MS000913 (gene) Bitter gourd (TR) v1

Overview
NameMS000913
Typegene
OrganismMomordica charantia cv. TR (Bitter gourd (TR) v1)
Descriptionprotein POOR HOMOLOGOUS SYNAPSIS 1
Locationscaffold36: 250469 .. 252181 (-)
RNA-Seq ExpressionMS000913
SyntenyMS000913
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGATTCCAAGGTGTGGTGCGGAGCGAAGAGGAAGCGGAAATGCCCGCTGCTGCCATTAGAGACCAGTGGGAAGTTCAATTCTCTCGCTTCATTTGCTATCCAAGTAGCGCCGCCACCACCACCAACAACGCCAGCCTCCATCCTCTCTTTCCCCGTCTCCGGAATCGCCCGCCTCGAGGCACATGGATCTCTTCGTCTTCCACTGCTATTCTGCAACTCCTCCACCGTTGCTCCTCCCCTGATTTGATTCTCACCGTGCGTTTTCGAGATAAGATCCTTGTGAGTTCTTGATTTTCCACTCTCTCCAACTTTCTAATCGCATCTGTACGAGTAGACTTGTGAGAGAAGAAATGTTTGTTTACGCTAAATATTATACGTTTGCTTCTTCAGGATCCTTGAACGGTATCGTTCATGCATTTAATATTTTTACTATTTCATTTCTTTGCCATTGGTTTGAATTCATGTAGTTTCCGATCAATGGCCCTGAAATCAATCAGATCATTTGCTAGTCTCCGCCAAAGGAGTCTGTCTCTTGTTTTCCTCGAATTCCCCCATCCCCTCACGGCATGGAGGATTACCTTCTTGGCTTCCTGTTGACCTCATTTTATACGCTTTAAGCGGTAGTTATTTCATTTACTACACCTTAGTGGATCCGGTGGAACGTGGGAAGTTCTACTTTGTAAGATGATTATGTGAAGTGAACCAACCTTCCTCTGGCAATTCAAATGCAGCATCTTATAATGAGTTCAGTGGTTTATTACAATATTATCCTGCCAAAATTCCAATCTAAGACTCGATTTCTATTATTTGGATGTGTTAACCGCAATGGATTAAGCATGTATTACTGGCATACTGATGTAGGAAGAGCACTACCTCTCCAAGCTTCATTTCTCATGGCCTCAGGTGTCCTGTATCTCTGGTTTTCCTGCCAGAGGCACCAGAACTATTTTTGGAAGTTATAGAGATTCAGCTAACGAGGTAAGTCATTATATATGTTCATGAAGATTTTGTCAATTTCTGTGGTGCTTTGTGATTTCAAAAGTTTTCTGAGGATGAGTTTTGGGTTGTTGAACCTCACAGCACACTCGTTTGTCTTTGCAGATCCAAAAGTTTGCCCTAAGATTTTCAACAGCTTACGAAACTGATTCATTTGTGAACATTCTCAAGGTAATTAATATGAATTTCTTTTATGGTAAGGTTTGATGGAAGATTTTTCGTTCTATAACCTTACTGCTGCTATCTTGTTTCAGGAAATGGCGGAGGATGCAAGAGATATTCAACCAATAAGCAGCGAATTTGGGTCTCAGATTACAACACAATCCGAGTTATTATCTTCAAACAGACCGTCTGATAGGTGAATGAAAATTCTCGTATAATCAATAATCTAATGCATCATTTTCTTTTTGTTGTCACAGCGAGAAGGAGATGTTGATGTATTTTCTGTTTTCAGCCTTTGTGAAGAATTGACCAATTCTATTGTCCAGCCTTACACTCCTGAAATGCCTTTGAGCTTAAAAGATACTGTAGAGACATACCCATGTTCTCAAGAAAGAGCACATCTTGACCACTTAGAAAGCGTCTTTGCAGCTTTGCCTCCCAGTTTCACGTCTATGCTGTCAAACTGTTCAGATGTCAAACAAGGTCTGATATGACAAATTTAGAATGAAAATTCTTTCAAATTATCGTAGTGACAAATTTCCTTTCTTA

mRNA sequence

ATGGCGGGATTCCAAGGTGTGGTGCGGAGCGAAGAGGAAGCGGAAATGCCCGCTGCTGCCATTAGAGACCAGTGGGAAGTTCAATTCTCTCGCTTCATTTGCTATCCAAGTAGCGCCGCCACCACCACCAACAACGCCAGCCTCCATCCTCTCTTTCCCCGTCTCCGGAATCGCCCGCCTCGAGGCACATGGATCTCTTCGTCTTCCACTGCTATTCTGCAACTCCTCCACCGTTGCTCCTCCCCTGATTTGATTCTCACCGTGCGTTTTCGAGATAAGATCCTTGAAGAGCACTACCTCTCCAAGCTTCATTTCTCATGGCCTCAGGTGTCCTGTATCTCTGGTTTTCCTGCCAGAGGCACCAGAACTATTTTTGGAAGTTATAGAGATTCAGCTAACGAGGTAAGTCATTATATAATGAAGATTTTGTCAATTTCTGTGATCCAAAAGTTTGCCCTAAGATTTTCAACAGCTTACGAAACTGATTCATTTGTGAACATTCTCAAGGAAATGGCGGAGGATGCAAGAGATATTCAACCAATAAGCAGCGAATTTGGGTCTCAGATTACAACACAATCCGAGTTATTATCTTCAAACAGACCGTCTGATAGCCTTTGTGAAGAATTGACCAATTCTATTGTCCAGCCTTACACTCCTGAAATGCCTTTGAGCTTAAAAGATACTGTAGAGACATACCCATGTTCTCAAGAAAGAGCACATCTTGACCACTTAGAAAGCGTCTTTGCAGCTTTGCCTCCCAGTTTCACGTCTATGCTGTCAAACTGTTCAGATGTCAAACAAGGTCTGTATGACAAATTTAGAATGAAAATTCTTTCAAATTATCGTAGTGACAAATTTCCTTTCTTA

Coding sequence (CDS)

ATGGCGGGATTCCAAGGTGTGGTGCGGAGCGAAGAGGAAGCGGAAATGCCCGCTGCTGCCATTAGAGACCAGTGGGAAGTTCAATTCTCTCGCTTCATTTGCTATCCAAGTAGCGCCGCCACCACCACCAACAACGCCAGCCTCCATCCTCTCTTTCCCCGTCTCCGGAATCGCCCGCCTCGAGGCACATGGATCTCTTCGTCTTCCACTGCTATTCTGCAACTCCTCCACCGTTGCTCCTCCCCTGATTTGATTCTCACCGTGCGTTTTCGAGATAAGATCCTTGAAGAGCACTACCTCTCCAAGCTTCATTTCTCATGGCCTCAGGTGTCCTGTATCTCTGGTTTTCCTGCCAGAGGCACCAGAACTATTTTTGGAAGTTATAGAGATTCAGCTAACGAGGTAAGTCATTATATAATGAAGATTTTGTCAATTTCTGTGATCCAAAAGTTTGCCCTAAGATTTTCAACAGCTTACGAAACTGATTCATTTGTGAACATTCTCAAGGAAATGGCGGAGGATGCAAGAGATATTCAACCAATAAGCAGCGAATTTGGGTCTCAGATTACAACACAATCCGAGTTATTATCTTCAAACAGACCGTCTGATAGCCTTTGTGAAGAATTGACCAATTCTATTGTCCAGCCTTACACTCCTGAAATGCCTTTGAGCTTAAAAGATACTGTAGAGACATACCCATGTTCTCAAGAAAGAGCACATCTTGACCACTTAGAAAGCGTCTTTGCAGCTTTGCCTCCCAGTTTCACGTCTATGCTGTCAAACTGTTCAGATGTCAAACAAGGTCTGTATGACAAATTTAGAATGAAAATTCTTTCAAATTATCGTAGTGACAAATTTCCTTTCTTA

Protein sequence

MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPPRGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARGTRTIFGSYRDSANEVSHYIMKILSISVIQKFALRFSTAYETDSFVNILKEMAEDARDIQPISSEFGSQITTQSELLSSNRPSDSLCEELTNSIVQPYTPEMPLSLKDTVETYPCSQERAHLDHLESVFAALPPSFTSMLSNCSDVKQGLYDKFRMKILSNYRSDKFPFL
Homology
BLAST of MS000913 vs. NCBI nr
Match: XP_022131407.1 (protein POOR HOMOLOGOUS SYNAPSIS 1 [Momordica charantia])

HSP 1 Score: 500.7 bits (1288), Expect = 8.2e-138
Identity = 253/268 (94.40%), Postives = 255/268 (95.15%), Query Frame = 0

Query: 1   MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPP 60
           MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPP
Sbjct: 1   MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPP 60

Query: 61  RGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARG 120
           RGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARG
Sbjct: 61  RGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARG 120

Query: 121 TRTIFGSYRDSANEVSHYIMKILSISVIQKFALRFSTAYETDSFVNILKEMAEDARDIQP 180
           TRTIFGSYRDSANE             IQKFALRFSTAYETDSFVNILKEMAEDARDIQP
Sbjct: 121 TRTIFGSYRDSANE-------------IQKFALRFSTAYETDSFVNILKEMAEDARDIQP 180

Query: 181 ISSEFGSQITTQSELLSSNRPSDSLCEELTNSIVQPYTPEMPLSLKDTVETYPCSQERAH 240
           ISSEFGS+ITTQSELLSSNRPSDSLCEEL+NSIVQPYTPEMPLSLKDTVETYPCSQERAH
Sbjct: 181 ISSEFGSRITTQSELLSSNRPSDSLCEELSNSIVQPYTPEMPLSLKDTVETYPCSQERAH 240

Query: 241 LDHLESVFAALPPSFTSMLSNCSDVKQG 269
           LDHLESVFAALPPSFTSMLSNCSDVKQG
Sbjct: 241 LDHLESVFAALPPSFTSMLSNCSDVKQG 255

BLAST of MS000913 vs. NCBI nr
Match: KAG6585176.1 (Protein POOR-likeOUS SYNAPSIS 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 396.7 bits (1018), Expect = 1.7e-106
Identity = 200/276 (72.46%), Postives = 229/276 (82.97%), Query Frame = 0

Query: 1   MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAAT-------TTNNASLHPLFP 60
           MAGF+G  +S+EE EMP AAIRDQWEVQFSRF+CYPS+ +T       T  N +L PL  
Sbjct: 1   MAGFEGGEQSKEEPEMPFAAIRDQWEVQFSRFVCYPSTTSTSNDTDTDTNTNTNLRPLLL 60

Query: 61  RLRNRPPRGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCI 120
             RNRPPRGTWISSSSTA+LQLLH CS+ DLIL VRFRDKILEEHYLSKLHFSWPQ+ CI
Sbjct: 61  NARNRPPRGTWISSSSTAVLQLLHHCSASDLILAVRFRDKILEEHYLSKLHFSWPQMCCI 120

Query: 121 SGFPARGTRTIFGSYRDSANEVSHYIMKILSISVIQKFALRFSTAYETDSFVNILKEMAE 180
           SGFPARGTRTIFGSYRDSA+E SH +     +SVIQKFALRFST+ E DSFV+ILKEM++
Sbjct: 121 SGFPARGTRTIFGSYRDSADEASHDMFIRFCLSVIQKFALRFSTSCEIDSFVSILKEMSK 180

Query: 181 DARDIQPISSEFGSQITTQSELLSSNRPSDSLCEELTNS-IVQPYTPEMPLSLKDTVETY 240
           DARDIQPIS +FGSQI+++    ++NRPSDSL EEL+NS ++QPYTPEMP SLKDT E Y
Sbjct: 181 DARDIQPISWDFGSQISSELLCSNTNRPSDSLSEELSNSTVLQPYTPEMPSSLKDTAEKY 240

Query: 241 PCSQERAHLDHLESVFAALPPSFTSMLSNCSDVKQG 269
             SQE  H+DHLES+FAALPPSFTSM+SNCSDVKQG
Sbjct: 241 SSSQENVHVDHLESIFAALPPSFTSMVSNCSDVKQG 276

BLAST of MS000913 vs. NCBI nr
Match: XP_023538055.1 (protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita pepo subsp. pepo] >XP_023538056.1 protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 387.1 bits (993), Expect = 1.3e-103
Identity = 197/274 (71.90%), Postives = 225/274 (82.12%), Query Frame = 0

Query: 1   MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAAT-----TTNNASLHPLFPRL 60
           MAGF+G  +S+E+AEMP AAIRDQWEVQFSRF+CYPS+ +T     T  N +L PL    
Sbjct: 1   MAGFEGGEQSKEKAEMPFAAIRDQWEVQFSRFVCYPSTTSTSNDTDTDTNTNLRPLLLNA 60

Query: 61  RNRPPRGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCISG 120
           RNRPPRGTWISSSSTA+LQLLH CS+ DLIL VRFRDKILEEHYLSKLHFSWPQ+ CISG
Sbjct: 61  RNRPPRGTWISSSSTAVLQLLHHCSASDLILAVRFRDKILEEHYLSKLHFSWPQMCCISG 120

Query: 121 FPARGTRTIFGSYRDSANEVSHYIMKILSISVIQKFALRFSTAYETDSFVNILKEMAEDA 180
           FPARGTRTIFGSYRDSA+E             IQKFALRFST+ E DSFV+ILKEM++DA
Sbjct: 121 FPARGTRTIFGSYRDSADE-------------IQKFALRFSTSCEIDSFVSILKEMSKDA 180

Query: 181 RDIQPISSEFGSQITTQSELLSSNRPSDSLCEELTNS-IVQPYTPEMPLSLKDTVETYPC 240
           RDIQPIS +FGSQI+++    ++NRPSDSL EEL+NS ++QPYTPEMPLSLKDT E Y  
Sbjct: 181 RDIQPISCDFGSQISSELLCSNTNRPSDSLSEELSNSTVLQPYTPEMPLSLKDTAEKYSS 240

Query: 241 SQERAHLDHLESVFAALPPSFTSMLSNCSDVKQG 269
           SQE  H+DHLES+FAALPPSFTSM+SNCSDVKQG
Sbjct: 241 SQENVHVDHLESIFAALPPSFTSMVSNCSDVKQG 261

BLAST of MS000913 vs. NCBI nr
Match: KAG7020096.1 (Protein POOR-likeOUS SYNAPSIS 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 385.6 bits (989), Expect = 3.8e-103
Identity = 197/276 (71.38%), Postives = 224/276 (81.16%), Query Frame = 0

Query: 1   MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAAT-------TTNNASLHPLFP 60
           MAGF+G  +S+EE EMP AAIRDQWEVQFSRF+CYPS+ +T       T  N +L PL  
Sbjct: 1   MAGFEGGEQSKEEPEMPFAAIRDQWEVQFSRFVCYPSTTSTSNDTDTDTNTNTNLRPLLL 60

Query: 61  RLRNRPPRGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCI 120
             RNRPPRGTWISSSSTA+LQLLH CS+ DLIL VRFRDKILEEHYLSKLHFSWPQ+ CI
Sbjct: 61  NARNRPPRGTWISSSSTAVLQLLHHCSASDLILAVRFRDKILEEHYLSKLHFSWPQMCCI 120

Query: 121 SGFPARGTRTIFGSYRDSANEVSHYIMKILSISVIQKFALRFSTAYETDSFVNILKEMAE 180
           SGFPARGTRTIFGSYRDSA+E  H          IQKFALRFST+ E DSFV+ILKEM++
Sbjct: 121 SGFPARGTRTIFGSYRDSADEARHCFS-----WQIQKFALRFSTSCEIDSFVSILKEMSK 180

Query: 181 DARDIQPISSEFGSQITTQSELLSSNRPSDSLCEELTNS-IVQPYTPEMPLSLKDTVETY 240
           DARDIQPIS +FGSQI+++    ++NRPSDSL EEL+NS ++QPYTPEMP SLKDT E Y
Sbjct: 181 DARDIQPISWDFGSQISSELLCSNTNRPSDSLSEELSNSTVLQPYTPEMPSSLKDTAEKY 240

Query: 241 PCSQERAHLDHLESVFAALPPSFTSMLSNCSDVKQG 269
             SQE  H+DHLES+FAALPPSFTSM+SNCSDVKQG
Sbjct: 241 SSSQENVHVDHLESIFAALPPSFTSMVSNCSDVKQG 271

BLAST of MS000913 vs. NCBI nr
Match: XP_022951934.1 (protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita moschata])

HSP 1 Score: 380.2 bits (975), Expect = 1.6e-101
Identity = 195/280 (69.64%), Postives = 223/280 (79.64%), Query Frame = 0

Query: 1   MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAAT-----------TTNNASLH 60
           MAGF+G  +S+EE EMP AAIRDQWEVQFSRF+CYPS+ +T           T  N +L 
Sbjct: 1   MAGFEGGEQSKEEPEMPFAAIRDQWEVQFSRFVCYPSTTSTSNDTDTDTNTNTNTNTNLR 60

Query: 61  PLFPRLRNRPPRGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQ 120
           PL    R+RPPRGTWISSSSTA+LQLLH CS+ DLIL VRFRDKILEEHYLSKLHFSWPQ
Sbjct: 61  PLLLNARHRPPRGTWISSSSTAVLQLLHHCSASDLILAVRFRDKILEEHYLSKLHFSWPQ 120

Query: 121 VSCISGFPARGTRTIFGSYRDSANEVSHYIMKILSISVIQKFALRFSTAYETDSFVNILK 180
           + CISGFP RGTRTIFGSYRDSA+E             IQKFALRFST+ E DSFV+ILK
Sbjct: 121 MCCISGFPPRGTRTIFGSYRDSADE-------------IQKFALRFSTSCEIDSFVSILK 180

Query: 181 EMAEDARDIQPISSEFGSQITTQSELLSSNRPSDSLCEELTNS-IVQPYTPEMPLSLKDT 240
           EM++DARDIQPIS +FGSQI+++    ++NRPSDSL EEL+NS ++QPYTPEMPLSLKDT
Sbjct: 181 EMSKDARDIQPISCDFGSQISSELLCSNTNRPSDSLSEELSNSTVLQPYTPEMPLSLKDT 240

Query: 241 VETYPCSQERAHLDHLESVFAALPPSFTSMLSNCSDVKQG 269
            E Y  SQE  H+DHLES+FAALPPSFTSM+SNCSDVKQG
Sbjct: 241 AEKYSPSQENVHVDHLESIFAALPPSFTSMVSNCSDVKQG 267

BLAST of MS000913 vs. ExPASy Swiss-Prot
Match: Q45GQ7 (Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arabidopsis thaliana OX=3702 GN=PHS1 PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.5e-30
Identity = 81/205 (39.51%), Postives = 117/205 (57.07%), Query Frame = 0

Query: 24  QWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPPRGTWIS-SSSTAILQLLHRCSSP 83
           +W + F+RF+ YPSS +    +  L PL  R +   P GTW+S SSST  L ++   +  
Sbjct: 22  RWTIGFARFVHYPSSPSP---HPVLKPLGKREQYHSPHGTWLSASSSTVSLHIVDELNRS 81

Query: 84  DLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARGTRTIFGSYRDSANEVSHYIMKI 143
           D+IL+V+   K+LEEHY+SKL+F+WPQ+SC+SGFP+RG+R IF +Y DSAN+        
Sbjct: 82  DVILSVKLGQKVLEEHYISKLNFTWPQMSCVSGFPSRGSRAIFVTYMDSANQ-------- 141

Query: 144 LSISVIQKFALRFSTAYETDSFVNILKEMAEDARDIQPISSEFGSQITTQSELLSSNRPS 203
                IQKFALRFST      FV  LKE  +  ++    + +  ++        S   PS
Sbjct: 142 -----IQKFALRFSTCDAALEFVEALKEKIKGLKEASTQNQK--NKTRCDVSFQSDYNPS 201

Query: 204 DSLCEELTN---SIVQP---YTPEM 222
           D++    T    ++V+P   Y PEM
Sbjct: 202 DAIIPRATQKEPNMVRPLNSYVPEM 208

BLAST of MS000913 vs. ExPASy Swiss-Prot
Match: Q6W2J0 (Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Zea mays OX=4577 GN=PHS1 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.7e-19
Identity = 70/245 (28.57%), Postives = 114/245 (46.53%), Query Frame = 0

Query: 24  QWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPPRGTWISSSSTAILQLLH-RCSSP 83
           +WEV+++R+   P    T    + L  +   +     +GTWI +S  A L + H    S 
Sbjct: 32  KWEVEYARYFGTPRRDPTAAPPSGLRYIMRGVHRH--QGTWIPASCPASLCVCHPSLPSA 91

Query: 84  DLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARGTRTIFGSYRDSANEVSHYIMKI 143
             +LT+   D + EEH++S L+FSWPQV+C++  P RG+R +F S+ D   +        
Sbjct: 92  VPVLTISIGDVVFEEHFVSILNFSWPQVTCVTQCPIRGSRVVFVSFCDKFKQ-------- 151

Query: 144 LSISVIQKFALRFSTAYETDSFVNILKEM--AEDARDIQPISSEFGSQITTQSELLSSNR 203
                IQKFA+RF    + +SF++ ++    +    DI P  S++  + ++ SE + SN 
Sbjct: 152 -----IQKFAVRFPQPCDAESFLSCVECSCGSSGTMDIIPFGSDYVCEDSSASEYIVSNG 211

Query: 204 PSDSL--CEELTNSIVQPYTPEMPLSLKDTVETYPCSQERAHLDHLESVFAALPPSFTSM 263
               L     L          E P++  +  + +      A      S F   PPSF  M
Sbjct: 212 LHHRLDDASNLEEQCFDHTIDEPPMNYHEETDQHVLEPLSASNTSNNSAF---PPSFNQM 258

BLAST of MS000913 vs. ExPASy TrEMBL
Match: A0A6J1BQX6 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Momordica charantia OX=3673 GN=LOC111004631 PE=4 SV=1)

HSP 1 Score: 500.7 bits (1288), Expect = 4.0e-138
Identity = 253/268 (94.40%), Postives = 255/268 (95.15%), Query Frame = 0

Query: 1   MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPP 60
           MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPP
Sbjct: 1   MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPP 60

Query: 61  RGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARG 120
           RGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARG
Sbjct: 61  RGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARG 120

Query: 121 TRTIFGSYRDSANEVSHYIMKILSISVIQKFALRFSTAYETDSFVNILKEMAEDARDIQP 180
           TRTIFGSYRDSANE             IQKFALRFSTAYETDSFVNILKEMAEDARDIQP
Sbjct: 121 TRTIFGSYRDSANE-------------IQKFALRFSTAYETDSFVNILKEMAEDARDIQP 180

Query: 181 ISSEFGSQITTQSELLSSNRPSDSLCEELTNSIVQPYTPEMPLSLKDTVETYPCSQERAH 240
           ISSEFGS+ITTQSELLSSNRPSDSLCEEL+NSIVQPYTPEMPLSLKDTVETYPCSQERAH
Sbjct: 181 ISSEFGSRITTQSELLSSNRPSDSLCEELSNSIVQPYTPEMPLSLKDTVETYPCSQERAH 240

Query: 241 LDHLESVFAALPPSFTSMLSNCSDVKQG 269
           LDHLESVFAALPPSFTSMLSNCSDVKQG
Sbjct: 241 LDHLESVFAALPPSFTSMLSNCSDVKQG 255

BLAST of MS000913 vs. ExPASy TrEMBL
Match: A0A6J1GK72 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita moschata OX=3662 GN=LOC111454670 PE=4 SV=1)

HSP 1 Score: 380.2 bits (975), Expect = 7.8e-102
Identity = 195/280 (69.64%), Postives = 223/280 (79.64%), Query Frame = 0

Query: 1   MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAAT-----------TTNNASLH 60
           MAGF+G  +S+EE EMP AAIRDQWEVQFSRF+CYPS+ +T           T  N +L 
Sbjct: 1   MAGFEGGEQSKEEPEMPFAAIRDQWEVQFSRFVCYPSTTSTSNDTDTDTNTNTNTNTNLR 60

Query: 61  PLFPRLRNRPPRGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQ 120
           PL    R+RPPRGTWISSSSTA+LQLLH CS+ DLIL VRFRDKILEEHYLSKLHFSWPQ
Sbjct: 61  PLLLNARHRPPRGTWISSSSTAVLQLLHHCSASDLILAVRFRDKILEEHYLSKLHFSWPQ 120

Query: 121 VSCISGFPARGTRTIFGSYRDSANEVSHYIMKILSISVIQKFALRFSTAYETDSFVNILK 180
           + CISGFP RGTRTIFGSYRDSA+E             IQKFALRFST+ E DSFV+ILK
Sbjct: 121 MCCISGFPPRGTRTIFGSYRDSADE-------------IQKFALRFSTSCEIDSFVSILK 180

Query: 181 EMAEDARDIQPISSEFGSQITTQSELLSSNRPSDSLCEELTNS-IVQPYTPEMPLSLKDT 240
           EM++DARDIQPIS +FGSQI+++    ++NRPSDSL EEL+NS ++QPYTPEMPLSLKDT
Sbjct: 181 EMSKDARDIQPISCDFGSQISSELLCSNTNRPSDSLSEELSNSTVLQPYTPEMPLSLKDT 240

Query: 241 VETYPCSQERAHLDHLESVFAALPPSFTSMLSNCSDVKQG 269
            E Y  SQE  H+DHLES+FAALPPSFTSM+SNCSDVKQG
Sbjct: 241 AEKYSPSQENVHVDHLESIFAALPPSFTSMVSNCSDVKQG 267

BLAST of MS000913 vs. ExPASy TrEMBL
Match: A0A6J1KPK1 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita maxima OX=3661 GN=LOC111496445 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 6.6e-101
Identity = 193/273 (70.70%), Postives = 224/273 (82.05%), Query Frame = 0

Query: 1   MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAAT---TTNNASLHPLFPRLRN 60
           MAGF+G  +S+EEAEMP AAIRDQWEVQFSRF+CYP++ +T   T  + +L PL    R+
Sbjct: 1   MAGFEGGEQSKEEAEMPFAAIRDQWEVQFSRFVCYPTTTSTSNDTDTDTNLRPLLLNARS 60

Query: 61  -RPPRGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCISGF 120
            RPPRGTWISSSSTA+LQLLH CS+ D IL VRFRDKILEEHYLSKLHFSWPQ+ CISGF
Sbjct: 61  RRPPRGTWISSSSTAVLQLLHHCSASDFILAVRFRDKILEEHYLSKLHFSWPQMCCISGF 120

Query: 121 PARGTRTIFGSYRDSANEVSHYIMKILSISVIQKFALRFSTAYETDSFVNILKEMAEDAR 180
           PARGTRT+FGSYRDSA+E             IQKFALRFST+ E DSFV+ILKEM++DAR
Sbjct: 121 PARGTRTMFGSYRDSADE-------------IQKFALRFSTSCEIDSFVSILKEMSKDAR 180

Query: 181 DIQPISSEFGSQITTQSELLSSNRPSDSLCEELTNS-IVQPYTPEMPLSLKDTVETYPCS 240
           DIQPIS +FGSQI+++    ++NRPSDSL EEL+NS ++QPYTPEMPLSLKDT E Y  S
Sbjct: 181 DIQPISCDFGSQISSELLCSNTNRPSDSLSEELSNSTVLQPYTPEMPLSLKDTAEKYSSS 240

Query: 241 QERAHLDHLESVFAALPPSFTSMLSNCSDVKQG 269
           QE  H+DHLES+FAALPPSFTSM+SNCSDVKQG
Sbjct: 241 QENVHVDHLESIFAALPPSFTSMVSNCSDVKQG 260

BLAST of MS000913 vs. ExPASy TrEMBL
Match: A0A6P5U3P8 (protein POOR HOMOLOGOUS SYNAPSIS 1-like OS=Prunus avium OX=42229 GN=LOC110773590 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 127/249 (51.00%), Postives = 167/249 (67.07%), Query Frame = 0

Query: 19  AAIRDQWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPPRGTWISSSSTAILQLLHR 78
           +A+R+QWEV F+ F  YP    TT+    L PL P+ R R P   WISSSS A LQL+  
Sbjct: 46  SAVREQWEVHFALFFPYP-PPPTTSTCPDLVPLDPKYRRRRPLDRWISSSSLARLQLVRD 105

Query: 79  CSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARGTRTIFGSYRDSANEVSHY 138
            S+ D++LTV F DKILEEHY+SKLHF WPQVSC+SGFPARGTR IF SYRD ++E    
Sbjct: 106 HSNSDVVLTVGFADKILEEHYVSKLHFIWPQVSCMSGFPARGTRAIFVSYRDCSDE---- 165

Query: 139 IMKILSISVIQKFALRFSTAYETDSFVNILKEMAEDARDIQPISSEFGSQITTQSELLSS 198
                    IQKF  RF + +E + F+N LK + ++  D +P++++ GS+I++QSEL SS
Sbjct: 166 ---------IQKFGFRFLSLHEAEKFMNALKGICKEGMDTEPVNTDVGSEISSQSELTSS 225

Query: 199 NRPSDSLCEELTN-SIVQPYTPEM-PLSLKDTVETYPCSQERAHLDHLESVFAALPPSFT 258
           NRP +  C++LT  + VQ YTP++ P  L +  E Y C+QE   +D+ +S FAALPPSFT
Sbjct: 226 NRPLNLACKDLTTMTPVQTYTPKISPRLLNNEAEQYSCTQEFTPIDNFQSNFAALPPSFT 280

Query: 259 SMLSNCSDV 266
           S LSNC  V
Sbjct: 286 SFLSNCGPV 280

BLAST of MS000913 vs. ExPASy TrEMBL
Match: A0A2I4DDJ4 (protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Juglans regia OX=51240 GN=LOC108979080 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 1.1e-58
Identity = 132/271 (48.71%), Postives = 179/271 (66.05%), Query Frame = 0

Query: 1   MAGFQGVVRSEEEAEMPAAAIRDQWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPP 60
           MAG   +VR E+  ++  AA+ DQWE+QF+RF  YP  +++  + +   PL  ++R R P
Sbjct: 1   MAGSLAIVRIEDAQDL-VAAVSDQWEIQFARFFGYPPLSSSCPDRS---PLLSKVRKRRP 60

Query: 61  RGTWISSSSTAILQLLHRCSSPDLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARG 120
            GTWISSSS+A L+L++  S+ D+ILTV  R KILE+HY+SKLHFSWP VSC+SGFPARG
Sbjct: 61  HGTWISSSSSAFLRLVNDHSNSDVILTVSLRGKILEQHYVSKLHFSWPHVSCVSGFPARG 120

Query: 121 TRTIFGSYRDSANEVSHYIMKILSISVIQKFALRFSTAYETDSFVNILKEMAEDARDIQP 180
           TR++F SY D                 IQKFALRFST  ET+ F+N LKE+  D  DI P
Sbjct: 121 TRSVFVSYGDQE---------------IQKFALRFSTTCETEIFINALKEILNDVGDIAP 180

Query: 181 ISSEFGSQITTQSELLSSNRPSDSLCEELT-NSIVQPYTPEMPLSLKDTVETYPCSQER- 240
           ++++ GS+I +Q+EL+SSNR S+  CEEL+     Q YTP+M  S  + +E +  + E+ 
Sbjct: 181 LNNDLGSEILSQTELVSSNRHSNRACEELSFMPPEQTYTPQMSPSSNNEIEQHSSNHEKD 240

Query: 241 -AHLDHLESVFAALPPSFTSMLSN-CSDVKQ 268
            A     E   AALPPSFTS+L+N CS+V Q
Sbjct: 241 TAFRHDFEETVAALPPSFTSLLTNCCSEVNQ 252

BLAST of MS000913 vs. TAIR 10
Match: AT1G10710.1 (poor homologous synapsis 1 )

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-31
Identity = 81/205 (39.51%), Postives = 117/205 (57.07%), Query Frame = 0

Query: 24  QWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPPRGTWIS-SSSTAILQLLHRCSSP 83
           +W + F+RF+ YPSS +    +  L PL  R +   P GTW+S SSST  L ++   +  
Sbjct: 22  RWTIGFARFVHYPSSPSP---HPVLKPLGKREQYHSPHGTWLSASSSTVSLHIVDELNRS 81

Query: 84  DLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARGTRTIFGSYRDSANEVSHYIMKI 143
           D+IL+V+   K+LEEHY+SKL+F+WPQ+SC+SGFP+RG+R IF +Y DSAN+        
Sbjct: 82  DVILSVKLGQKVLEEHYISKLNFTWPQMSCVSGFPSRGSRAIFVTYMDSANQ-------- 141

Query: 144 LSISVIQKFALRFSTAYETDSFVNILKEMAEDARDIQPISSEFGSQITTQSELLSSNRPS 203
                IQKFALRFST      FV  LKE  +  ++    + +  ++        S   PS
Sbjct: 142 -----IQKFALRFSTCDAALEFVEALKEKIKGLKEASTQNQK--NKTRCDVSFQSDYNPS 201

Query: 204 DSLCEELTN---SIVQP---YTPEM 222
           D++    T    ++V+P   Y PEM
Sbjct: 202 DAIIPRATQKEPNMVRPLNSYVPEM 208

BLAST of MS000913 vs. TAIR 10
Match: AT1G10710.2 (poor homologous synapsis 1 )

HSP 1 Score: 133.3 bits (334), Expect = 3.2e-31
Identity = 81/205 (39.51%), Postives = 117/205 (57.07%), Query Frame = 0

Query: 24  QWEVQFSRFICYPSSAATTTNNASLHPLFPRLRNRPPRGTWIS-SSSTAILQLLHRCSSP 83
           +W + F+RF+ YPSS +    +  L PL  R +   P GTW+S SSST  L ++   +  
Sbjct: 22  RWTIGFARFVHYPSSPSP---HPVLKPLGKREQYHSPHGTWLSASSSTVSLHIVDELNRS 81

Query: 84  DLILTVRFRDKILEEHYLSKLHFSWPQVSCISGFPARGTRTIFGSYRDSANEVSHYIMKI 143
           D+IL+V+   K+LEEHY+SKL+F+WPQ+SC+SGFP+RG+R IF +Y DSAN+        
Sbjct: 82  DVILSVKLGQKVLEEHYISKLNFTWPQMSCVSGFPSRGSRAIFVTYMDSANQ-------- 141

Query: 144 LSISVIQKFALRFSTAYETDSFVNILKEMAEDARDIQPISSEFGSQITTQSELLSSNRPS 203
                IQKFALRFST      FV  LKE  +  ++    + +  ++        S   PS
Sbjct: 142 -----IQKFALRFSTCDAALEFVEALKEKIKGLKEASTQNQK--NKTRCDVSFQSDYNPS 201

Query: 204 DSLCEELTN---SIVQP---YTPEM 222
           D++    T    ++V+P   Y PEM
Sbjct: 202 DAIIPRATQKEPNMVRPLNSYVPEM 208

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022131407.18.2e-13894.40protein POOR HOMOLOGOUS SYNAPSIS 1 [Momordica charantia][more]
KAG6585176.11.7e-10672.46Protein POOR-likeOUS SYNAPSIS 1, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023538055.11.3e-10371.90protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita pepo subsp. pepo] >XP_023538056.1 ... [more]
KAG7020096.13.8e-10371.38Protein POOR-likeOUS SYNAPSIS 1, partial [Cucurbita argyrosperma subsp. argyrosp... [more]
XP_022951934.11.6e-10169.64protein POOR HOMOLOGOUS SYNAPSIS 1 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Q45GQ74.5e-3039.51Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arabidopsis thaliana OX=3702 GN=PHS1 PE=1 ... [more]
Q6W2J04.7e-1928.57Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Zea mays OX=4577 GN=PHS1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1BQX64.0e-13894.40protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Momordica charantia OX=3673 GN=LOC11100463... [more]
A0A6J1GK727.8e-10269.64protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita moschata OX=3662 GN=LOC111454670... [more]
A0A6J1KPK16.6e-10170.70protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Cucurbita maxima OX=3661 GN=LOC111496445 P... [more]
A0A6P5U3P81.1e-5851.00protein POOR HOMOLOGOUS SYNAPSIS 1-like OS=Prunus avium OX=42229 GN=LOC110773590... [more]
A0A2I4DDJ41.1e-5848.71protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Juglans regia OX=51240 GN=LOC108979080 PE=... [more]
Match NameE-valueIdentityDescription
AT1G10710.13.2e-3139.51poor homologous synapsis 1 [more]
AT1G10710.23.2e-3139.51poor homologous synapsis 1 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MS000913.1MS000913.1mRNA