAAGCCCTTCTTATACCTTGCCAGAAAGCTTGCTGGGAATACGGAACTTCACTTTGTAGAATCACCTGCCCTTGCTCCTCCTGAAGTTCAAATTGACTTGGCCGCACAAGCAAAGCACGAAGCAGAGTTGGCAAATGCTCTTGAACAACCTCTTCCTGATGAAGACGACGATGCCTTTGAG

Coding sequence (CDS)

CAGGCGCTGCCGAATCAGGCAACCGTAGACTACCCTAGTTTCAAGCTAGTAATAGTTGGAGATGGTGGAACAGGGAAGACGACCTTTGTTAAACGTCATCTTACTGGAGAGTTCGAGAAGAAATATGAACCGACGATTGGAGTTGAAGTTCATCCACTGGACTTCTTTACGAACTATGGAAAGATAAGGTTTTATTGCTGGGACACCGCTGGTCAGGAGAAGTTTGGTGGACTTAGAGATGGTTACTATATCCATGGGCAGTGTGCCATCATCATGTTTGATGTCACTGCTCGTTTGACATACAAGAACGTCCCAACATGGCACCGTGATCTCTGCAGGGTTTGCGAGAACATACCCATTGTGTTGTGTGGAAACAAGGTCGATGTGAAAAACAGGCAGGTTAAAGCAAAGCAGGTGACCTTTCACAGGAAGAAAAATCTCCAGTACTATGAAATTTCTGCGAAAAGTAATTACAACTTCGAGAAGCCCTTCTTATACCTTGCCAGAAAGCTTGCTGGGAATACGGAACTTCACTTTGTAGAATCACCTGCCCTTGCTCCTCCTGAAGTTCAAATTGACTTGGCCGCACAAGCAAAGCACGAAGCAGAGTTGGCAAATGCTCTTGAACAACCTCTTCCTGATGAAGACGACGATGCCTTTGAG

Protein sequence

QALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVESPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE

Homology

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BLAST of MS001294 vs. NCBI nr
Match: XP_022131432.1 (GTP-binding nuclear protein Ran-3-like [Momordica charantia])

HSP 1 Score: 460.3 bits (1183), Expect = 9.4e-126
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK
Sbjct: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE
Sbjct: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 221

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BLAST of MS001294 vs. NCBI nr
Match: XP_038884642.1 (GTP-binding nuclear protein Ran1A-like [Benincasa hispida] >BAP11913.1 Ran-GTPase [Citrullus lanatus] >BAR79437.1 Ran-GTPase [Citrullus lanatus])

HSP 1 Score: 449.9 bits (1156), Expect = 1.3e-122
Identity = 215/220 (97.73%), Postives = 216/220 (98.18%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK
Sbjct: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGN ELHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNPELHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQIDLAAQA+HEAELA A  QPLPDEDDDAFE
Sbjct: 182 SPALAPPEVQIDLAAQAQHEAELAQAAAQPLPDEDDDAFE 221

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BLAST of MS001294 vs. NCBI nr
Match: KAG7020371.1 (GTP-binding nuclear protein Ran-3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 446.8 bits (1148), Expect = 1.1e-121
Identity = 212/221 (95.93%), Postives = 217/221 (98.19%), Query Frame = 0


Query: 1   QALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYG 60
           QALP+QATVDYPSFKLVIVGDGGTGKTTFVKRH+TGEFEKKYEPTIGVEVHPLDFFTNYG
Sbjct: 8   QALPSQATVDYPSFKLVIVGDGGTGKTTFVKRHITGEFEKKYEPTIGVEVHPLDFFTNYG 67

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 68  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 127

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFV
Sbjct: 128 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFV 187

Query: 181 ESPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           ESPALAPPEV+I+LA QA+HEAELA A  QPLPDEDDDAFE
Sbjct: 188 ESPALAPPEVEINLAEQAQHEAELAQAAAQPLPDEDDDAFE 228

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BLAST of MS001294 vs. NCBI nr
Match: XP_022996825.1 (GTP-binding nuclear protein Ran-3-like [Cucurbita maxima] >KAG6598587.1 GTP-binding nuclear protein Ran-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 446.8 bits (1148), Expect = 1.1e-121
Identity = 213/220 (96.82%), Postives = 215/220 (97.73%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK
Sbjct: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTEL FVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELQFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQID+A QA+HEAELA A  QPLPDEDDDAFE
Sbjct: 182 SPALAPPEVQIDMAVQAQHEAELAQAAAQPLPDEDDDAFE 221

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BLAST of MS001294 vs. NCBI nr
Match: XP_022131431.1 (GTP-binding nuclear protein Ran-3-like [Momordica charantia])

HSP 1 Score: 446.4 bits (1147), Expect = 1.4e-121
Identity = 214/220 (97.27%), Postives = 215/220 (97.73%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK
Sbjct: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTEL FVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELQFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQIDLAAQA+HEAEL  A  QPLPDEDDDAFE
Sbjct: 182 SPALAPPEVQIDLAAQAQHEAELVLAAAQPLPDEDDDAFE 221

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BLAST of MS001294 vs. ExPASy Swiss-Prot
Match: Q8H156 (GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana OX=3702 GN=RAN3 PE=1 SV=2)

HSP 1 Score: 436.0 bits (1120), Expect = 2.5e-121
Identity = 208/220 (94.55%), Postives = 211/220 (95.91%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQ TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN GK
Sbjct: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG+  LHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQIDLAAQ +HEAELA A  QPLPD+DDD FE
Sbjct: 182 SPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

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BLAST of MS001294 vs. ExPASy Swiss-Prot
Match: P38547 (GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum OX=4081 GN=RAN2 PE=2 SV=1)

HSP 1 Score: 434.1 bits (1115), Expect = 9.4e-121
Identity = 208/220 (94.55%), Postives = 211/220 (95.91%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQ TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN GK
Sbjct: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG+  LHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQIDLAAQA HE EL  AL QPLPD+DD+AFE
Sbjct: 182 SPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221

[Close]

BLAST of MS001294 vs. ExPASy Swiss-Prot
Match: P38546 (GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum OX=4081 GN=RAN1 PE=2 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 8.0e-120
Identity = 206/220 (93.64%), Postives = 209/220 (95.00%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQ TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN GK
Sbjct: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG+  LHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEV IDLAAQA HE EL  A  QPLPD+DD+AFE
Sbjct: 182 SPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221

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BLAST of MS001294 vs. ExPASy Swiss-Prot
Match: P38548 (GTP-binding nuclear protein Ran/TC4 OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 8.0e-120
Identity = 204/220 (92.73%), Postives = 209/220 (95.00%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQ TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN GK
Sbjct: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG+  LHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQID+A Q +HE E+  A  QPLPD+DDDAFE
Sbjct: 182 SPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221

[Close]

BLAST of MS001294 vs. ExPASy Swiss-Prot
Match: P41917 (GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana OX=3702 GN=RAN2 PE=1 SV=3)

HSP 1 Score: 429.5 bits (1103), Expect = 2.3e-119
Identity = 204/220 (92.73%), Postives = 211/220 (95.91%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQ TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN GK
Sbjct: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG+  LHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEV +D+AAQ ++EA+LA A  QPLPD+DDDAFE
Sbjct: 182 SPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

[Close]

BLAST of MS001294 vs. ExPASy TrEMBL
Match: A0A6J1BR00 (GTP-binding nuclear protein OS=Momordica charantia OX=3673 GN=LOC111004646 PE=3 SV=1)

HSP 1 Score: 460.3 bits (1183), Expect = 4.5e-126
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK
Sbjct: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE
Sbjct: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 221

[Close]

BLAST of MS001294 vs. ExPASy TrEMBL
Match: A0A068PVW7 (GTP-binding nuclear protein OS=Citrullus lanatus OX=3654 GN=CLRan2 PE=2 SV=1)

HSP 1 Score: 449.9 bits (1156), Expect = 6.1e-123
Identity = 215/220 (97.73%), Postives = 216/220 (98.18%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK
Sbjct: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGN ELHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNPELHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQIDLAAQA+HEAELA A  QPLPDEDDDAFE
Sbjct: 182 SPALAPPEVQIDLAAQAQHEAELAQAAAQPLPDEDDDAFE 221

[Close]

BLAST of MS001294 vs. ExPASy TrEMBL
Match: A0A6J1K7U8 (GTP-binding nuclear protein OS=Cucurbita maxima OX=3661 GN=LOC111491953 PE=3 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 5.2e-122
Identity = 213/220 (96.82%), Postives = 215/220 (97.73%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK
Sbjct: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTEL FVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELQFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQID+A QA+HEAELA A  QPLPDEDDDAFE
Sbjct: 182 SPALAPPEVQIDMAVQAQHEAELAQAAAQPLPDEDDDAFE 221

[Close]

BLAST of MS001294 vs. ExPASy TrEMBL
Match: A0A6J1BPH5 (GTP-binding nuclear protein OS=Momordica charantia OX=3673 GN=LOC111004645 PE=3 SV=1)

HSP 1 Score: 446.4 bits (1147), Expect = 6.8e-122
Identity = 214/220 (97.27%), Postives = 215/220 (97.73%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK
Sbjct: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTEL FVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELQFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQIDLAAQA+HEAEL  A  QPLPDEDDDAFE
Sbjct: 182 SPALAPPEVQIDLAAQAQHEAELVLAAAQPLPDEDDDAFE 221

[Close]

BLAST of MS001294 vs. ExPASy TrEMBL
Match: A0A6J1HAZ9 (GTP-binding nuclear protein OS=Cucurbita moschata OX=3662 GN=LOC111462434 PE=3 SV=1)

HSP 1 Score: 445.3 bits (1144), Expect = 1.5e-121
Identity = 212/220 (96.36%), Postives = 215/220 (97.73%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQATV+YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK
Sbjct: 2   ALPNQATVEYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTEL FVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELQFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQID+A QA+HEAELA A  QPLPDEDDDAFE
Sbjct: 182 SPALAPPEVQIDMAVQAQHEAELAQAAAQPLPDEDDDAFE 221

[Close]

BLAST of MS001294 vs. TAIR 10
Match: AT5G55190.1 (RAN GTPase 3 )

HSP 1 Score: 436.0 bits (1120), Expect = 1.8e-122
Identity = 208/220 (94.55%), Postives = 211/220 (95.91%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQ TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN GK
Sbjct: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG+  LHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEVQIDLAAQ +HEAELA A  QPLPD+DDD FE
Sbjct: 182 SPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

[Close]

BLAST of MS001294 vs. TAIR 10
Match: AT5G20020.1 (RAS-related GTP-binding nuclear protein 2 )

HSP 1 Score: 429.5 bits (1103), Expect = 1.7e-120
Identity = 204/220 (92.73%), Postives = 211/220 (95.91%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQ TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN GK
Sbjct: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG+  LHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           SPALAPPEV +D+AAQ ++EA+LA A  QPLPD+DDDAFE
Sbjct: 182 SPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

[Close]

BLAST of MS001294 vs. TAIR 10
Match: AT5G20010.1 (RAS-related nuclear protein-1 )

HSP 1 Score: 426.4 bits (1095), Expect = 1.4e-119
Identity = 203/220 (92.27%), Postives = 208/220 (94.55%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQ TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN GK
Sbjct: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG+  LHFVE
Sbjct: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFVE 181

Query: 182 SPALAPPEVQIDLAAQAKHEAELANALEQPLPDEDDDAFE 222
           +PALAPPEV ID+A Q K+EAEL  A  QPLPD+DDD FE
Sbjct: 182 TPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

[Close]

BLAST of MS001294 vs. TAIR 10
Match: AT5G55080.1 (ras-related nuclear protein 4 )

HSP 1 Score: 304.7 bits (779), Expect = 6.1e-83
Identity = 142/192 (73.96%), Postives = 164/192 (85.42%), Query Frame = 0


Query: 2   ALPNQATVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGK 61
           ALPNQ  VD P+FKL+IVGDGGTGKTTF+KRHLTGEFE   EPT+GV+++PLDFFTN GK
Sbjct: 2   ALPNQQNVDLPTFKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGK 61

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV 121
           IRF CWDTAGQEK+ GL+D YYIHGQCAIIMFDVTAR TY N+  W+RDL RVC+NIPIV
Sbjct: 62  IRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLRRVCKNIPIV 121

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGNTELHFVE 181
           LCGNKVDV +RQ+K K V++HRKK LQYYE+SAK+N NFEKPFLYLAR++AG+ +L FVE
Sbjct: 122 LCGNKVDVPSRQIKPKHVSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRIAGDAKLSFVE 181

Query: 182 SPALAPPEVQID 194
           S     PE QID
Sbjct: 182 S-----PEAQID 188

[Close]

BLAST of MS001294 vs. TAIR 10
Match: AT4G39890.1 (RAB GTPase homolog H1C )

HSP 1 Score: 104.4 bits (259), Expect = 1.2e-22
Identity = 60/164 (36.59%), Postives = 87/164 (53.05%), Query Frame = 0


Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNYGKIRFYCWDTAGQE 73
           FKLV +GD   GKT+ + R +  +F+  Y+PTIG++      +     +R   WDTAGQE
Sbjct: 10  FKLVFLGDQSVGKTSIITRFMYDKFDTTYQPTIGIDFLSKTMYLEDRTVRLQLWDTAGQE 69

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD-VK 133
           +F  L   Y      AI+++DV+ R T+ N   W  D+ R     N+ IVL GNK D V+
Sbjct: 70  RFRSLIPSYIRDSSVAIVVYDVSNRQTFLNTSKWIEDVHRERGQSNVIIVLVGNKTDLVE 129

Query: 134 NRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 174
            RQV   +     K+  + + E SAK N+N +  F  +A  L G
Sbjct: 130 KRQVSISEGEDKGKEYGVMFIETSAKENFNIKALFRKIAAALPG 173

The following BLAST results are available for this feature:

BLAST of MS001294 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131432.1	9.4e-126	100.00	GTP-binding nuclear protein Ran-3-like [Momordica charantia]	[more]
XP_038884642.1	1.3e-122	97.73	GTP-binding nuclear protein Ran1A-like [Benincasa hispida] >BAP11913.1 Ran-GTPas...	[more]
KAG7020371.1	1.1e-121	95.93	GTP-binding nuclear protein Ran-3, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022996825.1	1.1e-121	96.82	GTP-binding nuclear protein Ran-3-like [Cucurbita maxima] >KAG6598587.1 GTP-bind...	[more]
XP_022131431.1	1.4e-121	97.27	GTP-binding nuclear protein Ran-3-like [Momordica charantia]	[more]

BLAST of MS001294 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H156	2.5e-121	94.55	GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana OX=3702 GN=RAN3 PE=1 S...	[more]
P38547	9.4e-121	94.55	GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum OX=4081 GN=RAN2 PE=2 SV...	[more]
P38546	8.0e-120	93.64	GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum OX=4081 GN=RAN1 PE=2 SV...	[more]
P38548	8.0e-120	92.73	GTP-binding nuclear protein Ran/TC4 OS=Vicia faba OX=3906 PE=2 SV=1	[more]
P41917	2.3e-119	92.73	GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana OX=3702 GN=RAN2 PE=1 S...	[more]

BLAST of MS001294 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BR00	4.5e-126	100.00	GTP-binding nuclear protein OS=Momordica charantia OX=3673 GN=LOC111004646 PE=3 ...	[more]
A0A068PVW7	6.1e-123	97.73	GTP-binding nuclear protein OS=Citrullus lanatus OX=3654 GN=CLRan2 PE=2 SV=1	[more]
A0A6J1K7U8	5.2e-122	96.82	GTP-binding nuclear protein OS=Cucurbita maxima OX=3661 GN=LOC111491953 PE=3 SV=...	[more]
A0A6J1BPH5	6.8e-122	97.27	GTP-binding nuclear protein OS=Momordica charantia OX=3673 GN=LOC111004645 PE=3 ...	[more]
A0A6J1HAZ9	1.5e-121	96.36	GTP-binding nuclear protein OS=Cucurbita moschata OX=3662 GN=LOC111462434 PE=3 S...	[more]

BLAST of MS001294 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G55190.1	1.8e-122	94.55	RAN GTPase 3	[more]
AT5G20020.1	1.7e-120	92.73	RAS-related GTP-binding nuclear protein 2	[more]
AT5G20010.1	1.4e-119	92.27	RAS-related nuclear protein-1	[more]
AT5G55080.1	6.1e-83	73.96	ras-related nuclear protein 4	[more]
AT4G39890.1	1.2e-22	36.59	RAB GTPase homolog H1C	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002041	Ran GTPase	PRINTS	PR00627	GTPRANTC4	coord: 74..92 score: 89.88 coord: 94..115 score: 86.19 coord: 130..148 score: 81.38 coord: 27..41 score: 95.13 coord: 168..190 score: 71.57
IPR002041	Ran GTPase	PANTHER	PTHR24071	RAN GTPASE	coord: 2..221
IPR002041	Ran GTPase	PROSITE	PS51418	RAN	coord: 7..171 score: 29.927345
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 19..220 e-value: 7.1E-164 score: 560.4
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 11..174 e-value: 4.0E-18 score: 76.2
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 14..174 e-value: 2.6E-28 score: 110.0
None	No IPR available	PANTHER	PTHR24071:SF19	GTP-BINDING NUCLEAR PROTEIN	coord: 2..221
None	No IPR available	PROSITE	PS51419	RAB	coord: 8..206 score: 19.833752
None	No IPR available	CDD	cd00877	Ran	coord: 14..179 e-value: 3.30068E-132 score: 367.012
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 16..170 e-value: 1.1E-8 score: -7.5
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 15..171 e-value: 4.1E-50 score: 169.6
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 5..208 score: 9.63636
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 5..219 e-value: 1.1E-68 score: 232.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 14..195
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 14..164 e-value: 1.3E-24 score: 84.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001294.1	MS001294.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006913	nucleocytoplasmic transport
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding