MS001044 (gene) Bitter gourd (TR) v1

Overview
NameMS001044
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionmyosin-binding protein 2 isoform X2
Locationscaffold36: 1047205 .. 1047348 (+)
RNA-Seq ExpressionMS001044
SyntenyMS001044
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTTCTGGAAGTTATGGAAGATCTGAGCTCTTGTGATAATAAAGCATTTGAAGTCGGTGAGGAGAAAAATAATGAATTAGCTTCAACAACCCTCAGTCATCTTGAGTTCTACATTGATTGGGGCGACGATTATCAATTGATT

mRNA sequence

GATTTTCTGGAAGTTATGGAAGATCTGAGCTCTTGTGATAATAAAGCATTTGAAGTCGGTGAGGAGAAAAATAATGAATTAGCTTCAACAACCCTCAGTCATCTTGAGTTCTACATTGATTGGGGCGACGATTATCAATTGATT

Coding sequence (CDS)

GATTTTCTGGAAGTTATGGAAGATCTGAGCTCTTGTGATAATAAAGCATTTGAAGTCGGTGAGGAGAAAAATAATGAATTAGCTTCAACAACCCTCAGTCATCTTGAGTTCTACATTGATTGGGGCGACGATTATCAATTGATT

Protein sequence

DFLEVMEDLSSCDNKAFEVGEEKNNELASTTLSHLEFYIDWGDDYQLI
Homology
BLAST of MS001044 vs. NCBI nr
Match: XP_022146391.1 (myosin-binding protein 2 isoform X2 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 9.5e-07
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 1   DFLEVMEDLSSCDNKAFEVGEEKNNELASTTLSHLEFYIDWGDDYQLI 49
           DFLE+ EDL SCD KA +VG EK  E A T   HLEFYID GDD +LI
Sbjct: 238 DFLELTEDLGSCDQKAVQVGYEKEEESAETAPHHLEFYIDRGDDRRLI 285

BLAST of MS001044 vs. NCBI nr
Match: XP_022146389.1 (myosin-binding protein 2 isoform X1 [Momordica charantia] >XP_022146390.1 myosin-binding protein 2 isoform X1 [Momordica charantia])

HSP 1 Score: 62.8 bits (151), Expect = 9.5e-07
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 1   DFLEVMEDLSSCDNKAFEVGEEKNNELASTTLSHLEFYIDWGDDYQLI 49
           DFLE+ EDL SCD KA +VG EK  E A T   HLEFYID GDD +LI
Sbjct: 238 DFLELTEDLGSCDQKAVQVGYEKEEESAETAPHHLEFYIDRGDDRRLI 285

BLAST of MS001044 vs. NCBI nr
Match: TYK30495.1 (myosin-binding protein 2 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 1   DFLEVMEDLSSCDNKAFEVGEEKNNELASTTLSHLEFYIDWGDDYQLI 49
           DFLE+ EDL+ C+ K  EVG EK +EL  T  +HLEFYID GDD +LI
Sbjct: 239 DFLELAEDLTICNQKTVEVGCEKEDELPETVPNHLEFYIDRGDDRRLI 286

BLAST of MS001044 vs. NCBI nr
Match: XP_008467120.1 (PREDICTED: myosin-binding protein 2 isoform X2 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 1   DFLEVMEDLSSCDNKAFEVGEEKNNELASTTLSHLEFYIDWGDDYQLI 49
           DFLE+ EDL+ C+ K  EVG EK +EL  T  +HLEFYID GDD +LI
Sbjct: 239 DFLELAEDLTICNQKTVEVGCEKEDELPETVPNHLEFYIDRGDDRRLI 286

BLAST of MS001044 vs. NCBI nr
Match: XP_016898800.1 (PREDICTED: myosin-binding protein 2 isoform X1 [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 1   DFLEVMEDLSSCDNKAFEVGEEKNNELASTTLSHLEFYIDWGDDYQLI 49
           DFLE+ EDL+ C+ K  EVG EK +EL  T  +HLEFYID GDD +LI
Sbjct: 239 DFLELAEDLTICNQKTVEVGCEKEDELPETVPNHLEFYIDRGDDRRLI 286

BLAST of MS001044 vs. ExPASy TrEMBL
Match: A0A6J1CX55 (myosin-binding protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111015615 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.6e-07
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 1   DFLEVMEDLSSCDNKAFEVGEEKNNELASTTLSHLEFYIDWGDDYQLI 49
           DFLE+ EDL SCD KA +VG EK  E A T   HLEFYID GDD +LI
Sbjct: 238 DFLELTEDLGSCDQKAVQVGYEKEEESAETAPHHLEFYIDRGDDRRLI 285

BLAST of MS001044 vs. ExPASy TrEMBL
Match: A0A6J1CZ80 (myosin-binding protein 2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111015615 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.6e-07
Identity = 31/48 (64.58%), Postives = 34/48 (70.83%), Query Frame = 0

Query: 1   DFLEVMEDLSSCDNKAFEVGEEKNNELASTTLSHLEFYIDWGDDYQLI 49
           DFLE+ EDL SCD KA +VG EK  E A T   HLEFYID GDD +LI
Sbjct: 238 DFLELTEDLGSCDQKAVQVGYEKEEESAETAPHHLEFYIDRGDDRRLI 285

BLAST of MS001044 vs. ExPASy TrEMBL
Match: A0A5A7TSE2 (Myosin-binding protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G00410 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-06
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 1   DFLEVMEDLSSCDNKAFEVGEEKNNELASTTLSHLEFYIDWGDDYQLI 49
           DFLE+ EDL+ C+ K  EVG EK +EL  T  +HLEFYID GDD +LI
Sbjct: 239 DFLELAEDLTICNQKTVEVGCEKEDELPETVPNHLEFYIDRGDDRRLI 286

BLAST of MS001044 vs. ExPASy TrEMBL
Match: A0A5D3E5B4 (Myosin-binding protein 2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00380 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-06
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 1   DFLEVMEDLSSCDNKAFEVGEEKNNELASTTLSHLEFYIDWGDDYQLI 49
           DFLE+ EDL+ C+ K  EVG EK +EL  T  +HLEFYID GDD +LI
Sbjct: 239 DFLELAEDLTICNQKTVEVGCEKEDELPETVPNHLEFYIDRGDDRRLI 286

BLAST of MS001044 vs. ExPASy TrEMBL
Match: A0A1S4DSW3 (myosin-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504551 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-06
Identity = 29/48 (60.42%), Postives = 35/48 (72.92%), Query Frame = 0

Query: 1   DFLEVMEDLSSCDNKAFEVGEEKNNELASTTLSHLEFYIDWGDDYQLI 49
           DFLE+ EDL+ C+ K  EVG EK +EL  T  +HLEFYID GDD +LI
Sbjct: 239 DFLELAEDLTICNQKTVEVGCEKEDELPETVPNHLEFYIDRGDDRRLI 286

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022146391.19.5e-0764.58myosin-binding protein 2 isoform X2 [Momordica charantia][more]
XP_022146389.19.5e-0764.58myosin-binding protein 2 isoform X1 [Momordica charantia] >XP_022146390.1 myosin... [more]
TYK30495.11.0e-0560.42myosin-binding protein 2 isoform X2 [Cucumis melo var. makuwa][more]
XP_008467120.11.0e-0560.42PREDICTED: myosin-binding protein 2 isoform X2 [Cucumis melo][more]
XP_016898800.11.0e-0560.42PREDICTED: myosin-binding protein 2 isoform X1 [Cucumis melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CX554.6e-0764.58myosin-binding protein 2 isoform X1 OS=Momordica charantia OX=3673 GN=LOC1110156... [more]
A0A6J1CZ804.6e-0764.58myosin-binding protein 2 isoform X2 OS=Momordica charantia OX=3673 GN=LOC1110156... [more]
A0A5A7TSE25.1e-0660.42Myosin-binding protein 2 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3E5B45.1e-0660.42Myosin-binding protein 2 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S4DSW35.1e-0660.42myosin-binding protein 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103504551 PE=4... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS001044.1MS001044.1mRNA