MS001227 (gene) Bitter gourd (TR) v1

Overview


Name	MS001227
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	la protein 1
Location	scaffold36: 2451533 .. 2455240 (-)
RNA-Seq Expression	MS001227
Synteny	MS001227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACCTCTTCTCTCGATCAAGAAACCGCGAAGAAAGTGCTTCGTCAGGTCAAATGTGTTCAAAATTCCTCCTTCTTCCTAGTTCTATGTGCTTTTGTACTTTTTTTATTTATTTTTTTTTTAACATTCATCGGTTCGATGTTTCTTCTGCAGGTCGAGTTCTATTTCAGCGACAGTAATCTTCCGAGAGACGGTTTTCTTAAAACTACTGTCAATGAAAGCCCTGATGGAAGTATCCTTCACCTTTTGATGATATGTGTTTCTGCGTTTTTCATATTTGTTTCTGTTTAATTCACGGCCTGATTAAGCATTGCCTCTTTGCAATTCGCGTTTCCGTTTTGGTTGTTTGAAAGTTTAATTTGGATTATTGTTATTTGTTGGGCATTCCTACGAAGTTCTTTCGTTGATCTTAACTGTGCAATTACAGTGGTTAATTTGTCTTTAATATGTTCGTTTACTCGGATGAGAAACCATCTTAAATTGGGGGATGTGGGCCCAGACGATATTTCAGAAGATACTGTAAAGGCCGTCGCTGAAACTCTGAGAAGCTCTCCAACTATCAAAGTTTCTGAAGATGGTTAGGATTTTCGCGTATAAATGCTGTAATTTGTCATTTAACATAATTGCTTATATTGATGATATTGAATCCTCGAATTTATGAAAATGGCAAAAATGCTGATGAGAATATCAACAGTGGTCCATTGCTCGGATTAGCTCCTGCTATGTAATTAGCTGTTGTATCTGATTCCAATTTACGGGTTGTTATGGACTTTTTAGTTTATCATTATATAGATTTTGGTATTGTGAATGGTTCAGGGAAGAAGATTGGTAGAACTACTGAACTCTCAAAACCTGAGGAGTTAATAGAACAATTGGATGTTAGAACCATAGCTGCATCGCCATTTGAATACAACGTCAAGCTTGAAGATGTGGAAGCTTTCTTTGGTCAAGTTGCAAAGGTAGATTTTTTATTCGACACTGATGTTAATTTCTATATTGTATTCGTGGTGATTTGTTGGTATCATATTACATGTTATGTTGTTGTTTCATCATTAGCTTCAGAATGTCATTGGTTTTAGCTAGCTTATCGGTGTAATCACTTTTGAATCATTTTGTAGTAGCTTTGTCTTCTGAATAATTGTGAAAATTTTGTAGTAGCTTCGTCTTCTGAACAATTGTGAAAATTTTAGACTATGAAATGTGAAATTGTGATTCCTCCTTATTTCTTTGATTTCAGACTTTAAGCTGATTTTTTTTTAATCTTGTTGTGCATAATACACTAGATACTGAAATCTTAATCTGTAAGTCTAAATTGGGTTTTTTACCACGACATTTTGCAGGATATGTATATTTATCACTGCTATTGTTAAATATTAGAACTTCCCACTGAATTTCAGGTTAACAGTGTGAGGCTGCCCCGTCATGTTGCAGATAAACGGGTTTTCTGTGGAACTGCATTGGTTGAGTTTTCTAGCGAAGAAGATGCAGAAAAAGCTTTGAAGGAAAGTTTGCTTTATGCCGGTGCCAAGTTAGAATTGAAACCAAAGTAAGGACATTGTTGGAATACAATAAGTAACTTTTCATTCTGACATTTTTTGAAAGTCCATTGCCGGTAAAATAGTAATATCCTAAATTATTAATTATCCCATTCCCTATTATGTTTGTAAAGACTATTTCTATTTCAGGAAGGATTTTGACGAGGAGAGAGGAAAAGAGGCTGAGAAGTTTGAAAGTTCACGCTCAACCTCAAATTCAAATCATAAGAATAATACTTCCTCGGAACCATAGTAAGTATAAATTAGACTTGTATAGCTGGTATTGTTAGCCTATGACTTTTCTTCTGTTTCACACATCTTAATCGTACTCATGATGATTACAGTTACCCGAAAGGATTGATTGTTGCCTTTACATTGAAAAGTGTGTCATCTGGAACTTCTGATGAAGAAAATGGATCTCATAATGTAGCCACTGATATTACTGAATGCAAGGTAGATGAGGGATTAGACTCTTCTAAGAATGACTCTGAGAAAACTGAGCAAACAGCTGAAGCAAATGTGAGTAAGGATGGTGAAATCTCTAAGAGTTCTGAGAAAAATGAAGAAGTTGATAAGAATAACGATTCAGGCAATGAAGAAAAACCTGAATTGGGAGAGCAGTCTAATGAACATGAAGAGGCTGGGGAAAAACCTACAGCTGGTGCATCCATAAACAACAAGAATGTTGTTTCTCGTGAGGATTTGAAGGTTATCTTTCAGAAGTTTGGATCCGTCAAGGTATCTCTAAGGTCTTCCTTCTAGAATTAGAAATTTTCACAACGTTTAATTGAAATTTGCTCTCTACTTTATCTACTAGTTTATCTTCCCTTCCCCGTTTGTGCTTTTTATTGGGCATGGGGGGACCTAAGTCTGCTTACATCATTCTTATTCTTTTTCATTTGTGCTACCGGTAAATTCAAACCTTAGTATGCAGGTTTAGAACTGTAAAAGGGATCTTGTTCCATGAATGGATGTTTTCTCTTTTCTTCTATTTTTCTTTGTAATAACAACTTTACCTATTTTTCTTGACTGGACATCCAAAGACCGTTTGGACTCTGATTTTCCTTTGGATGATGGCATCAATTTTCTATTTTCAGTTCTTTTATGCTGCTACTTAAATAACTAAGAAAAAGATCGTCGGAGTTGGATTTTATTAAAGGCTATCCATCCTGACGCCTCTTATGTTTTCCATTTTCCCCCTCTCTTCGTTTGTTGGGTTTGTGAAGTACATTGATTTTAAGATTGGAGAAGAGTCGGGTTATATCAGGTTTGATGATCCTGAAGCTGCCCAGAAAGCTCGTGCGGCTGCCGTACTTGCTGAACAAGGGGGACTGGTAGTGAAAAATTGTATAGCCGCTTTAGAACCAGTGTCAGGTACCATATGAATTTCACTGTTCTTTGAACAATGAATAAAGTATTAGCTACAGTTGATGTCAATGCTTTCTTTCTATCTCGTTAATCTTGAACGTGTTTTTTTAATGAAGTAAACATACTGCACAGGGTAGAATTTATCTCTGTTCTCTCGGTTAATAAACTTGGATCCGACCCAAAGTTTATCAACTCAACTCCATTTTTACTTTGGATGTGTTCTGTTTTTATTGTCTCATAATCTGCCGAGAATCAACAGTTTAGTTCTTTTGCTTTAAATTATTAAACATGAAAACAACAATGCGGATAAAATAATTTCAATCGTTCAGTGTGGTTATGGTCGAGCATTTCTAATGTGATAAAACTGAATTTGGAGGCATGGATGCTTGTAATGTTGTAATTTCCATTATCTTCAATGGGACTTTTGGGTTAGTAAATTTGTTCCGTATTTCTTGTGTGAATAGTATCCATCTCAATATCGGATATACTTCTTTGATCTCAGGTGAGGCTGAGAAGGAGTATTGGAGGCTACTCCGCAGCAGCCAAGAAAAGCGTTACCGTGATTTCAAGGGCGGCAACCGTGGAAGGTTTGCATTATAAATGAAGAATAGTTCTCTGAATTGTTGTTGAAATTCCTATTGAATATTCATTGTTCACTTGGGTTATTGCATAATATTGAATATTCATTGTTTGTTCTGCTTCCTATTTCTATAGGGGTGGTAAATTCCATAGAGGTGGAAAGCATGCGCGGTCAAGAGGGCATGACAACGATCGAGGTCGCCCTAATAAGGCTCAAAGGGTG

mRNA sequence

ATGGACACCTCTTCTCTCGATCAAGAAACCGCGAAGAAAGTGCTTCGTCAGGTCGAGTTCTATTTCAGCGACAGTAATCTTCCGAGAGACGGTTTTCTTAAAACTACTGTCAATGAAAGCCCTGATGGAATGGTTAATTTGTCTTTAATATGTTCGTTTACTCGGATGAGAAACCATCTTAAATTGGGGGATGTGGGCCCAGACGATATTTCAGAAGATACTGTAAAGGCCGTCGCTGAAACTCTGAGAAGCTCTCCAACTATCAAAGTTTCTGAAGATGGGAAGAAGATTGGTAGAACTACTGAACTCTCAAAACCTGAGGAGTTAATAGAACAATTGGATGTTAGAACCATAGCTGCATCGCCATTTGAATACAACGTCAAGCTTGAAGATGTGGAAGCTTTCTTTGGTCAAGTTGCAAAGGTTAACAGTGTGAGGCTGCCCCGTCATGTTGCAGATAAACGGGTTTTCTGTGGAACTGCATTGGTTGAGTTTTCTAGCGAAGAAGATGCAGAAAAAGCTTTGAAGGAAAGTTTGCTTTATGCCGGTGCCAAGTTAGAATTGAAACCAAAGAAGGATTTTGACGAGGAGAGAGGAAAAGAGGCTGAGAAGTTTGAAAGTTCACGCTCAACCTCAAATTCAAATCATAAGAATAATACTTCCTCGGAACCATATTACCCGAAAGGATTGATTGTTGCCTTTACATTGAAAAGTGTGTCATCTGGAACTTCTGATGAAGAAAATGGATCTCATAATGTAGCCACTGATATTACTGAATGCAAGGTAGATGAGGGATTAGACTCTTCTAAGAATGACTCTGAGAAAACTGAGCAAACAGCTGAAGCAAATGTGAGTAAGGATGGTGAAATCTCTAAGAGTTCTGAGAAAAATGAAGAAGTTGATAAGAATAACGATTCAGGCAATGAAGAAAAACCTGAATTGGGAGAGCAGTCTAATGAACATGAAGAGGCTGGGGAAAAACCTACAGCTGGTGCATCCATAAACAACAAGAATGTTGTTTCTCGTGAGGATTTGAAGGTTATCTTTCAGAAGTTTGGATCCGTCAAGTACATTGATTTTAAGATTGGAGAAGAGTCGGGTTATATCAGGTTTGATGATCCTGAAGCTGCCCAGAAAGCTCGTGCGGCTGCCGTACTTGCTGAACAAGGGGGACTGGTAGTGAAAAATTGTATAGCCGCTTTAGAACCAGTGTCAGGTGAGGCTGAGAAGGAGTATTGGAGGCTACTCCGCAGCAGCCAAGAAAAGCGTTACCGTGATTTCAAGGGCGGCAACCGTGGAAGGGGTGGTAAATTCCATAGAGGTGGAAAGCATGCGCGGTCAAGAGGGCATGACAACGATCGAGGTCGCCCTAATAAGGCTCAAAGGGTG

Coding sequence (CDS)

ATGGACACCTCTTCTCTCGATCAAGAAACCGCGAAGAAAGTGCTTCGTCAGGTCGAGTTCTATTTCAGCGACAGTAATCTTCCGAGAGACGGTTTTCTTAAAACTACTGTCAATGAAAGCCCTGATGGAATGGTTAATTTGTCTTTAATATGTTCGTTTACTCGGATGAGAAACCATCTTAAATTGGGGGATGTGGGCCCAGACGATATTTCAGAAGATACTGTAAAGGCCGTCGCTGAAACTCTGAGAAGCTCTCCAACTATCAAAGTTTCTGAAGATGGGAAGAAGATTGGTAGAACTACTGAACTCTCAAAACCTGAGGAGTTAATAGAACAATTGGATGTTAGAACCATAGCTGCATCGCCATTTGAATACAACGTCAAGCTTGAAGATGTGGAAGCTTTCTTTGGTCAAGTTGCAAAGGTTAACAGTGTGAGGCTGCCCCGTCATGTTGCAGATAAACGGGTTTTCTGTGGAACTGCATTGGTTGAGTTTTCTAGCGAAGAAGATGCAGAAAAAGCTTTGAAGGAAAGTTTGCTTTATGCCGGTGCCAAGTTAGAATTGAAACCAAAGAAGGATTTTGACGAGGAGAGAGGAAAAGAGGCTGAGAAGTTTGAAAGTTCACGCTCAACCTCAAATTCAAATCATAAGAATAATACTTCCTCGGAACCATATTACCCGAAAGGATTGATTGTTGCCTTTACATTGAAAAGTGTGTCATCTGGAACTTCTGATGAAGAAAATGGATCTCATAATGTAGCCACTGATATTACTGAATGCAAGGTAGATGAGGGATTAGACTCTTCTAAGAATGACTCTGAGAAAACTGAGCAAACAGCTGAAGCAAATGTGAGTAAGGATGGTGAAATCTCTAAGAGTTCTGAGAAAAATGAAGAAGTTGATAAGAATAACGATTCAGGCAATGAAGAAAAACCTGAATTGGGAGAGCAGTCTAATGAACATGAAGAGGCTGGGGAAAAACCTACAGCTGGTGCATCCATAAACAACAAGAATGTTGTTTCTCGTGAGGATTTGAAGGTTATCTTTCAGAAGTTTGGATCCGTCAAGTACATTGATTTTAAGATTGGAGAAGAGTCGGGTTATATCAGGTTTGATGATCCTGAAGCTGCCCAGAAAGCTCGTGCGGCTGCCGTACTTGCTGAACAAGGGGGACTGGTAGTGAAAAATTGTATAGCCGCTTTAGAACCAGTGTCAGGTGAGGCTGAGAAGGAGTATTGGAGGCTACTCCGCAGCAGCCAAGAAAAGCGTTACCGTGATTTCAAGGGCGGCAACCGTGGAAGGGGTGGTAAATTCCATAGAGGTGGAAAGCATGCGCGGTCAAGAGGGCATGACAACGATCGAGGTCGCCCTAATAAGGCTCAAAGGGTG

Protein sequence

MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHLKLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAASPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLLYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSVSSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSEKNEEVDKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFGSVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYWRLLRSSQEKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV

Homology

[Close]

BLAST of MS001227 vs. NCBI nr
Match: XP_022131859.1 (la protein 1 [Momordica charantia])

HSP 1 Score: 871.7 bits (2251), Expect = 2.8e-249
Identity = 462/463 (99.78%), Postives = 462/463 (99.78%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL
Sbjct: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60

Query: 61  KLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAA 120
           KLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAA
Sbjct: 61  KLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAA 120

Query: 121 SPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLL 180
           SPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLL
Sbjct: 121 SPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLL 180

Query: 181 YAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSVS 240
           YAGAKLELKPKKDFDEER KEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSVS
Sbjct: 181 YAGAKLELKPKKDFDEERAKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSVS 240

Query: 241 SGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSEKNEEV 300
           SGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSEKNEEV
Sbjct: 241 SGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSEKNEEV 300

Query: 301 DKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFGSVKYIDF 360
           DKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFGSVKYIDF
Sbjct: 301 DKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFGSVKYIDF 360

Query: 361 KIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYWRLLRSSQ 420
           KIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYWRLLRSSQ
Sbjct: 361 KIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYWRLLRSSQ 420

Query: 421 EKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 464
           EKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV
Sbjct: 421 EKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 463

[Close]

BLAST of MS001227 vs. NCBI nr
Match: XP_023537626.1 (la protein 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 684.9 bits (1766), Expect = 4.9e-193
Identity = 375/470 (79.79%), Postives = 411/470 (87.45%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           M+ SSLDQETAKKVLRQVEFYFSDSNLPRDGFLK T+  SPDGMV+LSL+CSF+RM+ HL
Sbjct: 1   MENSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKKTIGASPDGMVDLSLVCSFSRMKGHL 60

Query: 61  KLG-DVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIA 120
            L  DV PD I EDTVKAVAETL+SS TIKVSEDGKKIGR  ELSKPEE+IEQLD RTIA
Sbjct: 61  HLAQDVKPDAIPEDTVKAVAETLKSSSTIKVSEDGKKIGRIAELSKPEEMIEQLDDRTIA 120

Query: 121 ASPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESL 180
           ASPF+Y+VKLEDVEAFFGQ+AKVNSVRLPRHV+DKRVFCGTALVEFS+EEDAEK L ESL
Sbjct: 121 ASPFQYDVKLEDVEAFFGQIAKVNSVRLPRHVSDKRVFCGTALVEFSAEEDAEKVLAESL 180

Query: 181 LYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSV 240
           LYAGAKLELKPK+DFDEER KE EKFESSRS ++SN KNN SSE  YPKGLIVAF LK +
Sbjct: 181 LYAGAKLELKPKRDFDEERSKETEKFESSRSNASSNWKNNNSSESNYPKGLIVAFALKKM 240

Query: 241 SSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSS-EKNE 300
           ++G+S EENGSH+V TD TECK DEGLDSSKNDSEKTEQT   NV KD EI KSS +K E
Sbjct: 241 TAGSSAEENGSHDVTTDKTECKTDEGLDSSKNDSEKTEQTGGENVGKDEEIQKSSDDKIE 300

Query: 301 EVDKNNDSGNEEKPELGEQS-----NEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFG 360
           E DK NDSGNEEKPE+ +QS     +E EEA EKPT  +S N+KNVVSREDLK IFQKFG
Sbjct: 301 EADKKNDSGNEEKPEVEDQSMDDPTDEREEAEEKPTFASSRNDKNVVSREDLKAIFQKFG 360

Query: 361 SVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYW 420
           S+KYIDFK+GEESGYIRFD+PEAAQKARAAAVLA+QGGL VKN IA LEPVSGEAEKEYW
Sbjct: 361 SIKYIDFKMGEESGYIRFDEPEAAQKARAAAVLADQGGLAVKNFIATLEPVSGEAEKEYW 420

Query: 421 RLLRSSQEKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 464
           R LRSSQEK +RDFK GNRGRGGKF+RGGKH RSRG+DN+RGRPNKAQ+V
Sbjct: 421 RALRSSQEKHHRDFK-GNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 469

[Close]

BLAST of MS001227 vs. NCBI nr
Match: XP_022951846.1 (la protein 1-like [Cucurbita moschata])

HSP 1 Score: 681.0 bits (1756), Expect = 7.1e-192
Identity = 373/470 (79.36%), Postives = 410/470 (87.23%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           M+ SSLDQETAKKVLRQVEFYFSDSNLPRDGFLK T+  SPDGMV+LSL+CSF+RM+ HL
Sbjct: 1   MENSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKKTIGASPDGMVDLSLVCSFSRMKGHL 60

Query: 61  KLG-DVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIA 120
            L  DV PD I EDTVKAVAETL+SS TIKVSEDGKKIGR  ELSKPEE++EQLD RTIA
Sbjct: 61  HLAQDVKPDAIPEDTVKAVAETLKSSSTIKVSEDGKKIGRIAELSKPEEMLEQLDDRTIA 120

Query: 121 ASPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESL 180
           ASPF+Y+VKLEDVEAFFGQ+AKVNSVRLPRHV+DKRVFCGTALVEFS+EEDAEK L ESL
Sbjct: 121 ASPFQYDVKLEDVEAFFGQIAKVNSVRLPRHVSDKRVFCGTALVEFSAEEDAEKVLTESL 180

Query: 181 LYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSV 240
           LYAGAKLELK K+DFDEER KE EKFESSRS ++SN KNN SSE  YPKGLIVAF LK +
Sbjct: 181 LYAGAKLELKSKRDFDEERSKETEKFESSRSNASSNWKNNNSSESNYPKGLIVAFALKKM 240

Query: 241 SSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSS-EKNE 300
           ++G+S EENGSH+V TD TECK DEGLDSSKNDSEKTEQT   NV KD EI KSS +K E
Sbjct: 241 TAGSSAEENGSHDVTTDKTECKTDEGLDSSKNDSEKTEQTGGENVGKDEEIQKSSDDKIE 300

Query: 301 EVDKNNDSGNEEKPELGEQS-----NEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFG 360
           E DK NDSGNEEKPE+ +QS     +E EEA EKPT  +S N+KNVVSREDLK IFQKFG
Sbjct: 301 EADKKNDSGNEEKPEVEDQSMDDPTDEREEAEEKPTFASSRNDKNVVSREDLKAIFQKFG 360

Query: 361 SVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYW 420
           S+KYIDFK+GEESGYIRFD+PEAAQKARAAAVLA+QGGL VKN IA LEPVSGEAEKEYW
Sbjct: 361 SIKYIDFKMGEESGYIRFDEPEAAQKARAAAVLADQGGLAVKNFIATLEPVSGEAEKEYW 420

Query: 421 RLLRSSQEKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 464
           R LRSSQEK +RDFK GNRGRGGKF+RGGKH RSRG+DN+RGRPNKAQ+V
Sbjct: 421 RALRSSQEKHHRDFK-GNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 469

[Close]

BLAST of MS001227 vs. NCBI nr
Match: XP_023002329.1 (la protein 1-like [Cucurbita maxima])

HSP 1 Score: 674.1 bits (1738), Expect = 8.7e-190
Identity = 369/470 (78.51%), Postives = 410/470 (87.23%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           M+ SSLDQET KKVLRQVEFYFSDSNLPRDGFLK T++ S DGMV+LSL+CSF+RM+ HL
Sbjct: 1   MENSSLDQETTKKVLRQVEFYFSDSNLPRDGFLKKTISASTDGMVDLSLVCSFSRMKGHL 60

Query: 61  KLG-DVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIA 120
            L  DV PD I EDT+KAVAETL+SS TIKVSEDGKKIGR  ELSKPEE+IEQLD RTIA
Sbjct: 61  HLAQDVKPDAIPEDTLKAVAETLKSSSTIKVSEDGKKIGRIAELSKPEEMIEQLDDRTIA 120

Query: 121 ASPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESL 180
           ASPF+Y+VKLEDVEAFFGQ+AKVNSVRLPRHV+DKRVFCGTALVEFS+EEDAEK L ESL
Sbjct: 121 ASPFQYDVKLEDVEAFFGQIAKVNSVRLPRHVSDKRVFCGTALVEFSAEEDAEKVLAESL 180

Query: 181 LYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSV 240
           LYAGAKLELKPK+DFDEER KE EKFESSRS ++SN KNN SSE  YPKGLIVAFTLK +
Sbjct: 181 LYAGAKLELKPKRDFDEERSKETEKFESSRSNASSNWKNNNSSESNYPKGLIVAFTLKKM 240

Query: 241 SSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSS-EKNE 300
           ++G+S EENGSH+V TD TECK DEGLDSSKNDSE T+QT   NV K+ EI KSS +K E
Sbjct: 241 TAGSSAEENGSHDVTTDKTECKTDEGLDSSKNDSEITDQTGGENVGKNEEIQKSSDDKIE 300

Query: 301 EVDKNNDSGNEEKPELGEQS-----NEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFG 360
           E DK NDSGNEEKPE+ +QS     +E EEA EKPT  +S N+KNVVSREDLK IFQKFG
Sbjct: 301 EADKKNDSGNEEKPEVEDQSMDDPTDEREEAEEKPTFASSRNDKNVVSREDLKAIFQKFG 360

Query: 361 SVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYW 420
           S+KYIDFK+GEESGYIRFD+PEAAQKARAAAVLA+QGGL VKN IA LEPVSGEAEKEYW
Sbjct: 361 SIKYIDFKMGEESGYIRFDEPEAAQKARAAAVLADQGGLAVKNFIATLEPVSGEAEKEYW 420

Query: 421 RLLRSSQEKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 464
           R LRSSQEK +RD+K GNRGRGGKF+RGGKH RSRG+DN+RGRPNKAQ+V
Sbjct: 421 RALRSSQEKHHRDYK-GNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 469

[Close]

BLAST of MS001227 vs. NCBI nr
Match: KAG7020316.1 (La protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 673.3 bits (1736), Expect = 1.5e-189
Identity = 371/470 (78.94%), Postives = 408/470 (86.81%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           M+ SSLDQETAKKVLRQVEFYFSDSNLPRDGFLK T+  SPDGMV+LSL+CSF+RM+ HL
Sbjct: 1   MENSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKKTIGASPDGMVDLSLVCSFSRMKGHL 60

Query: 61  KLG-DVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIA 120
            L  DV PD I EDTVKAVAETL+SS TIKVSEDGKKIGR  ELSKPEE+IEQLD RTIA
Sbjct: 61  HLAQDVKPDAIPEDTVKAVAETLKSSSTIKVSEDGKKIGRIAELSKPEEMIEQLDDRTIA 120

Query: 121 ASPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESL 180
           ASPF+Y+VKLEDVEAFFGQ+AKVNSVRLPRHV+DKRVFCGTALVEFS+EEDAEK L ESL
Sbjct: 121 ASPFQYDVKLEDVEAFFGQIAKVNSVRLPRHVSDKRVFCGTALVEFSAEEDAEKVLTESL 180

Query: 181 LYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSV 240
           LYAGAKLELK K+DFDEER KE EKFESSRS ++S+ KNN SSE  YPKGLIVAF LK +
Sbjct: 181 LYAGAKLELKSKRDFDEERSKETEKFESSRSNASSSWKNNNSSESNYPKGLIVAFALKKM 240

Query: 241 SSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSS-EKNE 300
           ++G+S EENGSH+V TD TECK DEGLDSSKNDSEKTEQT   NV KD EI KSS +K E
Sbjct: 241 TAGSSAEENGSHDVTTDKTECKTDEGLDSSKNDSEKTEQTRGENVGKDEEIQKSSDDKIE 300

Query: 301 EVDKNNDSGNEEKPELGEQS-----NEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFG 360
           E DK NDSG  EKPE+ +QS     +E EEA EKPT  +S N+KNVVSREDLK IFQKFG
Sbjct: 301 EADKKNDSGIGEKPEVEDQSMDDPTDEREEAEEKPTFASSRNDKNVVSREDLKAIFQKFG 360

Query: 361 SVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYW 420
           S+KYIDFK+GEESGYIRFD+PEAAQKARAAAVLA+QGGL VKN IA LEPVSGEAEKEYW
Sbjct: 361 SIKYIDFKMGEESGYIRFDEPEAAQKARAAAVLADQGGLAVKNFIATLEPVSGEAEKEYW 420

Query: 421 RLLRSSQEKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 464
           R LRSSQEK +RDFK GNRGRGGKF+RGGKH RSRG+DN+RGRPNKAQ+V
Sbjct: 421 RALRSSQEKHHRDFK-GNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 469

[Close]

BLAST of MS001227 vs. ExPASy Swiss-Prot
Match: Q93ZV7 (La protein 1 OS=Arabidopsis thaliana OX=3702 GN=LA1 PE=1 SV=1)

HSP 1 Score: 428.7 bits (1101), Expect = 8.3e-119
Identity = 253/470 (53.83%), Postives = 322/470 (68.51%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           M    L +ETAK VLRQVEFYFSDSNLP D FLK TV ES DG+V+L+LICSF++MR +L
Sbjct: 1   MSIPCLTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYL 60

Query: 61  KLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAA 120
           KLGD   DDI EDT+KAVA+TLR+S  +K+S+DGKK+GR+TEL K E+LIEQL+ RT+AA
Sbjct: 61  KLGDSKGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAA 120

Query: 121 SPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLL 180
           SPF Y+VK EDVE+FF Q  KVNSVR+PRHVA+ R+F G ALVEF +EEDA+  +K++L+
Sbjct: 121 SPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMKQNLV 180

Query: 181 YAGAKLELKPKKDFDEERGKEAEKFE-------SSRSTSNSNHKNNTSSEPYYPKGLIVA 240
           +AG +LELKPKK+FD ER K+  KF        S+   + S+HKNN++ EP YPKGLI++
Sbjct: 181 FAGQELELKPKKEFDNEREKDEVKFANYQPQKGSANQKNGSDHKNNSAYEPDYPKGLIIS 240

Query: 241 FTLKSVSSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKS 300
           FTLK                         +EG    K+  E T++T E + +K  +    
Sbjct: 241 FTLKR----------------------SAEEGTTEQKSSEEPTDKTMEESETKPAD---- 300

Query: 301 SEKNEEVDKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFG 360
                + DK N +G  +     ++ +E EE G   T     +NK+VV REDLK +F KFG
Sbjct: 301 ---TPDADKEN-TGEVQAEGAEDEDDEKEEKGALAT---HKDNKDVVLREDLKAVFGKFG 360

Query: 361 SVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYW 420
            VK++DFK+G E+GY+RFD+PEA+QKARAAAVLA +GGL VKN IA LEPV GEAEKEYW
Sbjct: 361 DVKFVDFKMGSETGYLRFDEPEASQKARAAAVLANEGGLAVKNFIAVLEPVIGEAEKEYW 420

Query: 421 RLLRSSQEKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 464
            LLRS      R  KGG  GRGG+  RGG+  R RG D+  GR NK+Q+V
Sbjct: 421 TLLRSKD----RFDKGGRGGRGGR--RGGRFGRKRGSDSPGGRWNKSQKV 431

[Close]

BLAST of MS001227 vs. ExPASy Swiss-Prot
Match: Q0V7U7 (La protein 2 OS=Arabidopsis thaliana OX=3702 GN=LA2 PE=1 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 7.4e-75
Identity = 192/462 (41.56%), Postives = 265/462 (57.36%), Query Frame = 0


Query: 4   SSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHLKLG 63
           SS ++ETAKK+L QVEFYFSDSNLP DGFL   V +S DG+V+L L+CSF+RMRN L LG
Sbjct: 3   SSFNEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLG 62

Query: 64  DVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAASPF 123
           ++  +DI    V+ VA  LR+S  +KVS +G++IGR T+LSKPEE++EQ+  RT+AASPF
Sbjct: 63  NINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAASPF 122

Query: 124 EYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLLYAG 183
           EY++K+EDV +FF Q AKVNSVRLP ++ADKR FCGTALVEFSSE+D +  L++SL+YAG
Sbjct: 123 EYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDILRQSLVYAG 182

Query: 184 AKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSVSSGT 243
           A L L PK DFD +R    ++   S S +             + +G IV F LK ++S  
Sbjct: 183 ADLVLIPKSDFDCQRENMIKQLGKSESHNE------------FRRGQIVKFALKWIAS-- 242

Query: 244 SDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSEKNEEVDKN 303
                                         EK     + +  K+    K  ++    D+ 
Sbjct: 243 -----------------------------EEKVTNKEKPSALKNKIKEKEDKETGIADRE 302

Query: 304 NDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFGSVKYIDFKIG 363
            ++G+     L + + +              NN N VS E LK +FQ+FGSV++I++  G
Sbjct: 303 KENGDNSCASLCKDNTDQ-------LVVPPWNNSNSVSSEVLKDLFQRFGSVEHIEYSGG 362

Query: 364 EESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIA-ALEPVSGEAEKEYWRLLRSSQEK 423
            +SGY+ F D E A KARAA      GGLVVKN  + ALE ++GE E+E W+ L S+   
Sbjct: 363 LDSGYVWFTDSETAMKARAAVEFV--GGLVVKNNFSVALEAINGEMERELWKRLSSA--- 396

Query: 424 RYRDFKGGNRGRGGKFHRGGKHARSRGHDN--DRGRPNKAQR 463
              + +GG  G          H + +G D   +  +P K  R
Sbjct: 423 ---ELEGGKEG----------HKKEKGKDECFENVQPTKKAR 396

[Close]

BLAST of MS001227 vs. ExPASy Swiss-Prot
Match: P33399 (La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=LHP1 PE=1 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-19
Identity = 93/273 (34.07%), Postives = 128/273 (46.89%), Query Frame = 0


Query: 9   ETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHLKLGDVGPD 68
           E   + L+QVEFYFS+ N P D FL+TT  E  DG V +S I +F RM+ +         
Sbjct: 28  EVLDRCLKQVEFYFSEFNFPYDRFLRTTA-EKNDGWVPISTIATFNRMKKY--------- 87

Query: 69  DISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTEL---SKPEELIEQLDVRTIAASPFEY 128
                 V  V E LRSS  ++VS DG+ + R   L   +     IEQ + RT+A   F +
Sbjct: 88  ----RPVDKVIEALRSSEILEVSADGENVKRRVPLDLTAARNARIEQ-NQRTLAVMNFPH 147

Query: 129 N--------VKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALK- 188
                       E++EAFF ++ ++N VRL R   +K+ F GT LVEF +  + E  LK 
Sbjct: 148 EDVEASQIPELQENLEAFFKKLGEINQVRLRRDHRNKK-FNGTVLVEFKTIPECEAFLKS 207

Query: 189 --------ESLLYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPK 248
                   E L Y G KL +  KK FD +R     K  S RS S + HK    + P +PK
Sbjct: 208 YSNDDESNEILSYEGKKLSVLTKKQFDLQREASKSKNFSGRSRSFNGHKK--KNLPKFPK 267

Query: 249 GLIVAFTLKSVSSGTSDEENGSHNVATDITECK 262
                       +G  + +  S  +A D  E K
Sbjct: 268 --------NKKKNGKEESKEDSSAIADDDEEHK 274

[Close]

BLAST of MS001227 vs. ExPASy Swiss-Prot
Match: Q7ZWE3 (La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.5e-08
Identity = 87/329 (26.44%), Postives = 150/329 (45.59%), Query Frame = 0


Query: 14  VLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHLKLGDVGPDDISED 73
           V +QVEF+F D NL +D F+K+ + +S DG ++++++ +F RM+N           ++ D
Sbjct: 46  VKKQVEFWFGDVNLHKDRFMKSIIEQSRDGYIDIAVLTTFNRMKN-----------LTAD 105

Query: 74  TVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAASPFEYNVKLEDVE 133
            VK +A  L++S  ++V+++G +I R   L    E  + +D RT+        V    +E
Sbjct: 106 -VKLIARALKNSTIVEVNDEGTRIRRKEPLG---ETPKDVDSRTVYVELLPKTVTHIWLE 165

Query: 134 AFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKA---LKESLLYAGAKLELKP 193
             F +   V  + +PR+    R   G A VEF ++E A+KA   L      A  K  + P
Sbjct: 166 RVFSKCGHVVYISIPRY-KSTRHSKGFAFVEFETQEQAQKAVEMLNNPPEDAPRKPGIFP 225

Query: 194 KK------DFD------EERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLI----VAF 253
           K        FD      +E GK+ +K E   STS     NN   +      +     +A 
Sbjct: 226 KTCRKKAVPFDAVTQDNDEDGKK-KKTELKNSTSEETGSNNMDQDGMLESTVTSEPNLAT 285

Query: 254 TLKSVSSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSS 313
              +VS     +   S +      E + +      K + EK+E    ++ +KD E++   
Sbjct: 286 LTSTVSKKAKKKRLRSQSFEASSGEDQFEMSSKMRKVEEEKSELKDLSSENKDEELNSLK 345

Query: 314 EKNEEVDKNNDSGNEEKPELGEQSNEHEE 324
           +K++ V K   +  + K +L E+    EE
Sbjct: 346 KKDDSVLK---AKRKRKKKLKERLKVGEE 354

[Close]

BLAST of MS001227 vs. ExPASy Swiss-Prot
Match: Q5XI01 (La-related protein 7 OS=Rattus norvegicus OX=10116 GN=Larp7 PE=1 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 5.6e-06
Identity = 82/323 (25.39%), Postives = 133/323 (41.18%), Query Frame = 0


Query: 14  VLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHLKLGDVGPDDISED 73
           + +QV+F+F D+NL +D FL+  + +S DG V++SL+ SF +M+   KL   G       
Sbjct: 33  IAKQVDFWFGDANLHKDRFLREQIEKSRDGYVDISLLVSFNKMK---KLTTDG------- 92

Query: 74  TVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAASPFEYNVKLEDVE 133
             K +A  L+SS  +++  +G +I R   L +  +  E+   RT+       NV    +E
Sbjct: 93  --KLIARALKSSSVVELDLEGTRIRRKKPLGERPKDEEE---RTVYVELLPKNVTHSWIE 152

Query: 134 AFFGQVAKVNSVRLPRH--VADKRVFCGTALVEFSSEEDAEKALKESLLYAGAKLELKPK 193
             FG+   V  + +P +    D +   G A VEF ++E A KA++    +     E  P+
Sbjct: 153 RVFGKCGNVVYISIPHYKSTGDPK---GFAFVEFETKEQAAKAIE----FLNNPPEEAPR 212

Query: 194 KDFDEERGKEAEKFESSRSTSNSNHKNN-----TSSEPYYPKGLIVAFTLKSVSSGTSDE 253
           K     +  + +   S R       K          E    K L+V  +   VS  T   
Sbjct: 213 KPGIFPKTVKNKPIPSLRVAEEKKKKKKKKGRIKKEESVQAKELVVDSSSSGVSKATKRP 272

Query: 254 ENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSEKNEEV------ 313
              S     +  E          K D  +T    E   SK G+  +SS ++E+       
Sbjct: 273 RTASEGSEAETPEAPKQPAKKKKKRDKVETGGLPE---SKAGKRERSSAEDEDCLPPRPK 330

Query: 314 DKNNDSGNEEKPELGEQSNEHEE 324
            K     +   P   E S EH +
Sbjct: 333 LKKRAQKDGGGPAASEVSKEHRD 330

[Close]

BLAST of MS001227 vs. ExPASy TrEMBL
Match: A0A6J1BRF4 (la protein 1 OS=Momordica charantia OX=3673 GN=LOC111004903 PE=4 SV=1)

HSP 1 Score: 871.7 bits (2251), Expect = 1.4e-249
Identity = 462/463 (99.78%), Postives = 462/463 (99.78%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL
Sbjct: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60

Query: 61  KLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAA 120
           KLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAA
Sbjct: 61  KLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAA 120

Query: 121 SPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLL 180
           SPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLL
Sbjct: 121 SPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLL 180

Query: 181 YAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSVS 240
           YAGAKLELKPKKDFDEER KEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSVS
Sbjct: 181 YAGAKLELKPKKDFDEERAKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSVS 240

Query: 241 SGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSEKNEEV 300
           SGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSEKNEEV
Sbjct: 241 SGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSEKNEEV 300

Query: 301 DKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFGSVKYIDF 360
           DKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFGSVKYIDF
Sbjct: 301 DKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFGSVKYIDF 360

Query: 361 KIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYWRLLRSSQ 420
           KIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYWRLLRSSQ
Sbjct: 361 KIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYWRLLRSSQ 420

Query: 421 EKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 464
           EKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV
Sbjct: 421 EKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 463

[Close]

BLAST of MS001227 vs. ExPASy TrEMBL
Match: A0A6J1GIM1 (la protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454576 PE=4 SV=1)

HSP 1 Score: 681.0 bits (1756), Expect = 3.4e-192
Identity = 373/470 (79.36%), Postives = 410/470 (87.23%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           M+ SSLDQETAKKVLRQVEFYFSDSNLPRDGFLK T+  SPDGMV+LSL+CSF+RM+ HL
Sbjct: 1   MENSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKKTIGASPDGMVDLSLVCSFSRMKGHL 60

Query: 61  KLG-DVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIA 120
            L  DV PD I EDTVKAVAETL+SS TIKVSEDGKKIGR  ELSKPEE++EQLD RTIA
Sbjct: 61  HLAQDVKPDAIPEDTVKAVAETLKSSSTIKVSEDGKKIGRIAELSKPEEMLEQLDDRTIA 120

Query: 121 ASPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESL 180
           ASPF+Y+VKLEDVEAFFGQ+AKVNSVRLPRHV+DKRVFCGTALVEFS+EEDAEK L ESL
Sbjct: 121 ASPFQYDVKLEDVEAFFGQIAKVNSVRLPRHVSDKRVFCGTALVEFSAEEDAEKVLTESL 180

Query: 181 LYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSV 240
           LYAGAKLELK K+DFDEER KE EKFESSRS ++SN KNN SSE  YPKGLIVAF LK +
Sbjct: 181 LYAGAKLELKSKRDFDEERSKETEKFESSRSNASSNWKNNNSSESNYPKGLIVAFALKKM 240

Query: 241 SSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSS-EKNE 300
           ++G+S EENGSH+V TD TECK DEGLDSSKNDSEKTEQT   NV KD EI KSS +K E
Sbjct: 241 TAGSSAEENGSHDVTTDKTECKTDEGLDSSKNDSEKTEQTGGENVGKDEEIQKSSDDKIE 300

Query: 301 EVDKNNDSGNEEKPELGEQS-----NEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFG 360
           E DK NDSGNEEKPE+ +QS     +E EEA EKPT  +S N+KNVVSREDLK IFQKFG
Sbjct: 301 EADKKNDSGNEEKPEVEDQSMDDPTDEREEAEEKPTFASSRNDKNVVSREDLKAIFQKFG 360

Query: 361 SVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYW 420
           S+KYIDFK+GEESGYIRFD+PEAAQKARAAAVLA+QGGL VKN IA LEPVSGEAEKEYW
Sbjct: 361 SIKYIDFKMGEESGYIRFDEPEAAQKARAAAVLADQGGLAVKNFIATLEPVSGEAEKEYW 420

Query: 421 RLLRSSQEKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 464
           R LRSSQEK +RDFK GNRGRGGKF+RGGKH RSRG+DN+RGRPNKAQ+V
Sbjct: 421 RALRSSQEKHHRDFK-GNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 469

[Close]

BLAST of MS001227 vs. ExPASy TrEMBL
Match: A0A6J1KQ54 (la protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111496200 PE=4 SV=1)

HSP 1 Score: 674.1 bits (1738), Expect = 4.2e-190
Identity = 369/470 (78.51%), Postives = 410/470 (87.23%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           M+ SSLDQET KKVLRQVEFYFSDSNLPRDGFLK T++ S DGMV+LSL+CSF+RM+ HL
Sbjct: 1   MENSSLDQETTKKVLRQVEFYFSDSNLPRDGFLKKTISASTDGMVDLSLVCSFSRMKGHL 60

Query: 61  KLG-DVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIA 120
            L  DV PD I EDT+KAVAETL+SS TIKVSEDGKKIGR  ELSKPEE+IEQLD RTIA
Sbjct: 61  HLAQDVKPDAIPEDTLKAVAETLKSSSTIKVSEDGKKIGRIAELSKPEEMIEQLDDRTIA 120

Query: 121 ASPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESL 180
           ASPF+Y+VKLEDVEAFFGQ+AKVNSVRLPRHV+DKRVFCGTALVEFS+EEDAEK L ESL
Sbjct: 121 ASPFQYDVKLEDVEAFFGQIAKVNSVRLPRHVSDKRVFCGTALVEFSAEEDAEKVLAESL 180

Query: 181 LYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSV 240
           LYAGAKLELKPK+DFDEER KE EKFESSRS ++SN KNN SSE  YPKGLIVAFTLK +
Sbjct: 181 LYAGAKLELKPKRDFDEERSKETEKFESSRSNASSNWKNNNSSESNYPKGLIVAFTLKKM 240

Query: 241 SSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSS-EKNE 300
           ++G+S EENGSH+V TD TECK DEGLDSSKNDSE T+QT   NV K+ EI KSS +K E
Sbjct: 241 TAGSSAEENGSHDVTTDKTECKTDEGLDSSKNDSEITDQTGGENVGKNEEIQKSSDDKIE 300

Query: 301 EVDKNNDSGNEEKPELGEQS-----NEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFG 360
           E DK NDSGNEEKPE+ +QS     +E EEA EKPT  +S N+KNVVSREDLK IFQKFG
Sbjct: 301 EADKKNDSGNEEKPEVEDQSMDDPTDEREEAEEKPTFASSRNDKNVVSREDLKAIFQKFG 360

Query: 361 SVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYW 420
           S+KYIDFK+GEESGYIRFD+PEAAQKARAAAVLA+QGGL VKN IA LEPVSGEAEKEYW
Sbjct: 361 SIKYIDFKMGEESGYIRFDEPEAAQKARAAAVLADQGGLAVKNFIATLEPVSGEAEKEYW 420

Query: 421 RLLRSSQEKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 464
           R LRSSQEK +RD+K GNRGRGGKF+RGGKH RSRG+DN+RGRPNKAQ+V
Sbjct: 421 RALRSSQEKHHRDYK-GNRGRGGKFNRGGKHGRSRGYDNNRGRPNKAQKV 469

[Close]

BLAST of MS001227 vs. ExPASy TrEMBL
Match: A0A6J1K750 (la protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111492255 PE=4 SV=1)

HSP 1 Score: 668.7 bits (1724), Expect = 1.8e-188
Identity = 371/471 (78.77%), Postives = 410/471 (87.05%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           M+ SSLDQETAKKVLRQVEFYFSDSNLPRDGFLK T++  PDGMV+LSLIC+F+RM+ HL
Sbjct: 1   MENSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKKTISGIPDGMVDLSLICTFSRMKGHL 60

Query: 61  KL-GDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIA 120
           KL  DV P++I EDT+KAVAETLRSS TIKVSEDGKKIGRTTEL KPEELIEQLD +TIA
Sbjct: 61  KLKQDVKPEEIPEDTLKAVAETLRSSSTIKVSEDGKKIGRTTELPKPEELIEQLDDKTIA 120

Query: 121 ASPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESL 180
           ASPFEY+VKLEDVEAFF Q+AKVNSVRLPRHVADKRVFCGTALVEFS+EEDAEK LKESL
Sbjct: 121 ASPFEYDVKLEDVEAFFNQIAKVNSVRLPRHVADKRVFCGTALVEFSNEEDAEKVLKESL 180

Query: 181 LYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSV 240
           LYAGAKLELKPK+DFD+ER KE E+FESSR+ S++N KNN   E  YPKGLIVAFTLKSV
Sbjct: 181 LYAGAKLELKPKRDFDKERAKETEEFESSRANSSANRKNNNPPESNYPKGLIVAFTLKSV 240

Query: 241 SSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQT-AEANVSKDGEISKSSEKNE 300
           SSG+S EENGSH VA D TECK DE LDSSKNDSEKT+Q   EAN+SKD EI  + + N 
Sbjct: 241 SSGSSAEENGSHCVAADKTECKTDERLDSSKNDSEKTKQIWEEANMSKDEEIKSADDNNG 300

Query: 301 EVDKNNDSGNEEKPELGEQS-----NEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFG 360
           E DK ND GNEEKPE+ E++     +EHEE  EKPTA    NN NVVSREDLKVIFQKFG
Sbjct: 301 EADKKNDLGNEEKPEVEERTTNDTVDEHEEDEEKPTAAKFKNNMNVVSREDLKVIFQKFG 360

Query: 361 SVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYW 420
           SVK+IDFKIG+ESGYIRF++PEAAQKARAAAVLAEQGGL VK+ IA LEPVSGEAEKEYW
Sbjct: 361 SVKFIDFKIGDESGYIRFEEPEAAQKARAAAVLAEQGGLAVKSFIATLEPVSGEAEKEYW 420

Query: 421 RLLRSSQEKRYRDFKGGNRGRGGKFHR-GGKHARSRGHDNDRGRPNKAQRV 464
           RLLRS+QEK +RDFK GNRGRGGKF+R GGKHARSRGH ND+GRPNKAQ+V
Sbjct: 421 RLLRSNQEKHHRDFK-GNRGRGGKFNRGGGKHARSRGHGNDQGRPNKAQKV 470

[Close]

BLAST of MS001227 vs. ExPASy TrEMBL
Match: A0A6J1HHB2 (la protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111462923 PE=4 SV=1)

HSP 1 Score: 660.2 bits (1702), Expect = 6.3e-186
Identity = 371/475 (78.11%), Postives = 408/475 (85.89%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           M+ SSLDQETAKKVLRQVEFYFSDSNLPRDGFLK T++   DGMV+LSLIC+F+RM+ HL
Sbjct: 1   MENSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKKTISGIADGMVDLSLICTFSRMKGHL 60

Query: 61  KL-GDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIA 120
           KL  DV P++I EDT+KAVAETLRSS TIKVSEDGKKIGRTTEL KPEELIEQLD +TIA
Sbjct: 61  KLKQDVKPEEIPEDTLKAVAETLRSSSTIKVSEDGKKIGRTTELPKPEELIEQLDDKTIA 120

Query: 121 ASPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESL 180
           ASPFEY+VKLEDVEAFF Q+AKVNSVRLPRHVADKRVFCGTALVEFS+EEDAEK LKESL
Sbjct: 121 ASPFEYDVKLEDVEAFFNQIAKVNSVRLPRHVADKRVFCGTALVEFSTEEDAEKVLKESL 180

Query: 181 LYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSV 240
           LYAGAKLELKPK+DFD ER KE E+FESSR+ S++N KNN   E  YPKGLIVAFTLKSV
Sbjct: 181 LYAGAKLELKPKRDFDAERAKETEEFESSRANSSANRKNNNPPESNYPKGLIVAFTLKSV 240

Query: 241 SSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTA-EANVSKDGEISKSSEKNE 300
           SSG+S EENGSH VA D TECK DE LDSSKNDSEKTE    EAN+SKD EI  + + N 
Sbjct: 241 SSGSSAEENGSHGVAADKTECKPDERLDSSKNDSEKTEIIGEEANMSKDEEIKSADDNNG 300

Query: 301 EVDKNNDSGNEEKPELGEQS-----NEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFG 360
           E DK ND GNEE+PE+ E++     +EHEE  EKPTA  S NN NVVSREDLKVIFQKFG
Sbjct: 301 EADKKNDLGNEERPEVEERTTNDTVDEHEEDEEKPTAAKSKNNMNVVSREDLKVIFQKFG 360

Query: 361 SVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYW 420
           SVK+IDFKIG+ESGYIRF++PEAAQKARAAAVLAEQGGLVVK+ IA LEPVSGEAEKEYW
Sbjct: 361 SVKFIDFKIGDESGYIRFEEPEAAQKARAAAVLAEQGGLVVKSFIATLEPVSGEAEKEYW 420

Query: 421 RLLRSSQEKRYRDFKGGNRGRGGKFHR-GGKHARSRGH----DNDRGRPNKAQRV 464
           RLLRS+QEK +RDFK  NRGRGGKF+R GGKHARSRGH     NDRGRPNKAQ+V
Sbjct: 421 RLLRSNQEKHHRDFK-SNRGRGGKFNRGGGKHARSRGHGHCNGNDRGRPNKAQKV 474

[Close]

BLAST of MS001227 vs. TAIR 10
Match: AT4G32720.1 (La protein 1 )

HSP 1 Score: 428.7 bits (1101), Expect = 5.9e-120
Identity = 253/470 (53.83%), Postives = 322/470 (68.51%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           M    L +ETAK VLRQVEFYFSDSNLP D FLK TV ES DG+V+L+LICSF++MR +L
Sbjct: 1   MSIPCLTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYL 60

Query: 61  KLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAA 120
           KLGD   DDI EDT+KAVA+TLR+S  +K+S+DGKK+GR+TEL K E+LIEQL+ RT+AA
Sbjct: 61  KLGDSKGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAA 120

Query: 121 SPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLL 180
           SPF Y+VK EDVE+FF Q  KVNSVR+PRHVA+ R+F G ALVEF +EEDA+  +K++L+
Sbjct: 121 SPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMKQNLV 180

Query: 181 YAGAKLELKPKKDFDEERGKEAEKFE-------SSRSTSNSNHKNNTSSEPYYPKGLIVA 240
           +AG +LELKPKK+FD ER K+  KF        S+   + S+HKNN++ EP YPKGLI++
Sbjct: 181 FAGQELELKPKKEFDNEREKDEVKFANYQPQKGSANQKNGSDHKNNSAYEPDYPKGLIIS 240

Query: 241 FTLKSVSSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKS 300
           FTLK                         +EG    K+  E T++T E + +K  +    
Sbjct: 241 FTLKR----------------------SAEEGTTEQKSSEEPTDKTMEESETKPAD---- 300

Query: 301 SEKNEEVDKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFG 360
                + DK N +G  +     ++ +E EE G   T     +NK+VV REDLK +F KFG
Sbjct: 301 ---TPDADKEN-TGEVQAEGAEDEDDEKEEKGALAT---HKDNKDVVLREDLKAVFGKFG 360

Query: 361 SVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYW 420
            VK++DFK+G E+GY+RFD+PEA+QKARAAAVLA +GGL VKN IA LEPV GEAEKEYW
Sbjct: 361 DVKFVDFKMGSETGYLRFDEPEASQKARAAAVLANEGGLAVKNFIAVLEPVIGEAEKEYW 420

Query: 421 RLLRSSQEKRYRDFKGGNRGRGGKFHRGGKHARSRGHDNDRGRPNKAQRV 464
            LLRS      R  KGG  GRGG+  RGG+  R RG D+  GR NK+Q+V
Sbjct: 421 TLLRSKD----RFDKGGRGGRGGR--RGGRFGRKRGSDSPGGRWNKSQKV 431

[Close]

BLAST of MS001227 vs. TAIR 10
Match: AT4G32720.2 (La protein 1 )

HSP 1 Score: 409.8 bits (1052), Expect = 2.8e-114
Identity = 238/441 (53.97%), Postives = 302/441 (68.48%), Query Frame = 0


Query: 1   MDTSSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHL 60
           M    L +ETAK VLRQVEFYFSDSNLP D FLK TV ES DG+V+L+LICSF++MR +L
Sbjct: 1   MSIPCLTEETAKTVLRQVEFYFSDSNLPIDDFLKKTVTESEDGLVSLALICSFSKMRGYL 60

Query: 61  KLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAA 120
           KLGD   DDI EDT+KAVA+TLR+S  +K+S+DGKK+GR+TEL K E+LIEQL+ RT+AA
Sbjct: 61  KLGDSKGDDIPEDTIKAVADTLRTSSALKISDDGKKVGRSTELLKLEDLIEQLNARTVAA 120

Query: 121 SPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLL 180
           SPF Y+VK EDVE+FF Q  KVNSVR+PRHVA+ R+F G ALVEF +EEDA+  +K++L+
Sbjct: 121 SPFSYDVKREDVESFFSQYGKVNSVRMPRHVAESRIFSGVALVEFPTEEDAQNVMKQNLV 180

Query: 181 YAGAKLELKPKKDFDEERGKEAEKFE-------SSRSTSNSNHKNNTSSEPYYPKGLIVA 240
           +AG +LELKPKK+FD ER K+  KF        S+   + S+HKNN++ EP YPKGLI++
Sbjct: 181 FAGQELELKPKKEFDNEREKDEVKFANYQPQKGSANQKNGSDHKNNSAYEPDYPKGLIIS 240

Query: 241 FTLKSVSSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKS 300
           FTLK                         +EG    K+  E T++T E + +K  +    
Sbjct: 241 FTLKR----------------------SAEEGTTEQKSSEEPTDKTMEESETKPAD---- 300

Query: 301 SEKNEEVDKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFG 360
                + DK N +G  +     ++ +E EE G   T     +NK+VV REDLK +F KFG
Sbjct: 301 ---TPDADKEN-TGEVQAEGAEDEDDEKEEKGALAT---HKDNKDVVLREDLKAVFGKFG 360

Query: 361 SVKYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIAALEPVSGEAEKEYW 420
            VK++DFK+G E+GY+RFD+PEA+QKARAAAVLA +GGL VKN IA LEPV GEAEKEYW
Sbjct: 361 DVKFVDFKMGSETGYLRFDEPEASQKARAAAVLANEGGLAVKNFIAVLEPVIGEAEKEYW 404

Query: 421 RLLRSSQEKRYRDFKGGNRGR 435
            LLRS      R  KGG  GR
Sbjct: 421 TLLRSKD----RFDKGGRGGR 404

[Close]

BLAST of MS001227 vs. TAIR 10
Match: AT1G79880.1 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 282.7 bits (722), Expect = 5.2e-76
Identity = 192/462 (41.56%), Postives = 265/462 (57.36%), Query Frame = 0


Query: 4   SSLDQETAKKVLRQVEFYFSDSNLPRDGFLKTTVNESPDGMVNLSLICSFTRMRNHLKLG 63
           SS ++ETAKK+L QVEFYFSDSNLP DGFL   V +S DG+V+L L+CSF+RMRN L LG
Sbjct: 3   SSFNEETAKKLLTQVEFYFSDSNLPTDGFLNREVTKSKDGLVSLPLVCSFSRMRNLLGLG 62

Query: 64  DVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDVRTIAASPF 123
           ++  +DI    V+ VA  LR+S  +KVS +G++IGR T+LSKPEE++EQ+  RT+AASPF
Sbjct: 63  NINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHRRTLAASPF 122

Query: 124 EYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKALKESLLYAG 183
           EY++K+EDV +FF Q AKVNSVRLP ++ADKR FCGTALVEFSSE+D +  L++SL+YAG
Sbjct: 123 EYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDILRQSLVYAG 182

Query: 184 AKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFTLKSVSSGT 243
           A L L PK DFD +R    ++   S S +             + +G IV F LK ++S  
Sbjct: 183 ADLVLIPKSDFDCQRENMIKQLGKSESHNE------------FRRGQIVKFALKWIAS-- 242

Query: 244 SDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSEKNEEVDKN 303
                                         EK     + +  K+    K  ++    D+ 
Sbjct: 243 -----------------------------EEKVTNKEKPSALKNKIKEKEDKETGIADRE 302

Query: 304 NDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFGSVKYIDFKIG 363
            ++G+     L + + +              NN N VS E LK +FQ+FGSV++I++  G
Sbjct: 303 KENGDNSCASLCKDNTDQ-------LVVPPWNNSNSVSSEVLKDLFQRFGSVEHIEYSGG 362

Query: 364 EESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIA-ALEPVSGEAEKEYWRLLRSSQEK 423
            +SGY+ F D E A KARAA      GGLVVKN  + ALE ++GE E+E W+ L S+   
Sbjct: 363 LDSGYVWFTDSETAMKARAAVEFV--GGLVVKNNFSVALEAINGEMERELWKRLSSA--- 396

Query: 424 RYRDFKGGNRGRGGKFHRGGKHARSRGHDN--DRGRPNKAQR 463
              + +GG  G          H + +G D   +  +P K  R
Sbjct: 423 ---ELEGGKEG----------HKKEKGKDECFENVQPTKKAR 396

[Close]

BLAST of MS001227 vs. TAIR 10
Match: AT1G79880.3 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 214.9 bits (546), Expect = 1.3e-55
Identity = 150/374 (40.11%), Postives = 211/374 (56.42%), Query Frame = 0


Query: 56  MRNHLKLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDV 115
           MRN L LG++  +DI    V+ VA  LR+S  +KVS +G++IGR T+LSKPEE++EQ+  
Sbjct: 1   MRNLLGLGNINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHR 60

Query: 116 RTIAASPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKAL 175
           RT+AASPFEY++K+EDV +FF Q AKVNSVRLP ++ADKR FCGTALVEFSSE+D +  L
Sbjct: 61  RTLAASPFEYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDIL 120

Query: 176 KESLLYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFT 235
           ++SL+YAGA L L PK DFD +R    ++   S S +             + +G IV F 
Sbjct: 121 RQSLVYAGADLVLIPKSDFDCQRENMIKQLGKSESHNE------------FRRGQIVKFA 180

Query: 236 LKSVSSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSE 295
           LK ++S                                EK     + +  K+    K  +
Sbjct: 181 LKWIAS-------------------------------EEKVTNKEKPSALKNKIKEKEDK 240

Query: 296 KNEEVDKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFGSV 355
           +    D+  ++G+     L + + +              NN N VS E LK +FQ+FGSV
Sbjct: 241 ETGIADREKENGDNSCASLCKDNTDQ-------LVVPPWNNSNSVSSEVLKDLFQRFGSV 300

Query: 356 KYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIA-ALEPVSGEAEKEYWR 415
           ++I++  G +SGY+ F D E A KARAA      GGLVVKN  + ALE ++GE E+E W+
Sbjct: 301 EHIEYSGGLDSGYVWFTDSETAMKARAAVEFV--GGLVVKNNFSVALEAINGEMERELWK 322

Query: 416 LLRSSQEKRYRDFK 429
            L S++ +   D K
Sbjct: 361 RLSSAELEGGYDIK 322

[Close]

BLAST of MS001227 vs. TAIR 10
Match: AT1G79880.2 (RNA recognition motif (RRM)-containing protein )

HSP 1 Score: 210.7 bits (535), Expect = 2.5e-54
Identity = 157/410 (38.29%), Postives = 222/410 (54.15%), Query Frame = 0


Query: 56  MRNHLKLGDVGPDDISEDTVKAVAETLRSSPTIKVSEDGKKIGRTTELSKPEELIEQLDV 115
           MRN L LG++  +DI    V+ VA  LR+S  +KVS +G++IGR T+LSKPEE++EQ+  
Sbjct: 1   MRNLLGLGNINREDIPPRIVEEVANLLRTSDFLKVSNNGQRIGRGTKLSKPEEVLEQVHR 60

Query: 116 RTIAASPFEYNVKLEDVEAFFGQVAKVNSVRLPRHVADKRVFCGTALVEFSSEEDAEKAL 175
           RT+AASPFEY++K+EDV +FF Q AKVNSVRLP ++ADKR FCGTALVEFSSE+D +  L
Sbjct: 61  RTLAASPFEYSIKMEDVSSFFSQYAKVNSVRLPPNIADKRRFCGTALVEFSSEQDTQDIL 120

Query: 176 KESLLYAGAKLELKPKKDFDEERGKEAEKFESSRSTSNSNHKNNTSSEPYYPKGLIVAFT 235
           ++SL+YAGA L L PK DFD +R    ++   S S +             + +G IV F 
Sbjct: 121 RQSLVYAGADLVLIPKSDFDCQRENMIKQLGKSESHNE------------FRRGQIVKFA 180

Query: 236 LKSVSSGTSDEENGSHNVATDITECKVDEGLDSSKNDSEKTEQTAEANVSKDGEISKSSE 295
           LK ++S                                EK     + +  K+    K  +
Sbjct: 181 LKWIAS-------------------------------EEKVTNKEKPSALKNKIKEKEDK 240

Query: 296 KNEEVDKNNDSGNEEKPELGEQSNEHEEAGEKPTAGASINNKNVVSREDLKVIFQKFGSV 355
           +    D+  ++G+     L + + +              NN N VS E LK +FQ+FGSV
Sbjct: 241 ETGIADREKENGDNSCASLCKDNTDQ-------LVVPPWNNSNSVSSEVLKDLFQRFGSV 300

Query: 356 KYIDFKIGEESGYIRFDDPEAAQKARAAAVLAEQGGLVVKNCIA-ALEPVSGEAEKEYWR 415
           ++I++  G +SGY+ F D E A KARAA      GGLVVKN  + ALE ++GE E+E W+
Sbjct: 301 EHIEYSGGLDSGYVWFTDSETAMKARAAVEFV--GGLVVKNNFSVALEAINGEMERELWK 342

Query: 416 LLRSSQEKRYRDFKGGNRGRGGKFHRGGKHARSRGHDN--DRGRPNKAQR 463
            L S+      + +GG  G          H + +G D   +  +P K  R
Sbjct: 361 RLSSA------ELEGGKEG----------HKKEKGKDECFENVQPTKKAR 342

The following BLAST results are available for this feature:

BLAST of MS001227 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022131859.1	2.8e-249	99.78	la protein 1 [Momordica charantia]	[more]
XP_023537626.1	4.9e-193	79.79	la protein 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_022951846.1	7.1e-192	79.36	la protein 1-like [Cucurbita moschata]	[more]
XP_023002329.1	8.7e-190	78.51	la protein 1-like [Cucurbita maxima]	[more]
KAG7020316.1	1.5e-189	78.94	La protein 1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MS001227 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZV7	8.3e-119	53.83	La protein 1 OS=Arabidopsis thaliana OX=3702 GN=LA1 PE=1 SV=1	[more]
Q0V7U7	7.4e-75	41.56	La protein 2 OS=Arabidopsis thaliana OX=3702 GN=LA2 PE=1 SV=1	[more]
P33399	1.2e-19	34.07	La protein homolog OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=5...	[more]
Q7ZWE3	4.5e-08	26.44	La-related protein 7 OS=Danio rerio OX=7955 GN=larp7 PE=2 SV=1	[more]
Q5XI01	5.6e-06	25.39	La-related protein 7 OS=Rattus norvegicus OX=10116 GN=Larp7 PE=1 SV=2	[more]

BLAST of MS001227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRF4	1.4e-249	99.78	la protein 1 OS=Momordica charantia OX=3673 GN=LOC111004903 PE=4 SV=1	[more]
A0A6J1GIM1	3.4e-192	79.36	la protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111454576 PE=4 SV=1	[more]
A0A6J1KQ54	4.2e-190	78.51	la protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111496200 PE=4 SV=1	[more]
A0A6J1K750	1.8e-188	78.77	la protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111492255 PE=4 SV=1	[more]
A0A6J1HHB2	6.3e-186	78.11	la protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111462923 PE=4 SV=1	[more]

BLAST of MS001227 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32720.1	5.9e-120	53.83	La protein 1	[more]
AT4G32720.2	2.8e-114	53.97	La protein 1	[more]
AT1G79880.1	5.2e-76	41.56	RNA recognition motif (RRM)-containing protein	[more]
AT1G79880.3	1.3e-55	40.11	RNA recognition motif (RRM)-containing protein	[more]
AT1G79880.2	2.5e-54	38.29	RNA recognition motif (RRM)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002344	Lupus La protein	PRINTS	PR00302	LUPUSLA	coord: 17..34 score: 69.7 coord: 157..175 score: 35.41 coord: 43..58 score: 32.95
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 8..100 e-value: 1.5E-35 score: 134.1
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 14..83 e-value: 9.1E-22 score: 76.9
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 4..107 score: 23.622459
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 117..189 e-value: 3.8E-5 score: 33.1 coord: 331..402 e-value: 0.15 score: 13.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 124..177 e-value: 4.4E-8 score: 32.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 116..193 score: 10.479576
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 110..206 e-value: 5.7E-14 score: 54.0
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 315..429 e-value: 1.8E-23 score: 84.5
IPR014886	La protein, xRRM domain	PFAM	PF08777	RRM_3	coord: 338..425 e-value: 3.5E-21 score: 75.1
IPR014886	La protein, xRRM domain	PROSITE	PS51939	XRRM	coord: 321..445 score: 21.463011
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 2..104 e-value: 7.2E-26 score: 92.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..335
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 208..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 257..327
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 424..463
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..225
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 446..463
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..255
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 2..463
None	No IPR available	PANTHER	PTHR22792:SF138	BNAANNG34180D PROTEIN	coord: 2..463
None	No IPR available	CDD	cd12291	RRM1_La	coord: 117..189 e-value: 7.98273E-13 score: 61.4474
None	No IPR available	CDD	cd08030	LA_like_plant	coord: 10..99 e-value: 4.72692E-43 score: 144.839
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 8..102
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 116..382

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001227.1	MS001227.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005634	nucleus
cellular_component	GO:1990904	ribonucleoprotein complex
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding