MS001069 (gene) Bitter gourd (TR) v1

Overview
NameMS001069
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Description60s ribosomal protein l2
Locationscaffold36: 1241635 .. 1241745 (+)
RNA-Seq ExpressionMS001069
SyntenyMS001069
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGACAATTGAGAGGTTGTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATACGCCCGTTTGGCTCCTCGCGGAGTATAGCTCACATCCAAAC

mRNA sequence

GTGACAATTGAGAGGTTGTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATACGCCCGTTTGGCTCCTCGCGGAGTATAGCTCACATCCAAAC

Coding sequence (CDS)

GTGACAATTGAGAGGTTGTCACTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATACGCCCGTTTGGCTCCTCGCGGAGTATAGCTCACATCCAAAC

Protein sequence

VTIERLSLSIPSHTGREVKWQGHTPVWLLAEYSSHPN
Homology
BLAST of MS001069 vs. NCBI nr
Match: KAA0032895.1 (60s ribosomal protein l2 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 5.2e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 1  VTIERLSLSIPSHTGREVKWQGHTPVWLLAEYSSHPN 38
          VTIER SLSIPSHTGREVKWQGHTPVWLLAEYSSHPN
Sbjct: 49 VTIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPN 85

BLAST of MS001069 vs. NCBI nr
Match: KAA0031822.1 (60s ribosomal protein l2 [Cucumis melo var. makuwa] >TYJ97312.1 60s ribosomal protein l2 [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 7.1e-10
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1  VTIERLSLSIPSHTGREVKWQGHTPVWLLAEYSSHPN 38
          +TIER SLSIPSHTGREVKWQGH  VWL  EYSSHPN
Sbjct: 1  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPN 37

BLAST of MS001069 vs. NCBI nr
Match: KAA0051145.1 (ribosomal protein L2 [Cucumis melo var. makuwa] >TYK03754.1 ribosomal protein L2 [Cucumis melo var. makuwa])

HSP 1 Score: 71.2 bits (173), Expect = 2.1e-09
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 1  VTIERLSLSIPSHTGREVKWQGHTPVWLLAEYSSHPN 38
          +TIER SLSIPSHTGR+VKWQGH PVWL+AEYS H N
Sbjct: 32 MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLN 68

BLAST of MS001069 vs. ExPASy TrEMBL
Match: A0A5A7SUL2 (60s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00880 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 2.5e-13
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 0

Query: 1  VTIERLSLSIPSHTGREVKWQGHTPVWLLAEYSSHPN 38
          VTIER SLSIPSHTGREVKWQGHTPVWLLAEYSSHPN
Sbjct: 49 VTIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPN 85

BLAST of MS001069 vs. ExPASy TrEMBL
Match: A0A5D3BBV8 (60s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001170 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.4e-10
Identity = 31/37 (83.78%), Postives = 32/37 (86.49%), Query Frame = 0

Query: 1  VTIERLSLSIPSHTGREVKWQGHTPVWLLAEYSSHPN 38
          +TIER SLSIPSHTGREVKWQGH  VWL  EYSSHPN
Sbjct: 1  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPN 37

BLAST of MS001069 vs. ExPASy TrEMBL
Match: A0A5D3BXG0 (Ribosomal protein L2 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001340 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 9.9e-10
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 0

Query: 1  VTIERLSLSIPSHTGREVKWQGHTPVWLLAEYSSHPN 38
          +TIER SLSIPSHTGR+VKWQGH PVWL+AEYS H N
Sbjct: 32 MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLN 68

BLAST of MS001069 vs. ExPASy TrEMBL
Match: A0A6N2KQX0 (Ribosomal_L2 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS82338 PE=3 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.7e-06
Identity = 25/26 (96.15%), Postives = 26/26 (100.00%), Query Frame = 0

Query: 1   VTIERLSLSIPSHTGREVKWQGHTPV 27
           VTIERLSLSIPSHTGREVKWQGHTP+
Sbjct: 358 VTIERLSLSIPSHTGREVKWQGHTPL 383

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0032895.15.2e-1397.3060s ribosomal protein l2 [Cucumis melo var. makuwa][more]
KAA0031822.17.1e-1083.7860s ribosomal protein l2 [Cucumis melo var. makuwa] >TYJ97312.1 60s ribosomal pr... [more]
KAA0051145.12.1e-0981.08ribosomal protein L2 [Cucumis melo var. makuwa] >TYK03754.1 ribosomal protein L2... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SUL22.5e-1397.3060s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3BBV83.4e-1083.7860s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5D3BXG09.9e-1081.08Ribosomal protein L2 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A6N2KQX08.7e-0696.15Ribosomal_L2 domain-containing protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001069.1MS001069.1mRNA