MS001067 (gene) Bitter gourd (TR) v1

Overview


Name	MS001067
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	conserved peptide upstream open reading frame 19
Location	scaffold36: 1231308 .. 1231382 (-)
RNA-Seq Expression	MS001067
Synteny	MS001067

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGAACGGGCCTCTCTCTTTTTGTCGTCAATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAG

mRNA sequence

ATGTCTGAACGGGCCTCTCTCTTTTTGTCGTCAATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAG

Coding sequence (CDS)

ATGTCTGAACGGGCCTCTCTCTTTTTGTCGTCAATTGGATTGCTTGGAGAGTATTGTCCTACGTCTAGGAAAAAG

Protein sequence

MSERASLFLSSIGLLGEYCPTSRKK

Homology

[Close]

BLAST of MS001067 vs. NCBI nr
Match: PPD71333.1 (hypothetical protein GOBAR_DD31780 [Gossypium barbadense])

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  MSERASLFLSSIGLLGEYCPTSRKK 26
          MSERASLFLSSIGLLGEYCPTSRKK
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKK 25

[Close]

BLAST of MS001067 vs. NCBI nr
Match: TYH72424.1 (hypothetical protein ES332_D05G254800v1 [Gossypium tomentosum])

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  MSERASLFLSSIGLLGEYCPTSRKK 26
          MSERASLFLSSIGLLGEYCPTSRKK
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKK 25

[Close]

BLAST of MS001067 vs. NCBI nr
Match: KAG8493920.1 (hypothetical protein CXB51_011240 [Gossypium anomalum])

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  MSERASLFLSSIGLLGEYCPTSRKK 26
          MSERASLFLSSIGLLGEYCPTSRKK
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKK 25

[Close]

BLAST of MS001067 vs. NCBI nr
Match: MBA0808378.1 (hypothetical protein [Gossypium harknessii])

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  MSERASLFLSSIGLLGEYCPTSRKK 26
          MSERASLFLSSIGLLGEYCPTSRKK
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKK 25

[Close]

BLAST of MS001067 vs. NCBI nr
Match: MBA0691900.1 (hypothetical protein [Gossypium aridum])

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  MSERASLFLSSIGLLGEYCPTSRKK 26
          MSERASLFLSSIGLLGEYCPTSRKK
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKK 25

[Close]

BLAST of MS001067 vs. ExPASy TrEMBL
Match: A0A5D2L037 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G254800v1 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  MSERASLFLSSIGLLGEYCPTSRKK 26
          MSERASLFLSSIGLLGEYCPTSRKK
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKK 25

[Close]

BLAST of MS001067 vs. ExPASy TrEMBL
Match: A0A5A7VB37 (ATP synthase subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001260 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  MSERASLFLSSIGLLGEYCPTSRKK 26
          MSERASLFLSSIGLLGEYCPTSRKK
Sbjct: 22 MSERASLFLSSIGLLGEYCPTSRKK 46

[Close]

BLAST of MS001067 vs. ExPASy TrEMBL
Match: A0A7J8XXW1 (W2 domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_009501 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  MSERASLFLSSIGLLGEYCPTSRKK 26
          MSERASLFLSSIGLLGEYCPTSRKK
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKK 25

[Close]

BLAST of MS001067 vs. ExPASy TrEMBL
Match: A0A7J9HFE2 (W2 domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_024121 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  MSERASLFLSSIGLLGEYCPTSRKK 26
          MSERASLFLSSIGLLGEYCPTSRKK
Sbjct: 1  MSERASLFLSSIGLLGEYCPTSRKK 25

[Close]

BLAST of MS001067 vs. TAIR 10
Match: AT1G36732.1 (conserved peptide upstream open reading frame 19 )

HSP 1 Score: 44.3 bits (103), Expect = 1.7e-05
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 0


Query: 1  MSERASLFLSSIGLLGEYCPTSRKK 26
          MSE+ASLF SSI LLGEYCP SRKK
Sbjct: 1  MSEQASLFQSSIRLLGEYCPISRKK 25

The following BLAST results are available for this feature:

BLAST of MS001067 vs. NCBI nr


Match Name	E-value	Identity	Description
PPD71333.1	3.0e-04	100.00	hypothetical protein GOBAR_DD31780 [Gossypium barbadense]	[more]
TYH72424.1	3.0e-04	100.00	hypothetical protein ES332_D05G254800v1 [Gossypium tomentosum]	[more]
KAG8493920.1	3.0e-04	100.00	hypothetical protein CXB51_011240 [Gossypium anomalum]	[more]
MBA0808378.1	3.0e-04	100.00	hypothetical protein [Gossypium harknessii]	[more]
MBA0691900.1	3.0e-04	100.00	hypothetical protein [Gossypium aridum]	[more]

BLAST of MS001067 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS001067 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2L037	1.4e-04	100.00	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D05G254800v1 P...	[more]
A0A5A7VB37	1.4e-04	100.00	ATP synthase subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A7J8XXW1	1.4e-04	100.00	W2 domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_009501 PE=3 S...	[more]
A0A7J9HFE2	1.4e-04	100.00	W2 domain-containing protein OS=Gossypium harknessii OX=34285 GN=Gohar_024121 PE...	[more]

BLAST of MS001067 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G36732.1	1.7e-05	84.00	conserved peptide upstream open reading frame 19	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001067.1	MS001067.1	mRNA