MS001188 (gene) Bitter gourd (TR) v1

Overview


Name	MS001188
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	early nodulin-93-like
Location	scaffold36: 2170556 .. 2172555 (+)
RNA-Seq Expression	MS001188
Synteny	MS001188

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATTCCATCGGAATTGAGGGCTTTGTGGGTGAACAGAAGGAATGCTCTGATAATTCCGTCGCCAGCTGAAGAACGGAAAGTGCTGAACGCGAAGCTTTGCACTCAAGGTCTCTTACTACGCTCGATCCCTTACTTGTTTTATTCGATCCTTTAAGCTTCCTATGGTTGATTAGAACATGGAATTCGTATTTGAACAATGAAATCTCGACACTGGCGCAAAGGATTTCATCTACTTTGGCTGCTGGCGTAAATCGTCACTGGCTAATCTGTTGGAAGAATTAGGAAGATTCTTCAACCTGAGAATCTGTCTCTATGCGTCGTTTCAATACGATGGAAACTGTTCCGGGGAGGGGGTGACTAGAAAAATACACTACTTTTGGAATTCCTAACCTATTTAGAGGGCAATTATTCCTAGGATCCCTTCGTCTCAGTTTCATTCTTCTTTGGAGCTGGAGATGCAAGTGCGATCAGTGTTTTTCAGATTTGATCTTTTTACATGTTTAAGTGGAGTATTTATCGCATCAGGTTTTGTATCTTACATCAGTTAGCCTTTGTATAATTTGCAGAAGGTGTTCGTTCTGGCTTCAAGGCGGCTTCTATTGCATGTGTTGCCAGTGCAGTGCCTACGGTATTCAATCTGACATAAAAGCCATGGTTCCAATCTGATTTGATGCCCGTGCTTGCTGTATTGTAGCTTAAAGTAGCGTAACTTTGATCATCTATAAGTAGGTTGACCATTCTTAAGAGGCATACAGACTAACAATTAGTAAGCAAGATTTTTGCTTATGTTGCCCGCGCTTGCTGTATTGTAGCTGAAAGTAGCATAAATTCGATCCTCTATAAGTAGGTTGACCATTCTTAAGAGGCATAAAGACTAACAATTAGCATGCAAGATTTTTGCTCATGTTGACTGTGCTTGATGTCTGAAAGTAGCATAACTTTGATCATCAATAAGTAGGTTGAACATTCTTAAGAGGAGGCATAAGGACTAACAATTAGTGTGCAAGATTTTGCTTATGTTATTCATCAGGTCATGGGTAATACTTAGTAGCATAAATCATAAAGCTTTCCTCCAATTTAATTTGCATTGGATTGAGCGATGTCTTTGTAGCTTTTGGTATTCTTTATTGACCCATTCCATGTTACTACTAGAGTGCACTTGTCAATTTTCATGGATACATATATTAAGAAAAACACTATTATTTTGGTGAAAATTGATGCAACTTAATGGCATAAAATTTTGGTGTTGGTGGGTTGATGAAAGGTTAGTTGTTTGACGAGATCTTCTCTGAACATCAGATTTAATGTTTGTTGGGAAATGTTTTGGATCTTTTATAGAACACTTTTCCCCCATTTCTTAGTTGAACAAGGAACCATGAATCATGTGAATTAAAATCACACTATTATTCCCTCCTGCCACGTGATATATCTTTGCAGTTAGTCTAGACAATTGTTGTAATGGTTGAAATATTGCCTGAGTTTAAATAGAAGAAATTTTAGAAAACCACCTTTTTATGATTGGCGAAGTATTAAGTTTCCAAGAGAAGTGGGGCAAGTGGAGAGTTAAGTTTATCCTCATTGCATTTGTGAGATATGTGTGCGTGTGTGTAAATTTTAGTTTTTAAGTTCAATTTGCTTCTTCTCCTATTTTGTCAGTTGGTTGCTGTTCGAATGGTTCCCTGGGCCAAAGCAAACCTTAATTATACTGCTCAGGCACTCATCATTTCTGCAGGTATAATGTTTATATAAAAACTTGTATTAATCAATTGTCATCATTTGTTTCAAACACAGCATATGTTATTTACAGCTTAGAGGGTTGTGAATAGCCTAAGGAGTTAAAAAAATGTCACAAGGAATTACTTATTATAGGAATTAACGTTTTACTTTTAATGGTGAACAGCATCTATTGCTGCATACTTCATCACTGCGGATAAAACCATCTTAGAATGTGCAAGAAGAAATTCTCAGTTAGAGGATGCCTTGAGACGCCAAGGA

mRNA sequence

ATGGGAATTCCATCGGAATTGAGGGCTTTGTGGGTGAACAGAAGGAATGCTCTGATAATTCCGTCGCCAGCTGAAGAACGGAAAGTGCTGAACGCGAAGCTTTGCACTCAAGAAGGTGTTCGTTCTGGCTTCAAGGCGGCTTCTATTGCATGTGTTGCCAGTGCAGTGCCTACGTTCAATTTGCTTCTTCTCCTATTTTGTCAGTTGGTTGCTGTTCGAATGGTTCCCTGGGCCAAAGCAAACCTTAATTATACTGCTCAGGCACTCATCATTTCTGCAGCATCTATTGCTGCATACTTCATCACTGCGGATAAAACCATCTTAGAATGTGCAAGAAGAAATTCTCAGTTAGAGGATGCCTTGAGACGCCAAGGA

Coding sequence (CDS)

ATGGGAATTCCATCGGAATTGAGGGCTTTGTGGGTGAACAGAAGGAATGCTCTGATAATTCCGTCGCCAGCTGAAGAACGGAAAGTGCTGAACGCGAAGCTTTGCACTCAAGAAGGTGTTCGTTCTGGCTTCAAGGCGGCTTCTATTGCATGTGTTGCCAGTGCAGTGCCTACGTTCAATTTGCTTCTTCTCCTATTTTGTCAGTTGGTTGCTGTTCGAATGGTTCCCTGGGCCAAAGCAAACCTTAATTATACTGCTCAGGCACTCATCATTTCTGCAGCATCTATTGCTGCATACTTCATCACTGCGGATAAAACCATCTTAGAATGTGCAAGAAGAAATTCTCAGTTAGAGGATGCCTTGAGACGCCAAGGA

Protein sequence

MGIPSELRALWVNRRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFNLLLLLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDALRRQG

Homology

[Close]

BLAST of MS001188 vs. NCBI nr
Match: XP_022132175.1 (early nodulin-93-like [Momordica charantia])

HSP 1 Score: 205.7 bits (522), Expect = 2.4e-49
Identity = 112/125 (89.60%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MGIPSELRALWVNRRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFN 60
           MGIPSELR LWVN RNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPT  
Sbjct: 1   MGIPSELRDLWVNTRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPT-- 60

Query: 61  LLLLLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 120
                   LVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQL+DA
Sbjct: 61  --------LVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLQDA 115

Query: 121 LRRQG 126
           LRRQG
Sbjct: 121 LRRQG 115

[Close]

BLAST of MS001188 vs. NCBI nr
Match: XP_038886799.1 (early nodulin-93-like [Benincasa hispida])

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-47
Identity = 106/125 (84.80%), Postives = 112/125 (89.60%), Query Frame = 0


Query: 1   MGIPSELRALWVNRRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFN 60
           MGIPSELR LWV+RRNA++IPSPAEERK+ NAKLCTQEGVR+GFK ASIACVASAVPT  
Sbjct: 1   MGIPSELRDLWVHRRNAIVIPSPAEERKISNAKLCTQEGVRAGFKNASIACVASAVPT-- 60

Query: 61  LLLLLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 120
                   LVAVR+VPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA
Sbjct: 61  --------LVAVRVVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 115

Query: 121 LRRQG 126
           LRRQG
Sbjct: 121 LRRQG 115

[Close]

BLAST of MS001188 vs. NCBI nr
Match: XP_022996859.1 (early nodulin-93-like [Cucurbita maxima] >KAG6598764.1 hypothetical protein SDJN03_08542, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 194.9 bits (494), Expect = 4.2e-46
Identity = 105/125 (84.00%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MGIPSELRALWVNRRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFN 60
           MGIPS+LR LWV RRNAL+IPSPAEERK+ NAKLCTQEGVR+GFK ASIACVASAVPT  
Sbjct: 1   MGIPSDLRDLWVERRNALVIPSPAEERKISNAKLCTQEGVRAGFKNASIACVASAVPT-- 60

Query: 61  LLLLLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 120
                   LVAVR+VPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLE A
Sbjct: 61  --------LVAVRVVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEHA 115

Query: 121 LRRQG 126
           LRRQG
Sbjct: 121 LRRQG 115

[Close]

BLAST of MS001188 vs. NCBI nr
Match: XP_023546668.1 (early nodulin-93-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 192.6 bits (488), Expect = 2.1e-45
Identity = 104/125 (83.20%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MGIPSELRALWVNRRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFN 60
           MGIPS+LR LWV RRNAL+IPSPAEERK+ NAK CTQEGVR+GFK ASIACVASAVPT  
Sbjct: 1   MGIPSDLRDLWVERRNALVIPSPAEERKISNAKRCTQEGVRAGFKNASIACVASAVPT-- 60

Query: 61  LLLLLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 120
                   LVAVR+VPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLE A
Sbjct: 61  --------LVAVRVVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEHA 115

Query: 121 LRRQG 126
           LRRQG
Sbjct: 121 LRRQG 115

[Close]

BLAST of MS001188 vs. NCBI nr
Match: XP_022961692.1 (early nodulin-93-like [Cucurbita moschata])

HSP 1 Score: 192.2 bits (487), Expect = 2.7e-45
Identity = 104/125 (83.20%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MGIPSELRALWVNRRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFN 60
           MGIPS+LR LWV RRNA +IPSPAEERK+ NAKLCTQEGVR+GFK ASIACVASAVPT  
Sbjct: 1   MGIPSDLRDLWVERRNAPVIPSPAEERKISNAKLCTQEGVRAGFKNASIACVASAVPT-- 60

Query: 61  LLLLLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 120
                   LVAVR+VPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLE A
Sbjct: 61  --------LVAVRVVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEHA 115

Query: 121 LRRQG 126
           LRRQG
Sbjct: 121 LRRQG 115

[Close]

BLAST of MS001188 vs. ExPASy Swiss-Prot
Match: Q02921 (Early nodulin-93 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.2e-18
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 0


Query: 26  ERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFNLLLLLFCQLVAVRMVPWAKANLNYT 85
           ++K+  AK C+ EGV +G KAA +A VASA+PT          L +VRM+PWA+ANLN+T
Sbjct: 17  DQKLAFAKRCSHEGVLAGAKAAVVASVASAIPT----------LASVRMLPWARANLNHT 76

Query: 86  AQALIISAASIAAYFITADKTILECARRNS 116
           AQALIIS A+ AAYFI ADKT+L  AR+NS
Sbjct: 77  AQALIISTATAAAYFIVADKTVLATARKNS 96

[Close]

BLAST of MS001188 vs. ExPASy TrEMBL
Match: A0A6J1BRP8 (early nodulin-93-like OS=Momordica charantia OX=3673 GN=LOC111005097 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.1e-49
Identity = 112/125 (89.60%), Postives = 113/125 (90.40%), Query Frame = 0


Query: 1   MGIPSELRALWVNRRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFN 60
           MGIPSELR LWVN RNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPT  
Sbjct: 1   MGIPSELRDLWVNTRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPT-- 60

Query: 61  LLLLLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 120
                   LVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQL+DA
Sbjct: 61  --------LVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLQDA 115

Query: 121 LRRQG 126
           LRRQG
Sbjct: 121 LRRQG 115

[Close]

BLAST of MS001188 vs. ExPASy TrEMBL
Match: A0A6J1K9V4 (early nodulin-93-like OS=Cucurbita maxima OX=3661 GN=LOC111491977 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.0e-46
Identity = 105/125 (84.00%), Postives = 110/125 (88.00%), Query Frame = 0


Query: 1   MGIPSELRALWVNRRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFN 60
           MGIPS+LR LWV RRNAL+IPSPAEERK+ NAKLCTQEGVR+GFK ASIACVASAVPT  
Sbjct: 1   MGIPSDLRDLWVERRNALVIPSPAEERKISNAKLCTQEGVRAGFKNASIACVASAVPT-- 60

Query: 61  LLLLLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 120
                   LVAVR+VPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLE A
Sbjct: 61  --------LVAVRVVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEHA 115

Query: 121 LRRQG 126
           LRRQG
Sbjct: 121 LRRQG 115

[Close]

BLAST of MS001188 vs. ExPASy TrEMBL
Match: A0A6J1HAU7 (early nodulin-93-like OS=Cucurbita moschata OX=3662 GN=LOC111462385 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.3e-45
Identity = 104/125 (83.20%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MGIPSELRALWVNRRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFN 60
           MGIPS+LR LWV RRNA +IPSPAEERK+ NAKLCTQEGVR+GFK ASIACVASAVPT  
Sbjct: 1   MGIPSDLRDLWVERRNAPVIPSPAEERKISNAKLCTQEGVRAGFKNASIACVASAVPT-- 60

Query: 61  LLLLLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 120
                   LVAVR+VPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLE A
Sbjct: 61  --------LVAVRVVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEHA 115

Query: 121 LRRQG 126
           LRRQG
Sbjct: 121 LRRQG 115

[Close]

BLAST of MS001188 vs. ExPASy TrEMBL
Match: A0A0A0LPQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372870 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 2.9e-45
Identity = 102/125 (81.60%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MGIPSELRALWVNRRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFN 60
           MGIPSELR  WV+RRN+ +IPSPAE+RK+ NAK CTQEGVR+GFK ASIACVASAVPT  
Sbjct: 1   MGIPSELRDSWVHRRNSFVIPSPAEDRKIANAKRCTQEGVRAGFKNASIACVASAVPT-- 60

Query: 61  LLLLLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 120
                   LVAVR+VPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA
Sbjct: 61  --------LVAVRVVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 115

Query: 121 LRRQG 126
           LRRQG
Sbjct: 121 LRRQG 115

[Close]

BLAST of MS001188 vs. ExPASy TrEMBL
Match: A0A1S4DVR9 (early nodulin-93-like OS=Cucumis melo OX=3656 GN=LOC103488164 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 101/125 (80.80%), Postives = 109/125 (87.20%), Query Frame = 0


Query: 1   MGIPSELRALWVNRRNALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFN 60
           MGIPSELR LWV+RR++ +IPSPAEERK+ NAK CTQEGVR+GFK ASIACVASAVPT  
Sbjct: 1   MGIPSELRDLWVHRRDSFVIPSPAEERKIANAKRCTQEGVRAGFKNASIACVASAVPT-- 60

Query: 61  LLLLLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLEDA 120
                   LVAVR+VPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLE+A
Sbjct: 61  --------LVAVRVVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLENA 115

Query: 121 LRRQG 126
           LR QG
Sbjct: 121 LRHQG 115

[Close]

BLAST of MS001188 vs. TAIR 10
Match: AT5G25940.1 (early nodulin-related )

HSP 1 Score: 104.8 bits (260), Expect = 5.3e-23
Identity = 64/115 (55.65%), Postives = 79/115 (68.70%), Query Frame = 0


Query: 6   ELRALWVNRR--NALIIPSPAEERKVLNAKLCTQEGVRSGFKAASIACVASAVPTFNLLL 65
           E R+   NRR  N  +I SP E  K+  A+   Q G  +G KAA++A VASA+PT     
Sbjct: 2   ENRSEMGNRRQQNLFVIASPDEIAKIHRAETSKQAGAIAGAKAAAVAAVASAIPT----- 61

Query: 66  LLFCQLVAVRMVPWAKANLNYTAQALIISAASIAAYFITADKTILECARRNSQLE 119
                + AVRM PWAKANLNYTAQALIIS+ASIAA+FITADKTIL+ ARRN++ +
Sbjct: 62  -----VAAVRMFPWAKANLNYTAQALIISSASIAAFFITADKTILQGARRNTEAQ 106

The following BLAST results are available for this feature:

BLAST of MS001188 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132175.1	2.4e-49	89.60	early nodulin-93-like [Momordica charantia]	[more]
XP_038886799.1	3.8e-47	84.80	early nodulin-93-like [Benincasa hispida]	[more]
XP_022996859.1	4.2e-46	84.00	early nodulin-93-like [Cucurbita maxima] >KAG6598764.1 hypothetical protein SDJN...	[more]
XP_023546668.1	2.1e-45	83.20	early nodulin-93-like [Cucurbita pepo subsp. pepo]	[more]
XP_022961692.1	2.7e-45	83.20	early nodulin-93-like [Cucurbita moschata]	[more]

BLAST of MS001188 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q02921	2.2e-18	57.78	Early nodulin-93 OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of MS001188 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRP8	1.1e-49	89.60	early nodulin-93-like OS=Momordica charantia OX=3673 GN=LOC111005097 PE=4 SV=1	[more]
A0A6J1K9V4	2.0e-46	84.00	early nodulin-93-like OS=Cucurbita maxima OX=3661 GN=LOC111491977 PE=4 SV=1	[more]
A0A6J1HAU7	1.3e-45	83.20	early nodulin-93-like OS=Cucurbita moschata OX=3662 GN=LOC111462385 PE=4 SV=1	[more]
A0A0A0LPQ5	2.9e-45	81.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G372870 PE=4 SV=1	[more]
A0A1S4DVR9	1.4e-44	80.80	early nodulin-93-like OS=Cucumis melo OX=3656 GN=LOC103488164 PE=4 SV=1	[more]

BLAST of MS001188 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25940.1	5.3e-23	55.65	early nodulin-related	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005050	Early nodulin 93 ENOD93 protein	PFAM	PF03386	ENOD93	coord: 28..115 e-value: 1.6E-35 score: 120.8
IPR005050	Early nodulin 93 ENOD93 protein	PANTHER	PTHR33605	EARLY NODULIN-93	coord: 1..117
None	No IPR available	PANTHER	PTHR33605:SF3	EARLY NODULIN-LIKE PROTEIN	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001188.1	MS001188.1	mRNA