MS001136 (gene) Bitter gourd (TR) v1

Overview
NameMS001136
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
Locationscaffold36: 1721339 .. 1721462 (-)
RNA-Seq ExpressionMS001136
SyntenyMS001136
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTATAAATAATATGAATAAAAACATTCATAATCATAGTGATAGTGACAAGTACTGTTGATGATTTAGTCGGCATTCGGAATTTCGTATCTGATGACACTTTTTTAGTCAGGGATAGTAATAGC

mRNA sequence

ATTATAAATAATATGAATAAAAACATTCATAATCATAGTGATAGTACAAGTACTGTTGATGATTTAGTCGGCATTCGGAATTTCGTATCTGATGACACTTTTTTAGTCAGGGATAGTAATAGC

Coding sequence (CDS)

ATTATAAATAATATGAATAAAAACATTCATAATCATAGTGATAGTACAAGTACTGTTGATGATTTAGTCGGCATTCGGAATTTCGTATCTGATGACACTTTTTTAGTCAGGGATAGTAATAGC

Protein sequence

IINNMNKNIHNHSDSTSTVDDLVGIRNFVSDDTFLVRDSNS
Homology
BLAST of MS001136 vs. NCBI nr
Match: XP_023000627.1 (uncharacterized protein LOC111494870 [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 1  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS 42
          IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Sbjct: 37 IINNMNKNIPSHSDNSSYSTVDDLVGIRNFVSDDTFLVRDSNS 79

BLAST of MS001136 vs. NCBI nr
Match: YP_009447544.1 (acetyl-CoA carboxylase beta subunit [Cucurbita moschata] >ATY70000.1 acetyl-CoA carboxylase beta subunit [Cucurbita moschata])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 1  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS 42
          IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Sbjct: 37 IINNMNKNIPSHSDNSSYSTVDDLVGIRNFVSDDTFLVRDSNS 79

BLAST of MS001136 vs. NCBI nr
Match: YP_009447459.1 (acetyl-CoA carboxylase beta subunit [Cucurbita maxima] >ATY69918.1 acetyl-CoA carboxylase beta subunit [Cucurbita maxima])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 1  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS 42
          IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Sbjct: 37 IINNMNKNIPSHSDNSSYSTVDDLVGIRNFVSDDTFLVRDSNS 79

BLAST of MS001136 vs. NCBI nr
Match: XP_023521964.1 (uncharacterized protein LOC111785813 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 1  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS 42
          IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Sbjct: 37 IINNMNKNIPSHSDNSSYSTVDDLVGIRNFVSDDTFLVRDSNS 79

BLAST of MS001136 vs. NCBI nr
Match: YP_009752929.1 (acetyl-CoA carboxylase subunit beta [Momordica sessilifolia] >QIT06001.1 acetyl-CoA carboxylase subunit beta [Momordica sessilifolia])

HSP 1 Score: 68.6 bits (166), Expect = 1.5e-08
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 1  IINNMNKNIHNHSDST----STVDDLVGIRNFVSDDTFLVRDSNS 42
          IINN+NKNI NHSDS     STVDDLVGIRNFVSDDTFLVRDSNS
Sbjct: 42 IINNINKNIPNHSDSDNSSYSTVDDLVGIRNFVSDDTFLVRDSNS 86

BLAST of MS001136 vs. ExPASy Swiss-Prot
Match: Q2QD80 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cucumis sativus OX=3659 GN=accD PE=3 SV=2)

HSP 1 Score: 67.8 bits (164), Expect = 3.3e-11
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 1  IINNMNKNIHNHSD----STSTVDDLVGIRNFVSDDTFLVRDSNS 42
          IINNMNKNI +HSD    S STVDDLVGIRNFVSDDTFLVRDSNS
Sbjct: 37 IINNMNKNIPSHSDSYNSSYSTVDDLVGIRNFVSDDTFLVRDSNS 81

BLAST of MS001136 vs. ExPASy Swiss-Prot
Match: Q09X08 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Morus indica OX=248361 GN=accD PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 1.3e-04
Identity = 30/47 (63.83%), Postives = 35/47 (74.47%), Query Frame = 0

Query: 1  IINNMNKNIHNHSDST----STVDDLVG---IRNFVSDDTFLVRDSN 41
          IIN+M+K+I + SDS     S VD LVG   IRNF+SDDTFLVRDSN
Sbjct: 42 IINDMDKDIPSGSDSDNSSYSNVDHLVGVRYIRNFLSDDTFLVRDSN 88

BLAST of MS001136 vs. ExPASy Swiss-Prot
Match: A6MM45 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Buxus microphylla OX=153571 GN=accD PE=3 SV=2)

HSP 1 Score: 45.1 bits (105), Expect = 2.3e-04
Identity = 27/47 (57.45%), Postives = 32/47 (68.09%), Query Frame = 0

Query: 1  IINNMNKNIHNHSDSTSTVDDLV-------GIRNFVSDDTFLVRDSN 41
          IINNM+KNIH+  DS S+    V       GI+ F+SDDTFLVRDSN
Sbjct: 41 IINNMDKNIHSWGDSGSSSCSNVYPLFGVRGIQGFISDDTFLVRDSN 87

BLAST of MS001136 vs. ExPASy Swiss-Prot
Match: Q0ZJ11 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Vitis vinifera OX=29760 GN=accD PE=3 SV=2)

HSP 1 Score: 44.7 bits (104), Expect = 3.0e-04
Identity = 28/47 (59.57%), Postives = 32/47 (68.09%), Query Frame = 0

Query: 1  IINNMNKNIHN----HSDSTSTVDDLVG---IRNFVSDDTFLVRDSN 41
          +INN +KNI+N     S S S VD L G   IRNF+SDDTFLVRD N
Sbjct: 41 VINNTDKNINNWSQIKSSSYSNVDHLFGIRDIRNFISDDTFLVRDRN 87

BLAST of MS001136 vs. ExPASy Swiss-Prot
Match: A0ZZ44 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Gossypium barbadense OX=3634 GN=accD PE=3 SV=2)

HSP 1 Score: 43.9 bits (102), Expect = 5.1e-04
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0

Query: 3  NNMNKNIHNHSDST---STVDDLV---GIRNFVSDDTFLVRDSN 41
          N+ +KNIH+ SDS+   S VD LV    IRNF+SDDTFL+RDSN
Sbjct: 44 NDTDKNIHDCSDSSSYYSKVDHLVDVKDIRNFISDDTFLIRDSN 87

BLAST of MS001136 vs. ExPASy TrEMBL
Match: A0A6J1KE58 (uncharacterized protein LOC111494870 OS=Cucurbita maxima OX=3661 GN=LOC111494870 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.1e-09
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 1  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS 42
          IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Sbjct: 37 IINNMNKNIPSHSDNSSYSTVDDLVGIRNFVSDDTFLVRDSNS 79

BLAST of MS001136 vs. ExPASy TrEMBL
Match: A0A2H4T210 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cucurbita maxima OX=3661 GN=accD PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.1e-09
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 1  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS 42
          IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Sbjct: 37 IINNMNKNIPSHSDNSSYSTVDDLVGIRNFVSDDTFLVRDSNS 79

BLAST of MS001136 vs. ExPASy TrEMBL
Match: A0A2H4T291 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cucurbita moschata OX=3662 GN=accD PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.1e-09
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 1  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS 42
          IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Sbjct: 37 IINNMNKNIPSHSDNSSYSTVDDLVGIRNFVSDDTFLVRDSNS 79

BLAST of MS001136 vs. ExPASy TrEMBL
Match: A0A6H0EUK2 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Momordica sessilifolia OX=703387 GN=accD PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.1e-09
Identity = 38/45 (84.44%), Postives = 39/45 (86.67%), Query Frame = 0

Query: 1  IINNMNKNIHNHSDST----STVDDLVGIRNFVSDDTFLVRDSNS 42
          IINN+NKNI NHSDS     STVDDLVGIRNFVSDDTFLVRDSNS
Sbjct: 42 IINNINKNIPNHSDSDNSSYSTVDDLVGIRNFVSDDTFLVRDSNS 86

BLAST of MS001136 vs. ExPASy TrEMBL
Match: A0A344AXQ6 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cucurbita pepo OX=3663 GN=accD PE=3 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.1e-09
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 0

Query: 1  IINNMNKNIHNHSD--STSTVDDLVGIRNFVSDDTFLVRDSNS 42
          IINNMNKNI +HSD  S STVDDLVGIRNFVSDDTFLVRDSNS
Sbjct: 37 IINNMNKNIPSHSDNSSYSTVDDLVGIRNFVSDDTFLVRDSNS 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023000627.11.5e-0888.37uncharacterized protein LOC111494870 [Cucurbita maxima][more]
YP_009447544.11.5e-0888.37acetyl-CoA carboxylase beta subunit [Cucurbita moschata] >ATY70000.1 acetyl-CoA ... [more]
YP_009447459.11.5e-0888.37acetyl-CoA carboxylase beta subunit [Cucurbita maxima] >ATY69918.1 acetyl-CoA ca... [more]
XP_023521964.11.5e-0888.37uncharacterized protein LOC111785813 [Cucurbita pepo subsp. pepo][more]
YP_009752929.11.5e-0884.44acetyl-CoA carboxylase subunit beta [Momordica sessilifolia] >QIT06001.1 acetyl-... [more]
Match NameE-valueIdentityDescription
Q2QD803.3e-1184.44Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
Q09X081.3e-0463.83Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A6MM452.3e-0457.45Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
Q0ZJ113.0e-0459.57Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A0ZZ445.1e-0461.36Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
Match NameE-valueIdentityDescription
A0A6J1KE587.1e-0988.37uncharacterized protein LOC111494870 OS=Cucurbita maxima OX=3661 GN=LOC111494870... [more]
A0A2H4T2107.1e-0988.37Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A0A2H4T2917.1e-0988.37Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A0A6H0EUK27.1e-0984.44Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A0A344AXQ67.1e-0988.37Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001136.1MS001136.1mRNA