MS001015 (gene) Bitter gourd (TR) v1

Overview


Name	MS001015
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	protein SPIRAL1-like 2
Location	scaffold36: 863889 .. 865279 (-)
RNA-Seq Expression	MS001015
Synteny	MS001015

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTATCTGTTTGGTAGTGGAGAAGCTCCAAATGCAGGTGCCCGTGCTCCTGCCCGTGCCCCTAATGGTGGCCAAGCACCACCACCTTCTAATGAAGGGAAGACTGTATCGAAACCTCCTGCTGCTGCTGCTTCACCACCTGCAGATGTCACCAAGCAGATTCCGGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCAGACGGTCAGAACACTGGCAATTTCATAACGGTATGGTTGATTTTATGTTGATTCTGCTATTTACCTTGTCTAATCTAACTAGCATGTTGAGTAAACTGCCAGAGAAGTAATTTCGTTGCCCCTTTTGTGTGCCTGCTGGAAACCCANTAATCATCTCAAGAGCAGGGCAACCACCAGCGATTGCTGCAATGCCTCTGTCTGTTATTCCGGTTGACCTAACCCAAAAAAAAAAAAAAAGAAAAAGAAGTCAATAAATCTTGGATTAAACGTGTGTTGTACCCATATTACAAGACAACTTGATATTTAGCAAACCTTACTTCTCTCCTCATTTTCCTGTCCCTCCTTTTGAGTGTGGTATTTGACATGATACGCCACTTTTTCCTTTTCAAAATATTGGAAATACATCCTACATATTTCGAAAAGAGAGTATGACGTAGTTGTTAACTCAACAAACAAAAGTGTGGCATCACCATTCAATTGGACGCAATATTAAATGTTAACGCTTGGGATAAAATGAGTGGAAGATGTGCACTGTGCTAATTATTTAATTACTTGGATGCAAGTGATTATGTTTGTTATATCATAGAAGTTGCATCGCAATCATGTTAAGATCTATGATACCCCACTTTGCTCATTCTCAATTTTTCTATTAAGCAAATTTGTGTGACCCTGTTAGGCTATATTACACGCATTCTTTCATTTTTCTGCCTCATCTTTGGAAAGTTGGAGAAATTGCGCATTATAGCAATGACTTATCTTTGTGATTATTTTCTGAACTTGCAATAAGGGTCGTTCGCATCTCTTCAACTTGTTTTACATGTGTAAGGTCTCATAACTCCATAGAGGAATAAGAACTAAAAGCACCACCCAATTGGGGTCGGACACAAATGAGGTTGTAACTGATTAAAGAGCTAAAAAAGAATGACCAGGATGACCAGTTTTAGTGACAACTAAATGTAGGAGGATCAAACAGTTGTCCTGTAAGAGCTTAAAAGGGCACAACGGAGGATTTGTTTGGAAAAACCCTTTATATAGTGATTGATTAGTTTGGTTTGTGGGTGCAGGATCGGCCTTCAACCAAGGTGCACGCAGCCCCAGGCGGTGGATCGTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAA

mRNA sequence

GGCCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTATCTGTTTGGTAGTGGAGAAGCTCCAAATGCAGGTGCCCGTGCTCCTGCCCGTGCCCCTAATGGTGGCCAAGCACCACCACCTTCTAATGAAGGGAAGACTGTATCGAAACCTCCTGCTGCTGCTGCTTCACCACCTGCAGATGTCACCAAGCAGATTCCGGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCAGACGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTGCACGCAGCCCCAGGCGGTGGATCGTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAA

Coding sequence (CDS)

GGCCGTGGAGTTAGCAGTGGTGGGGGGCAGAGCTCACTGGGGTATCTGTTTGGTAGTGGAGAAGCTCCAAATGCAGGTGCCCGTGCTCCTGCCCGTGCCCCTAATGGTGGCCAAGCACCACCACCTTCTAATGAAGGGAAGACTGTATCGAAACCTCCTGCTGCTGCTGCTTCACCACCTGCAGATGTCACCAAGCAGATTCCGGCTGGTATTCATAGTAGCTCCTCAAACAACTATTTGAGGGCAGACGGTCAGAACACTGGCAATTTCATAACGGATCGGCCTTCAACCAAGGTGCACGCAGCCCCAGGCGGTGGATCGTCTCTGGATTATCTGTTTGGTGGTGCTGGTGGAAAA

Protein sequence

GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK

Homology

[Close]

BLAST of MS001015 vs. NCBI nr
Match: XP_022132002.1 (protein SPIRAL1-like 2 [Momordica charantia] >XP_022132003.1 protein SPIRAL1-like 2 [Momordica charantia])

HSP 1 Score: 224.9 bits (572), Expect = 3.6e-55
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPP 60
           GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPP
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPP 61

Query: 61  ADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           ADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 62  ADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

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BLAST of MS001015 vs. NCBI nr
Match: XP_008445444.1 (PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445446.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445447.1 PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >KAA0064770.1 protein SPIRAL1-like 1 [Cucumis melo var. makuwa])

HSP 1 Score: 190.7 bits (483), Expect = 7.5e-45
Identity = 108/124 (87.10%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAA 60
           GRGVSSGGGQSSLGYLFG G+APNAG      AP GG QAPPPSNEGKTVSKP    PAA
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAG------APKGGRQAPPPSNEGKTVSKPAVSKPAA 62

Query: 61  AASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 120
            ASPPAD+TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG
Sbjct: 63  TASPPADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 120

[Close]

BLAST of MS001015 vs. NCBI nr
Match: XP_038886245.1 (protein SPIRAL1-like 1 [Benincasa hispida])

HSP 1 Score: 188.7 bits (478), Expect = 2.8e-44
Identity = 108/124 (87.10%), Postives = 109/124 (87.90%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAA 60
           GRGVSSGGGQSSLGYLFG G+APNAG      AP GG QAPPP NEGKTVSKP    PAA
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAG------APKGGRQAPPPLNEGKTVSKPAVSKPAA 62

Query: 61  AASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 120
            ASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG
Sbjct: 63  TASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 120

[Close]

BLAST of MS001015 vs. NCBI nr
Match: XP_022961880.1 (protein SPIRAL1-like 2 [Cucurbita moschata] >XP_022997295.1 protein SPIRAL1-like 2 [Cucurbita maxima] >XP_023546068.1 protein SPIRAL1-like 2 [Cucurbita pepo subsp. pepo] >KAG6598640.1 Protein SPIRAL1-like 1, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029577.1 Protein SPIRAL1-like 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 3.7e-44
Identity = 108/123 (87.80%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKP----PAAA 60
           GRGVSSGGGQSSLGYLFGSGEAPNAG      AP GGQA PPSNEGK VSKP    PAA 
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPNAG------APKGGQA-PPSNEGKAVSKPAASKPAAT 61

Query: 61  ASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGA 120
           ASPPAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGA
Sbjct: 62  ASPPADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGA 117

[Close]

BLAST of MS001015 vs. NCBI nr
Match: XP_004144171.1 (protein SPIRAL1-like 1 [Cucumis sativus] >XP_004144172.1 protein SPIRAL1-like 1 [Cucumis sativus] >XP_031743708.1 protein SPIRAL1-like 1 [Cucumis sativus] >KGN47654.1 hypothetical protein Csa_018315 [Cucumis sativus])

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-42
Identity = 103/124 (83.06%), Postives = 108/124 (87.10%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAA 60
           GRGVSSGGGQSSLGYLFG G+APNAG      AP GG QAPPP +E KT+SKP    PAA
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAG------APKGGRQAPPPPSEAKTISKPAVSKPAA 62

Query: 61  AASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 120
            ASPPAD++KQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG
Sbjct: 63  TASPPADISKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 120

[Close]

BLAST of MS001015 vs. ExPASy Swiss-Prot
Match: B3H4F1 (Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.9e-31
Identity = 80/119 (67.23%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAA--AAS 60
           GRGVS GGGQSSLGYLFGSGEAP          P    AP PS+E   +S  P+    A+
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPK---------PAINNAPAPSSETLPISADPSPKHVAA 61

Query: 61  PPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 118
              +VTKQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  QTVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

[Close]

BLAST of MS001015 vs. ExPASy Swiss-Prot
Match: Q9LE54 (Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-29
Identity = 75/117 (64.10%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGA--RAPARAPNGGQAPPPSNEGKTVSKPPAAAAS 60
           GRGVS+GGGQSSLGYLFGSGEAP   A  + PA   +   APP             AAA+
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQ-----------AAAA 61

Query: 61  PPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 116
              D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  NAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

[Close]

BLAST of MS001015 vs. ExPASy Swiss-Prot
Match: Q7Y1L9 (Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.1e-27
Identity = 77/116 (66.38%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 2   RGVSSGGGQSSLGYLFGSGEAPNAGAR-APARAPNGGQAPPPSNEGKTVSKPPAAAASPP 61
           RG S+GGGQSSLGYLFG  EAP   A+ APA AP    AP P+     V+ P    +   
Sbjct: 3   RGGSAGGGQSSLGYLFGGNEAPKPAAKPAPAAAPAPAPAPAPA---AAVAAPAEKPSPAK 62

Query: 62  ADVTKQIPAGIHSS-SSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 116
           AD TKQIPAGI  S S+NNY RADGQNTGNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 63  ADATKQIPAGIQGSRSNNNYHRADGQNTGNFLTDRPSTKVHAAPGGGSSLGYLFGG 115

[Close]

BLAST of MS001015 vs. ExPASy Swiss-Prot
Match: Q2R0W8 (Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26
Identity = 74/116 (63.79%), Postives = 80/116 (68.97%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASP- 60
           GRGVSSGGGQSSLGYLFG GE   A    PA A      P P  +        AAAASP 
Sbjct: 4   GRGVSSGGGQSSLGYLFGGGETAPAAKAKPAAAAEKETTPAPVKKAAV-----AAAASPS 63

Query: 61  PADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 116
            A+  K+IPAGI S+ +NNY RA GQN GNF+TDRPSTKVHAAPGGGSSL YLFGG
Sbjct: 64  AAEKMKEIPAGIQSTQANNYFRAQGQNCGNFLTDRPSTKVHAAPGGGSSLGYLFGG 114

[Close]

BLAST of MS001015 vs. ExPASy Swiss-Prot
Match: Q2QQ99 (Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 2.3e-25
Identity = 70/115 (60.87%), Postives = 78/115 (67.83%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPP 60
           GRGVSSGGGQSSLGYLFG GEAP +     A  P   Q P PS+                
Sbjct: 2   GRGVSSGGGQSSLGYLFGGGEAPKS-----AEKPAPVQKPAPSSS--------------- 61

Query: 61  ADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 116
           A+  K+IPAGI SS +NNY+RA+GQN GNF+TDRPSTKV AAPGGGSSLDYLF G
Sbjct: 62  AEKLKEIPAGIQSSKANNYMRAEGQNCGNFLTDRPSTKVQAAPGGGSSLDYLFSG 96

[Close]

BLAST of MS001015 vs. ExPASy TrEMBL
Match: A0A6J1BSM5 (protein SPIRAL1-like 2 OS=Momordica charantia OX=3673 GN=LOC111004976 PE=3 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.7e-55
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPP 60
           GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPP
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAAAASPP 61

Query: 61  ADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120
           ADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK
Sbjct: 62  ADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAGGK 120

[Close]

BLAST of MS001015 vs. ExPASy TrEMBL
Match: A0A1S3BCR3 (protein SPIRAL1-like 1 OS=Cucumis melo OX=3656 GN=LOC103488465 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.6e-45
Identity = 108/124 (87.10%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAA 60
           GRGVSSGGGQSSLGYLFG G+APNAG      AP GG QAPPPSNEGKTVSKP    PAA
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAG------APKGGRQAPPPSNEGKTVSKPAVSKPAA 62

Query: 61  AASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 120
            ASPPAD+TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG
Sbjct: 63  TASPPADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 120

[Close]

BLAST of MS001015 vs. ExPASy TrEMBL
Match: A0A5A7VC71 (Protein SPIRAL1-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00750 PE=3 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.6e-45
Identity = 108/124 (87.10%), Postives = 110/124 (88.71%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGG-QAPPPSNEGKTVSKP----PAA 60
           GRGVSSGGGQSSLGYLFG G+APNAG      AP GG QAPPPSNEGKTVSKP    PAA
Sbjct: 3   GRGVSSGGGQSSLGYLFGDGDAPNAG------APKGGRQAPPPSNEGKTVSKPAVSKPAA 62

Query: 61  AASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 120
            ASPPAD+TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG
Sbjct: 63  TASPPADITKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 120

[Close]

BLAST of MS001015 vs. ExPASy TrEMBL
Match: A0A6J1K972 (protein SPIRAL1-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111492241 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 108/123 (87.80%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKP----PAAA 60
           GRGVSSGGGQSSLGYLFGSGEAPNAG      AP GGQA PPSNEGK VSKP    PAA 
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPNAG------APKGGQA-PPSNEGKAVSKPAASKPAAT 61

Query: 61  ASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGA 120
           ASPPAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGA
Sbjct: 62  ASPPADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGA 117

[Close]

BLAST of MS001015 vs. ExPASy TrEMBL
Match: A0A6J1HDG7 (protein SPIRAL1-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111462521 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.8e-44
Identity = 108/123 (87.80%), Postives = 108/123 (87.80%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKP----PAAA 60
           GRGVSSGGGQSSLGYLFGSGEAPNAG      AP GGQA PPSNEGK VSKP    PAA 
Sbjct: 2   GRGVSSGGGQSSLGYLFGSGEAPNAG------APKGGQA-PPSNEGKAVSKPAASKPAAT 61

Query: 61  ASPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGA 120
           ASPPAD TKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGA
Sbjct: 62  ASPPADATKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGA 117

[Close]

BLAST of MS001015 vs. TAIR 10
Match: AT1G26355.1 (SPIRAL1-like1 )

HSP 1 Score: 135.2 bits (339), Expect = 3.5e-32
Identity = 80/119 (67.23%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAPNGGQAPPPSNEGKTVSKPPAA--AAS 60
           GRGVS GGGQSSLGYLFGSGEAP          P    AP PS+E   +S  P+    A+
Sbjct: 2   GRGVSVGGGQSSLGYLFGSGEAPK---------PAINNAPAPSSETLPISADPSPKHVAA 61

Query: 61  PPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGGAG 118
              +VTKQIPAGI+ SS+NNY+RADGQNTGNF+TDRPSTKVHAAPGGGSSLDYLFGG G
Sbjct: 62  QTVNVTKQIPAGINKSSTNNYIRADGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFGGGG 111

[Close]

BLAST of MS001015 vs. TAIR 10
Match: AT1G69230.1 (SPIRAL1-like2 )

HSP 1 Score: 130.6 bits (327), Expect = 8.5e-31
Identity = 75/117 (64.10%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGA--RAPARAPNGGQAPPPSNEGKTVSKPPAAAAS 60
           GRGVS+GGGQSSLGYLFGSGEAP   A  + PA   +   APP             AAA+
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQ-----------AAAA 61

Query: 61  PPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 116
              D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  NAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

[Close]

BLAST of MS001015 vs. TAIR 10
Match: AT1G69230.2 (SPIRAL1-like2 )

HSP 1 Score: 130.6 bits (327), Expect = 8.5e-31
Identity = 75/117 (64.10%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGA--RAPARAPNGGQAPPPSNEGKTVSKPPAAAAS 60
           GRGVS+GGGQSSLGYLFGSGEAP   A  + PA   +   APP             AAA+
Sbjct: 2   GRGVSAGGGQSSLGYLFGSGEAPKLAAVNKTPAETESSAHAPPTQ-----------AAAA 61

Query: 61  PPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 116
              D  KQ+PAG++S+S+NNY+RA+GQNTGNFITDRPSTKVH+APGGGSSLDYLFGG
Sbjct: 62  NAVDSIKQVPAGLNSNSANNYMRAEGQNTGNFITDRPSTKVHSAPGGGSSLDYLFGG 107

[Close]

BLAST of MS001015 vs. TAIR 10
Match: AT2G03680.1 (spiral1 )

HSP 1 Score: 104.0 bits (258), Expect = 8.6e-23
Identity = 70/118 (59.32%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAP---NGGQAPPPSNEGKTVSKPPAAAA 60
           GRG S GGGQSSL YLFG          AP  AP   N G APP +    T +   A  +
Sbjct: 2   GRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTAT-ALTTATTS 61

Query: 61  SPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 116
             PA++ KQIPAGI  +  NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSLDYLF G
Sbjct: 62  VEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTG 117

[Close]

BLAST of MS001015 vs. TAIR 10
Match: AT2G03680.2 (spiral1 )

HSP 1 Score: 104.0 bits (258), Expect = 8.6e-23
Identity = 70/118 (59.32%), Postives = 78/118 (66.10%), Query Frame = 0


Query: 1   GRGVSSGGGQSSLGYLFGSGEAPNAGARAPARAP---NGGQAPPPSNEGKTVSKPPAAAA 60
           GRG S GGGQSSL YLFG          AP  AP   N G APP +    T +   A  +
Sbjct: 2   GRGNSCGGGQSSLDYLFGGDAPAPKPVPAPRPAPTESNNGPAPPVTAVTAT-ALTTATTS 61

Query: 61  SPPADVTKQIPAGIHSSSSNNYLRADGQNTGNFITDRPSTKVHAAPGGGSSLDYLFGG 116
             PA++ KQIPAGI  +  NNY RA+GQNTGNF+TDRPSTKVHAAPGGGSSLDYLF G
Sbjct: 62  VEPAELNKQIPAGI-KTPVNNYARAEGQNTGNFLTDRPSTKVHAAPGGGSSLDYLFTG 117

The following BLAST results are available for this feature:

BLAST of MS001015 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132002.1	3.6e-55	100.00	protein SPIRAL1-like 2 [Momordica charantia] >XP_022132003.1 protein SPIRAL1-lik...	[more]
XP_008445444.1	7.5e-45	87.10	PREDICTED: protein SPIRAL1-like 1 [Cucumis melo] >XP_008445446.1 PREDICTED: prot...	[more]
XP_038886245.1	2.8e-44	87.10	protein SPIRAL1-like 1 [Benincasa hispida]	[more]
XP_022961880.1	3.7e-44	87.80	protein SPIRAL1-like 2 [Cucurbita moschata] >XP_022997295.1 protein SPIRAL1-like...	[more]
XP_004144171.1	2.0e-42	83.06	protein SPIRAL1-like 1 [Cucumis sativus] >XP_004144172.1 protein SPIRAL1-like 1 ...	[more]

BLAST of MS001015 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B3H4F1	4.9e-31	67.23	Protein SPIRAL1-like 1 OS=Arabidopsis thaliana OX=3702 GN=SP1L1 PE=2 SV=1	[more]
Q9LE54	1.2e-29	64.10	Protein SPIRAL1-like 2 OS=Arabidopsis thaliana OX=3702 GN=SP1L2 PE=2 SV=1	[more]
Q7Y1L9	1.1e-27	66.38	Protein SPIRAL1-like 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0417800 ...	[more]
Q2R0W8	1.6e-26	63.79	Protein SPIRAL1-like 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0629400 ...	[more]
Q2QQ99	2.3e-25	60.87	Protein SPIRAL1-like 3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0502000 ...	[more]

BLAST of MS001015 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSM5	1.7e-55	100.00	protein SPIRAL1-like 2 OS=Momordica charantia OX=3673 GN=LOC111004976 PE=3 SV=1	[more]
A0A1S3BCR3	3.6e-45	87.10	protein SPIRAL1-like 1 OS=Cucumis melo OX=3656 GN=LOC103488465 PE=3 SV=1	[more]
A0A5A7VC71	3.6e-45	87.10	Protein SPIRAL1-like 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold8...	[more]
A0A6J1K972	1.8e-44	87.80	protein SPIRAL1-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111492241 PE=3 SV=1	[more]
A0A6J1HDG7	1.8e-44	87.80	protein SPIRAL1-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111462521 PE=3 SV=1	[more]

BLAST of MS001015 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26355.1	3.5e-32	67.23	SPIRAL1-like1	[more]
AT1G69230.1	8.5e-31	64.10	SPIRAL1-like2	[more]
AT1G69230.2	8.5e-31	64.10	SPIRAL1-like2	[more]
AT2G03680.1	8.6e-23	59.32	spiral1	[more]
AT2G03680.2	8.6e-23	59.32	spiral1	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..94
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..119
None	No IPR available	PANTHER	PTHR33403:SF28	PROTEIN SPIRAL1-LIKE 2	coord: 1..117
IPR039613	Protein SPIRAL1-like	PANTHER	PTHR33403	SPR1	coord: 1..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS001015.1	MS001015.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043622	cortical microtubule organization