MS000970 (gene) Bitter gourd (TR) v1

Overview
NameMS000970
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
DescriptionWRKY domain-containing protein
Locationscaffold36: 541169 .. 541578 (+)
RNA-Seq ExpressionMS000970
SyntenyMS000970
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCAACCAAAATTTACCAAACCCTAATTCCGAAAACTGGTTCGATTTTGAACAACTTGATCTCAAGGTTAAATCTGTGGAATTGAACACCGTTTTTCCGCCGTTTTGCTTCCAATCCTCGTCGGTCGGATCGGAAATTGCCGACGAAAGTGTGTTCTCGGATCCAGTGATGGAGCCCGATCTCGTGTGCGACGGTGGTTGTCTATGGTGGCTGTGTCGCCGGCGGTGTCGAAGACTGAGCATTTTATGGCTGCAGCGAAGGAATCTTTGGGTTCAGAAATCGGATTTGATGGAGATGATTTCGGCCGCAACTTCAGTGACCAATTCGCGGATTTGGAACGGGGATTGGGATATCATATCAAGGTTGATTTTGACCAGATTCTCCCCTCTGCCAGTCTAGATTTCCTCTCG

mRNA sequence

TCCAACCAAAATTTACCAAACCCTAATTCCGAAAACTGGTTCGATTTTGAACAACTTGATCTCAAGGTTAAATCTGTGGAATTGAACACCGTTTTTCCGCCGTTTTGCTTCCAATCCTCGTCGGTCGGATCGGAAATTGCCGACGAAAGTGTGTTCTCGGATCCAGTGATGGAGCCCGATCTCGTGTGCGACGGTGGTTGTCTATGGTGGCTGTGTCGCCGGCGGTGTCGAAGACTGAGCATTTTATGGCTGCAGCGAAGGAATCTTTGGGTTCAGAAATCGGATTTGATGGAGATGATTTCGGCCGCAACTTCAGTGACCAATTCGCGGATTTGGAACGGGGATTGGGATATCATATCAGTTGATTTTGACCAGATTCTCCCCTCTGCCAGTCTAGATTTCCTCTCG

Coding sequence (CDS)

TCCAACCAAAATTTACCAAACCCTAATTCCGAAAACTGGTTCGATTTTGAACAACTTGATCTCAAGGTTAAATCTGTGGAATTGAACACCGTTTTTCCGCCGTTTTGCTTCCAATCCTCGTCGGTCGGATCGGAAATTGCCGACGAAAGTGTGTTCTCGGATCCAGTGATGGAGCCCGATCTCGTGTGCGACGGTGGTTGTCTATGGTGGCTGTGTCGCCGGCGGTGTCGAAGACTGAGCATTTTATGGCTGCAGCGAAGGAATCTTTGGGTTCAGAAATCGGATTTGATGGAGATGATTTCGGCCGCAACTTCAGTGACCAATTCGCGGATTTGGAACGGGGATTGGGATATCATATCAGTTGATTTTGACCAGATTCTCCCCTCTGCCAGTCTAGATTTCCTCTCG

Protein sequence

SNQNLPNPNSENWFDFEQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEPDLVCDGGCLWWLCRRRCRRLSILWLQRRNLWVQKSDLMEMISAATSVTNSRIWNGDWDIISVDFDQILPSASLDFLS
Homology
BLAST of MS000970 vs. NCBI nr
Match: XP_022147294.1 (probable WRKY transcription factor 46 isoform X1 [Momordica charantia])

HSP 1 Score: 134.4 bits (337), Expect = 7.3e-28
Identity = 79/142 (55.63%), Postives = 92/142 (64.79%), Query Frame = 0

Query: 1   SNQNLPNPNSENWFDFEQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP- 60
           +NQNLP+PNS+ WFDFE  DLKVKS +L+TVFPPFCF SSSVGSE+ADE+VF DP+ +P 
Sbjct: 195 TNQNLPSPNSQIWFDFEHHDLKVKSEDLDTVFPPFCFPSSSVGSEVADENVFYDPMTDPA 254

Query: 61  DLVCDGGCLWWLCRRRCRRLSIL----WLQ-RRNLWVQKSDLMEMISAATSVTNSRIWNG 120
            LV  GG               L    W      +  ++SDL E+ISA TSV NS IWNG
Sbjct: 255 PLVGHGGLSAVAVSPAASETEHLAAWDWSGCGGGIPSEQSDLTEIISAETSVNNSPIWNG 314

Query: 121 DWDIISVDFDQILPSASLDFLS 137
           DWD   V FDQ  P  SLDFLS
Sbjct: 315 DWD-FKVGFDQNFPFDSLDFLS 335

BLAST of MS000970 vs. NCBI nr
Match: XP_022147296.1 (probable WRKY transcription factor 46 isoform X2 [Momordica charantia])

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-23
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 0

Query: 1   SNQNLPNPNSENWFDFEQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP- 60
           +NQNLP+PNS+ WFDFE  DLKVKS +L+TVFPPFCF SSSVGSE+ADE+VF DP+ +P 
Sbjct: 195 TNQNLPSPNSQIWFDFEHHDLKVKSEDLDTVFPPFCFPSSSVGSEVADENVFYDPMTDPA 254

Query: 61  DLVCDGGCLWWLCRRRCRRLSIL----WLQ-RRNLWVQKSDLMEMISAATSVTNSRIWNG 118
            LV  GG               L    W      +  ++SDL E+ISA TSV NS IWNG
Sbjct: 255 PLVGHGGLSAVAVSPAASETEHLAAWDWSGCGGGIPSEQSDLTEIISAETSVNNSPIWNG 314

BLAST of MS000970 vs. NCBI nr
Match: XP_022974644.1 (probable WRKY transcription factor 46 [Cucurbita maxima])

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 61/148 (41.22%), Postives = 80/148 (54.05%), Query Frame = 0

Query: 1   SNQNLPNPNSENWFDF---EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVM 60
           ++QN  NPNSE  F+F   +   LK+K+ + + VFPPFCF     GSE  DE+VF + +M
Sbjct: 206 THQNQQNPNSEILFNFGEQQHFGLKIKTEDFDDVFPPFCF-----GSETVDENVFLEQMM 265

Query: 61  EPDLVCDGGCLWWLCRRRCRRLSILW-LQRRNLWVQ------KSDLMEMISAATSVTNSR 120
           EP  V DG   W             W L      +Q      +S++ EM+SA TSVTNS 
Sbjct: 266 EPGFVADGN--WSAAAVSSATSETAWDLSGYGGEIQGVQSSEQSNMTEMVSATTSVTNSP 325

Query: 121 IWNGDWDII--SVDFDQILPSASLDFLS 137
           I NGDWD+    +DFDQ      LDF+S
Sbjct: 326 IGNGDWDLSLDKIDFDQFFHFDRLDFIS 346

BLAST of MS000970 vs. NCBI nr
Match: XP_022974955.1 (probable WRKY transcription factor 46 isoform X1 [Cucurbita maxima] >XP_022974956.1 probable WRKY transcription factor 46 isoform X2 [Cucurbita maxima])

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-14
Identity = 60/146 (41.10%), Postives = 78/146 (53.42%), Query Frame = 0

Query: 1   SNQNLPNPNSENWFDF-EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP 60
           ++QN  NPNSE  F+F EQ    +K+ + + VFPPFCF     GSE  DE VF + +MEP
Sbjct: 189 THQNQQNPNSEILFNFGEQQHFGLKTEDFDDVFPPFCF-----GSETVDEDVFLEQMMEP 248

Query: 61  DLVCDGGCLWWLCRRRCRRLSILW-LQRRNLWVQ------KSDLMEMISAATSVTNSRIW 120
             V DG   W             W L      +Q      +S++ EM+SA TSVTNS I 
Sbjct: 249 GFVADGN--WSAAAVSSATSETAWDLSGYGGEIQGVQSSEQSNMTEMVSATTSVTNSPIG 308

Query: 121 NGDWDII--SVDFDQILPSASLDFLS 137
           NGDW++    +DFDQ      LDF+S
Sbjct: 309 NGDWELSLDKIDFDQFFHFDRLDFIS 327

BLAST of MS000970 vs. NCBI nr
Match: XP_023539564.1 (probable WRKY transcription factor 46 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-13
Identity = 59/147 (40.14%), Postives = 78/147 (53.06%), Query Frame = 0

Query: 1   SNQNLPNPNSENWFDF-EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP 60
           ++QN  NPNSE  F+F +Q    +K+ + + VFPPF F     GSE  DE+VF + +MEP
Sbjct: 194 THQNQQNPNSEIIFNFGDQQHFGLKTEDFDNVFPPFSF-----GSETVDENVFLESMMEP 253

Query: 61  DLVCDGGCLWWLCRRRCRRLSILW--------LQRRNLWVQKSDLMEMISAATSVTNSRI 120
             V DG   W             W        +Q      ++S++ EM+SA TSVTNS I
Sbjct: 254 GFVADGN--WSAAAVSSATSETAWDFSGYGGEIQGVQS-SEQSNMTEMVSATTSVTNSPI 313

Query: 121 WNGDWDII--SVDFDQILPSASLDFLS 137
            NGDWD+    VDFDQ      LDF+S
Sbjct: 314 GNGDWDLSLDKVDFDQFFHFDCLDFIS 332

BLAST of MS000970 vs. ExPASy TrEMBL
Match: A0A6J1D0K8 (probable WRKY transcription factor 46 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111016283 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28
Identity = 79/142 (55.63%), Postives = 92/142 (64.79%), Query Frame = 0

Query: 1   SNQNLPNPNSENWFDFEQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP- 60
           +NQNLP+PNS+ WFDFE  DLKVKS +L+TVFPPFCF SSSVGSE+ADE+VF DP+ +P 
Sbjct: 195 TNQNLPSPNSQIWFDFEHHDLKVKSEDLDTVFPPFCFPSSSVGSEVADENVFYDPMTDPA 254

Query: 61  DLVCDGGCLWWLCRRRCRRLSIL----WLQ-RRNLWVQKSDLMEMISAATSVTNSRIWNG 120
            LV  GG               L    W      +  ++SDL E+ISA TSV NS IWNG
Sbjct: 255 PLVGHGGLSAVAVSPAASETEHLAAWDWSGCGGGIPSEQSDLTEIISAETSVNNSPIWNG 314

Query: 121 DWDIISVDFDQILPSASLDFLS 137
           DWD   V FDQ  P  SLDFLS
Sbjct: 315 DWD-FKVGFDQNFPFDSLDFLS 335

BLAST of MS000970 vs. ExPASy TrEMBL
Match: A0A6J1D1X8 (probable WRKY transcription factor 46 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111016283 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.9e-24
Identity = 68/123 (55.28%), Postives = 81/123 (65.85%), Query Frame = 0

Query: 1   SNQNLPNPNSENWFDFEQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP- 60
           +NQNLP+PNS+ WFDFE  DLKVKS +L+TVFPPFCF SSSVGSE+ADE+VF DP+ +P 
Sbjct: 195 TNQNLPSPNSQIWFDFEHHDLKVKSEDLDTVFPPFCFPSSSVGSEVADENVFYDPMTDPA 254

Query: 61  DLVCDGGCLWWLCRRRCRRLSIL----WLQ-RRNLWVQKSDLMEMISAATSVTNSRIWNG 118
            LV  GG               L    W      +  ++SDL E+ISA TSV NS IWNG
Sbjct: 255 PLVGHGGLSAVAVSPAASETEHLAAWDWSGCGGGIPSEQSDLTEIISAETSVNNSPIWNG 314

BLAST of MS000970 vs. ExPASy TrEMBL
Match: A0A6J1II79 (probable WRKY transcription factor 46 OS=Cucurbita maxima OX=3661 GN=LOC111473324 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.3e-16
Identity = 61/148 (41.22%), Postives = 80/148 (54.05%), Query Frame = 0

Query: 1   SNQNLPNPNSENWFDF---EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVM 60
           ++QN  NPNSE  F+F   +   LK+K+ + + VFPPFCF     GSE  DE+VF + +M
Sbjct: 206 THQNQQNPNSEILFNFGEQQHFGLKIKTEDFDDVFPPFCF-----GSETVDENVFLEQMM 265

Query: 61  EPDLVCDGGCLWWLCRRRCRRLSILW-LQRRNLWVQ------KSDLMEMISAATSVTNSR 120
           EP  V DG   W             W L      +Q      +S++ EM+SA TSVTNS 
Sbjct: 266 EPGFVADGN--WSAAAVSSATSETAWDLSGYGGEIQGVQSSEQSNMTEMVSATTSVTNSP 325

Query: 121 IWNGDWDII--SVDFDQILPSASLDFLS 137
           I NGDWD+    +DFDQ      LDF+S
Sbjct: 326 IGNGDWDLSLDKIDFDQFFHFDRLDFIS 346

BLAST of MS000970 vs. ExPASy TrEMBL
Match: A0A6J1IFB8 (probable WRKY transcription factor 46 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111473778 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 7.6e-15
Identity = 60/146 (41.10%), Postives = 78/146 (53.42%), Query Frame = 0

Query: 1   SNQNLPNPNSENWFDF-EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP 60
           ++QN  NPNSE  F+F EQ    +K+ + + VFPPFCF     GSE  DE VF + +MEP
Sbjct: 189 THQNQQNPNSEILFNFGEQQHFGLKTEDFDDVFPPFCF-----GSETVDEDVFLEQMMEP 248

Query: 61  DLVCDGGCLWWLCRRRCRRLSILW-LQRRNLWVQ------KSDLMEMISAATSVTNSRIW 120
             V DG   W             W L      +Q      +S++ EM+SA TSVTNS I 
Sbjct: 249 GFVADGN--WSAAAVSSATSETAWDLSGYGGEIQGVQSSEQSNMTEMVSATTSVTNSPIG 308

Query: 121 NGDWDII--SVDFDQILPSASLDFLS 137
           NGDW++    +DFDQ      LDF+S
Sbjct: 309 NGDWELSLDKIDFDQFFHFDRLDFIS 327

BLAST of MS000970 vs. ExPASy TrEMBL
Match: A0A6J1G5P2 (probable WRKY transcription factor 46 OS=Cucurbita moschata OX=3662 GN=LOC111451088 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 3.5e-12
Identity = 58/147 (39.46%), Postives = 76/147 (51.70%), Query Frame = 0

Query: 1   SNQNLPNPNSENWFDF-EQLDLKVKSVELNTVFPPFCFQSSSVGSEIADESVFSDPVMEP 60
           ++QN  NPNSE  F+F EQ    +K+ + + VFPPF F     GSE   E+VF + +ME 
Sbjct: 194 THQNQKNPNSEILFNFGEQQHFGLKTEDFDDVFPPFSF-----GSETVHENVFLESMMET 253

Query: 61  DLVCDGGCLWWLCRRRCRRLSILW--------LQRRNLWVQKSDLMEMISAATSVTNSRI 120
             V DG   W             W        +Q      ++S++ EM+SA TSVTNS I
Sbjct: 254 GFVADGN--WSAAAVSSATSETAWDFSGYGGEIQGVQS-SEQSNMTEMVSATTSVTNSPI 313

Query: 121 WNGDWDII--SVDFDQILPSASLDFLS 137
            NGDWD+    VDFDQ      LDF+S
Sbjct: 314 GNGDWDLSLDKVDFDQFFLFDCLDFIS 332

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022147294.17.3e-2855.63probable WRKY transcription factor 46 isoform X1 [Momordica charantia][more]
XP_022147296.11.4e-2355.28probable WRKY transcription factor 46 isoform X2 [Momordica charantia][more]
XP_022974644.11.1e-1541.22probable WRKY transcription factor 46 [Cucurbita maxima][more]
XP_022974955.11.6e-1441.10probable WRKY transcription factor 46 isoform X1 [Cucurbita maxima] >XP_02297495... [more]
XP_023539564.12.3e-1340.14probable WRKY transcription factor 46 [Cucurbita pepo subsp. pepo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D0K83.5e-2855.63probable WRKY transcription factor 46 isoform X1 OS=Momordica charantia OX=3673 ... [more]
A0A6J1D1X86.9e-2455.28probable WRKY transcription factor 46 isoform X2 OS=Momordica charantia OX=3673 ... [more]
A0A6J1II795.3e-1641.22probable WRKY transcription factor 46 OS=Cucurbita maxima OX=3661 GN=LOC11147332... [more]
A0A6J1IFB87.6e-1541.10probable WRKY transcription factor 46 isoform X1 OS=Cucurbita maxima OX=3661 GN=... [more]
A0A6J1G5P23.5e-1239.46probable WRKY transcription factor 46 OS=Cucurbita moschata OX=3662 GN=LOC111451... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000970.1MS000970.1mRNA