Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCAACCAAAATTTACCAAACCCTAATTCCGAAAACTGGTTCGATTTTGAACAACTTGATCTCAAGGTTAAATCTGTGGAATTGAACACCGTTTTTCCGCCGTTTTGCTTCCAATCCTCGTCGGTCGGATCGGAAATTGCCGACGAAAGTGTGTTCTCGGATCCAGTGATGGAGCCCGATCTCGTGTGCGACGGTGGTTGTCTATGGTGGCTGTGTCGCCGGCGGTGTCGAAGACTGAGCATTTTATGGCTGCAGCGAAGGAATCTTTGGGTTCAGAAATCGGATTTGATGGAGATGATTTCGGCCGCAACTTCAGTGACCAATTCGCGGATTTGGAACGGGGATTGGGATATCATATCAAGGTTGATTTTGACCAGATTCTCCCCTCTGCCAGTCTAGATTTCCTCTCG
mRNA sequence
TCCAACCAAAATTTACCAAACCCTAATTCCGAAAACTGGTTCGATTTTGAACAACTTGATCTCAAGGTTAAATCTGTGGAATTGAACACCGTTTTTCCGCCGTTTTGCTTCCAATCCTCGTCGGTCGGATCGGAAATTGCCGACGAAAGTGTGTTCTCGGATCCAGTGATGGAGCCCGATCTCGTGTGCGACGGTGGTTGTCTATGGTGGCTGTGTCGCCGGCGGTGTCGAAGACTGAGCATTTTATGGCTGCAGCGAAGGAATCTTTGGGTTCAGAAATCGGATTTGATGGAGATGATTTCGGCCGCAACTTCAGTGACCAATTCGCGGATTTGGAACGGGGATTGGGATATCATATCAGTTGATTTTGACCAGATTCTCCCCTCTGCCAGTCTAGATTTCCTCTCG
Coding sequence (CDS)
TCCAACCAAAATTTACCAAACCCTAATTCCGAAAACTGGTTCGATTTTGAACAACTTGATCTCAAGGTTAAATCTGTGGAATTGAACACCGTTTTTCCGCCGTTTTGCTTCCAATCCTCGTCGGTCGGATCGGAAATTGCCGACGAAAGTGTGTTCTCGGATCCAGTGATGGAGCCCGATCTCGTGTGCGACGGTGGTTGTCTATGGTGGCTGTGTCGCCGGCGGTGTCGAAGACTGAGCATTTTATGGCTGCAGCGAAGGAATCTTTGGGTTCAGAAATCGGATTTGATGGAGATGATTTCGGCCGCAACTTCAGTGACCAATTCGCGGATTTGGAACGGGGATTGGGATATCATATCAGTTGATTTTGACCAGATTCTCCCCTCTGCCAGTCTAGATTTCCTCTCG
Protein sequence
SNQNLPNPNSENWFDFEQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEPDLVCDGGCLWWLCRRRCRRLSILWLQRRNLWVQKSDLMEMISAATSVTNSRIWNGDWDIISVDFDQILPSASLDFLS
Homology
BLAST of MS000970 vs. NCBI nr
Match:
XP_022147294.1 (probable WRKY transcription factor 46 isoform X1 [Momordica charantia])
HSP 1 Score: 134.4 bits (337), Expect = 7.3e-28
Identity = 79/142 (55.63%), Postives = 92/142 (64.79%), Query Frame = 0
Query: 1 SNQNLPNPNSENWFDFEQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP- 60
+NQNLP+PNS+ WFDFE DLKVKS +L+TVFPPFCF SSSVGSE+ADE+VF DP+ +P
Sbjct: 195 TNQNLPSPNSQIWFDFEHHDLKVKSEDLDTVFPPFCFPSSSVGSEVADENVFYDPMTDPA 254
Query: 61 DLVCDGGCLWWLCRRRCRRLSIL----WLQ-RRNLWVQKSDLMEMISAATSVTNSRIWNG 120
LV GG L W + ++SDL E+ISA TSV NS IWNG
Sbjct: 255 PLVGHGGLSAVAVSPAASETEHLAAWDWSGCGGGIPSEQSDLTEIISAETSVNNSPIWNG 314
Query: 121 DWDIISVDFDQILPSASLDFLS 137
DWD V FDQ P SLDFLS
Sbjct: 315 DWD-FKVGFDQNFPFDSLDFLS 335
BLAST of MS000970 vs. NCBI nr
Match:
XP_022147296.1 (probable WRKY transcription factor 46 isoform X2 [Momordica charantia])
HSP 1 Score: 120.2 bits (300), Expect = 1.4e-23
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 0
Query: 1 SNQNLPNPNSENWFDFEQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP- 60
+NQNLP+PNS+ WFDFE DLKVKS +L+TVFPPFCF SSSVGSE+ADE+VF DP+ +P
Sbjct: 195 TNQNLPSPNSQIWFDFEHHDLKVKSEDLDTVFPPFCFPSSSVGSEVADENVFYDPMTDPA 254
Query: 61 DLVCDGGCLWWLCRRRCRRLSIL----WLQ-RRNLWVQKSDLMEMISAATSVTNSRIWNG 118
LV GG L W + ++SDL E+ISA TSV NS IWNG
Sbjct: 255 PLVGHGGLSAVAVSPAASETEHLAAWDWSGCGGGIPSEQSDLTEIISAETSVNNSPIWNG 314
BLAST of MS000970 vs. NCBI nr
Match:
XP_022974644.1 (probable WRKY transcription factor 46 [Cucurbita maxima])
HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 61/148 (41.22%), Postives = 80/148 (54.05%), Query Frame = 0
Query: 1 SNQNLPNPNSENWFDF---EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVM 60
++QN NPNSE F+F + LK+K+ + + VFPPFCF GSE DE+VF + +M
Sbjct: 206 THQNQQNPNSEILFNFGEQQHFGLKIKTEDFDDVFPPFCF-----GSETVDENVFLEQMM 265
Query: 61 EPDLVCDGGCLWWLCRRRCRRLSILW-LQRRNLWVQ------KSDLMEMISAATSVTNSR 120
EP V DG W W L +Q +S++ EM+SA TSVTNS
Sbjct: 266 EPGFVADGN--WSAAAVSSATSETAWDLSGYGGEIQGVQSSEQSNMTEMVSATTSVTNSP 325
Query: 121 IWNGDWDII--SVDFDQILPSASLDFLS 137
I NGDWD+ +DFDQ LDF+S
Sbjct: 326 IGNGDWDLSLDKIDFDQFFHFDRLDFIS 346
BLAST of MS000970 vs. NCBI nr
Match:
XP_022974955.1 (probable WRKY transcription factor 46 isoform X1 [Cucurbita maxima] >XP_022974956.1 probable WRKY transcription factor 46 isoform X2 [Cucurbita maxima])
HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 60/146 (41.10%), Postives = 78/146 (53.42%), Query Frame = 0
Query: 1 SNQNLPNPNSENWFDF-EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP 60
++QN NPNSE F+F EQ +K+ + + VFPPFCF GSE DE VF + +MEP
Sbjct: 189 THQNQQNPNSEILFNFGEQQHFGLKTEDFDDVFPPFCF-----GSETVDEDVFLEQMMEP 248
Query: 61 DLVCDGGCLWWLCRRRCRRLSILW-LQRRNLWVQ------KSDLMEMISAATSVTNSRIW 120
V DG W W L +Q +S++ EM+SA TSVTNS I
Sbjct: 249 GFVADGN--WSAAAVSSATSETAWDLSGYGGEIQGVQSSEQSNMTEMVSATTSVTNSPIG 308
Query: 121 NGDWDII--SVDFDQILPSASLDFLS 137
NGDW++ +DFDQ LDF+S
Sbjct: 309 NGDWELSLDKIDFDQFFHFDRLDFIS 327
BLAST of MS000970 vs. NCBI nr
Match:
XP_023539564.1 (probable WRKY transcription factor 46 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 86.3 bits (212), Expect = 2.3e-13
Identity = 59/147 (40.14%), Postives = 78/147 (53.06%), Query Frame = 0
Query: 1 SNQNLPNPNSENWFDF-EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP 60
++QN NPNSE F+F +Q +K+ + + VFPPF F GSE DE+VF + +MEP
Sbjct: 194 THQNQQNPNSEIIFNFGDQQHFGLKTEDFDNVFPPFSF-----GSETVDENVFLESMMEP 253
Query: 61 DLVCDGGCLWWLCRRRCRRLSILW--------LQRRNLWVQKSDLMEMISAATSVTNSRI 120
V DG W W +Q ++S++ EM+SA TSVTNS I
Sbjct: 254 GFVADGN--WSAAAVSSATSETAWDFSGYGGEIQGVQS-SEQSNMTEMVSATTSVTNSPI 313
Query: 121 WNGDWDII--SVDFDQILPSASLDFLS 137
NGDWD+ VDFDQ LDF+S
Sbjct: 314 GNGDWDLSLDKVDFDQFFHFDCLDFIS 332
BLAST of MS000970 vs. ExPASy TrEMBL
Match:
A0A6J1D0K8 (probable WRKY transcription factor 46 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016283 PE=4 SV=1)
HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28
Identity = 79/142 (55.63%), Postives = 92/142 (64.79%), Query Frame = 0
Query: 1 SNQNLPNPNSENWFDFEQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP- 60
+NQNLP+PNS+ WFDFE DLKVKS +L+TVFPPFCF SSSVGSE+ADE+VF DP+ +P
Sbjct: 195 TNQNLPSPNSQIWFDFEHHDLKVKSEDLDTVFPPFCFPSSSVGSEVADENVFYDPMTDPA 254
Query: 61 DLVCDGGCLWWLCRRRCRRLSIL----WLQ-RRNLWVQKSDLMEMISAATSVTNSRIWNG 120
LV GG L W + ++SDL E+ISA TSV NS IWNG
Sbjct: 255 PLVGHGGLSAVAVSPAASETEHLAAWDWSGCGGGIPSEQSDLTEIISAETSVNNSPIWNG 314
Query: 121 DWDIISVDFDQILPSASLDFLS 137
DWD V FDQ P SLDFLS
Sbjct: 315 DWD-FKVGFDQNFPFDSLDFLS 335
BLAST of MS000970 vs. ExPASy TrEMBL
Match:
A0A6J1D1X8 (probable WRKY transcription factor 46 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016283 PE=4 SV=1)
HSP 1 Score: 120.2 bits (300), Expect = 6.9e-24
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 0
Query: 1 SNQNLPNPNSENWFDFEQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP- 60
+NQNLP+PNS+ WFDFE DLKVKS +L+TVFPPFCF SSSVGSE+ADE+VF DP+ +P
Sbjct: 195 TNQNLPSPNSQIWFDFEHHDLKVKSEDLDTVFPPFCFPSSSVGSEVADENVFYDPMTDPA 254
Query: 61 DLVCDGGCLWWLCRRRCRRLSIL----WLQ-RRNLWVQKSDLMEMISAATSVTNSRIWNG 118
LV GG L W + ++SDL E+ISA TSV NS IWNG
Sbjct: 255 PLVGHGGLSAVAVSPAASETEHLAAWDWSGCGGGIPSEQSDLTEIISAETSVNNSPIWNG 314
BLAST of MS000970 vs. ExPASy TrEMBL
Match:
A0A6J1II79 (probable WRKY transcription factor 46 OS=Cucurbita maxima OX=3661 GN=LOC111473324 PE=4 SV=1)
HSP 1 Score: 94.0 bits (232), Expect = 5.3e-16
Identity = 61/148 (41.22%), Postives = 80/148 (54.05%), Query Frame = 0
Query: 1 SNQNLPNPNSENWFDF---EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVM 60
++QN NPNSE F+F + LK+K+ + + VFPPFCF GSE DE+VF + +M
Sbjct: 206 THQNQQNPNSEILFNFGEQQHFGLKIKTEDFDDVFPPFCF-----GSETVDENVFLEQMM 265
Query: 61 EPDLVCDGGCLWWLCRRRCRRLSILW-LQRRNLWVQ------KSDLMEMISAATSVTNSR 120
EP V DG W W L +Q +S++ EM+SA TSVTNS
Sbjct: 266 EPGFVADGN--WSAAAVSSATSETAWDLSGYGGEIQGVQSSEQSNMTEMVSATTSVTNSP 325
Query: 121 IWNGDWDII--SVDFDQILPSASLDFLS 137
I NGDWD+ +DFDQ LDF+S
Sbjct: 326 IGNGDWDLSLDKIDFDQFFHFDRLDFIS 346
BLAST of MS000970 vs. ExPASy TrEMBL
Match:
A0A6J1IFB8 (probable WRKY transcription factor 46 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473778 PE=4 SV=1)
HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 60/146 (41.10%), Postives = 78/146 (53.42%), Query Frame = 0
Query: 1 SNQNLPNPNSENWFDF-EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP 60
++QN NPNSE F+F EQ +K+ + + VFPPFCF GSE DE VF + +MEP
Sbjct: 189 THQNQQNPNSEILFNFGEQQHFGLKTEDFDDVFPPFCF-----GSETVDEDVFLEQMMEP 248
Query: 61 DLVCDGGCLWWLCRRRCRRLSILW-LQRRNLWVQ------KSDLMEMISAATSVTNSRIW 120
V DG W W L +Q +S++ EM+SA TSVTNS I
Sbjct: 249 GFVADGN--WSAAAVSSATSETAWDLSGYGGEIQGVQSSEQSNMTEMVSATTSVTNSPIG 308
Query: 121 NGDWDII--SVDFDQILPSASLDFLS 137
NGDW++ +DFDQ LDF+S
Sbjct: 309 NGDWELSLDKIDFDQFFHFDRLDFIS 327
BLAST of MS000970 vs. ExPASy TrEMBL
Match:
A0A6J1G5P2 (probable WRKY transcription factor 46 OS=Cucurbita moschata OX=3662 GN=LOC111451088 PE=4 SV=1)
HSP 1 Score: 81.3 bits (199), Expect = 3.5e-12
Identity = 58/147 (39.46%), Postives = 76/147 (51.70%), Query Frame = 0
Query: 1 SNQNLPNPNSENWFDF-EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP 60
++QN NPNSE F+F EQ +K+ + + VFPPF F GSE E+VF + +ME
Sbjct: 194 THQNQKNPNSEILFNFGEQQHFGLKTEDFDDVFPPFSF-----GSETVHENVFLESMMET 253
Query: 61 DLVCDGGCLWWLCRRRCRRLSILW--------LQRRNLWVQKSDLMEMISAATSVTNSRI 120
V DG W W +Q ++S++ EM+SA TSVTNS I
Sbjct: 254 GFVADGN--WSAAAVSSATSETAWDFSGYGGEIQGVQS-SEQSNMTEMVSATTSVTNSPI 313
Query: 121 WNGDWDII--SVDFDQILPSASLDFLS 137
NGDWD+ VDFDQ LDF+S
Sbjct: 314 GNGDWDLSLDKVDFDQFFLFDCLDFIS 332
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022147294.1 | 7.3e-28 | 55.63 | probable WRKY transcription factor 46 isoform X1 [Momordica charantia] | [more] |
XP_022147296.1 | 1.4e-23 | 55.28 | probable WRKY transcription factor 46 isoform X2 [Momordica charantia] | [more] |
XP_022974644.1 | 1.1e-15 | 41.22 | probable WRKY transcription factor 46 [Cucurbita maxima] | [more] |
XP_022974955.1 | 1.6e-14 | 41.10 | probable WRKY transcription factor 46 isoform X1 [Cucurbita maxima] >XP_02297495... | [more] |
XP_023539564.1 | 2.3e-13 | 40.14 | probable WRKY transcription factor 46 [Cucurbita pepo subsp. pepo] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1D0K8 | 3.5e-28 | 55.63 | probable WRKY transcription factor 46 isoform X1 OS=Momordica charantia OX=3673 ... | [more] |
A0A6J1D1X8 | 6.9e-24 | 55.28 | probable WRKY transcription factor 46 isoform X2 OS=Momordica charantia OX=3673 ... | [more] |
A0A6J1II79 | 5.3e-16 | 41.22 | probable WRKY transcription factor 46 OS=Cucurbita maxima OX=3661 GN=LOC11147332... | [more] |
A0A6J1IFB8 | 7.6e-15 | 41.10 | probable WRKY transcription factor 46 isoform X1 OS=Cucurbita maxima OX=3661 GN=... | [more] |
A0A6J1G5P2 | 3.5e-12 | 39.46 | probable WRKY transcription factor 46 OS=Cucurbita moschata OX=3662 GN=LOC111451... | [more] |
Match Name | E-value | Identity | Description | |