MS000902 (gene) Bitter gourd (TR) v1

Overview


Name	MS000902
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Plant protein 1589 of Uncharacterized protein function
Location	scaffold36: 165445 .. 165881 (+)
RNA-Seq Expression	MS000902
Synteny	MS000902

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACTCTTACAGCCACGGTCAGTTTCTCCCTTGTTTTCATTGCCACCCCCATGCCTATATCCGGATGGTACCTTCTTCCCTCTCTCTTGCATGCACTCAGTTCGTAATTTTATTTACTATTACATTAGGGACAAATATATATATCGTCTTTAATTTGCACTTGCAGGTCCAACATCTTATAGAGAGATGCTTGCTACTTCATATGAGCCCGGATGAGTGCGCAAAGGCATTGGCTCACCATGCAAATATTCGCCCTCTCATAACACTTACAGGTCCAAACTCTCTCTCATGTACGTTGTGTATTTCCAAATTCCAAATTACTCTCTCACCCTCCAATCTAAATGCTCTCTTTTTGCAGTGTGGAGAGAGCTCCAAAAAGAAAACACTGAATTCTTCCGCTCATATTTCCATGCTATTTCTCCCAAACCATTACTG

mRNA sequence

ATGTACTCTTACAGCCACGGTCAGTTTCTCCCTTGTTTTCATTGCCACCCCCATGCCTATATCCGGATGGTCCAACATCTTATAGAGAGATGCTTGCTACTTCATATGAGCCCGGATGAGTGCGCAAAGGCATTGGCTCACCATGCAAATATTCGCCCTCTCATAACACTTACAGTGTGGAGAGAGCTCCAAAAAGAAAACACTGAATTCTTCCGCTCATATTTCCATGCTATTTCTCCCAAACCATTACTG

Coding sequence (CDS)

ATGTACTCTTACAGCCACGGTCAGTTTCTCCCTTGTTTTCATTGCCACCCCCATGCCTATATCCGGATGGTCCAACATCTTATAGAGAGATGCTTGCTACTTCATATGAGCCCGGATGAGTGCGCAAAGGCATTGGCTCACCATGCAAATATTCGCCCTCTCATAACACTTACAGTGTGGAGAGAGCTCCAAAAAGAAAACACTGAATTCTTCCGCTCATATTTCCATGCTATTTCTCCCAAACCATTACTG

Protein sequence

MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVWRELQKENTEFFRSYFHAISPKPLL

Homology

[Close]

BLAST of MS000902 vs. NCBI nr
Match: XP_022132210.1 (uncharacterized protein LOC111005125 [Momordica charantia])

HSP 1 Score: 185.3 bits (469), Expect = 2.2e-43
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW 60
          MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW
Sbjct: 1  MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW 60

Query: 61 RELQKENTEFFRSYFHAISPKPLL 85
          RELQKENTEFFRSYFHAISPKPLL
Sbjct: 61 RELQKENTEFFRSYFHAISPKPLL 84

[Close]

BLAST of MS000902 vs. NCBI nr
Match: XP_008444348.1 (PREDICTED: uncharacterized protein LOC103487701 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 2.1e-33
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 1  MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW 60
          MY  +   FLPCFHC PHAYIRMVQHLIERCLLLHMS DEC KALAHHANIRPLITLTVW
Sbjct: 1  MYRPNRHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITLTVW 60

Query: 61 RELQKENTEFFRSYFHAISPKPLL 85
          +ELQKEN++FFR+YFH ISP P L
Sbjct: 61 KELQKENSDFFRAYFHTISPNPFL 84

[Close]

BLAST of MS000902 vs. NCBI nr
Match: XP_038884418.1 (uncharacterized protein LOC120075271 isoform X1 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 3.5e-33
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 4  YSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVWREL 63
          ++H   +PCFHCHPHAYIRMVQHLIERCLLLHMS DEC KALAHHANIRPLITLTVW+EL
Sbjct: 6  HNHHFDVPCFHCHPHAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITLTVWKEL 65

Query: 64 QKENTEFFRSYFHAISPKPLL 85
          QKEN+EFFR+YFH ISP P L
Sbjct: 66 QKENSEFFRAYFHTISPNPFL 86

[Close]

BLAST of MS000902 vs. NCBI nr
Match: XP_038884419.1 (uncharacterized protein LOC120075271 isoform X2 [Benincasa hispida])

HSP 1 Score: 151.4 bits (381), Expect = 3.5e-33
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 0


Query: 4  YSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVWREL 63
          ++H   +PCFHCHPHAYIRMVQHLIERCLLLHMS DEC KALAHHANIRPLITLTVW+EL
Sbjct: 6  HNHHFDVPCFHCHPHAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITLTVWKEL 65

Query: 64 QKENTEFFRSYFHAISPKPLL 85
          QKEN+EFFR+YFH ISP P L
Sbjct: 66 QKENSEFFRAYFHTISPNPFL 86

[Close]

BLAST of MS000902 vs. NCBI nr
Match: XP_022997625.1 (uncharacterized protein LOC111492501 isoform X1 [Cucurbita maxima])

HSP 1 Score: 148.7 bits (374), Expect = 2.3e-32
Identity = 70/84 (83.33%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1  MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW 60
          MY YSH QFLPCFHCHP AYIRMVQHLIERCLLLHMS DEC KALAHHANIRPLIT TVW
Sbjct: 1  MYPYSH-QFLPCFHCHPQAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITHTVW 60

Query: 61 RELQKENTEFFRSYFHAISPKPLL 85
          +ELQKEN EFFR+YF  IS  P L
Sbjct: 61 KELQKENPEFFRAYFRTISRHPFL 83

[Close]

BLAST of MS000902 vs. ExPASy TrEMBL
Match: A0A6J1BRT4 (uncharacterized protein LOC111005125 OS=Momordica charantia OX=3673 GN=LOC111005125 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-43
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0


Query: 1  MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW 60
          MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW
Sbjct: 1  MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW 60

Query: 61 RELQKENTEFFRSYFHAISPKPLL 85
          RELQKENTEFFRSYFHAISPKPLL
Sbjct: 61 RELQKENTEFFRSYFHAISPKPLL 84

[Close]

BLAST of MS000902 vs. ExPASy TrEMBL
Match: A0A1S3BA39 (uncharacterized protein LOC103487701 OS=Cucumis melo OX=3656 GN=LOC103487701 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33
Identity = 68/84 (80.95%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 1  MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW 60
          MY  +   FLPCFHC PHAYIRMVQHLIERCLLLHMS DEC KALAHHANIRPLITLTVW
Sbjct: 1  MYRPNRHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITLTVW 60

Query: 61 RELQKENTEFFRSYFHAISPKPLL 85
          +ELQKEN++FFR+YFH ISP P L
Sbjct: 61 KELQKENSDFFRAYFHTISPNPFL 84

[Close]

BLAST of MS000902 vs. ExPASy TrEMBL
Match: A0A6J1KA89 (uncharacterized protein LOC111492501 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111492501 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 70/84 (83.33%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1  MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW 60
          MY YSH QFLPCFHCHP AYIRMVQHLIERCLLLHMS DEC KALAHHANIRPLIT TVW
Sbjct: 1  MYPYSH-QFLPCFHCHPQAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITHTVW 60

Query: 61 RELQKENTEFFRSYFHAISPKPLL 85
          +ELQKEN EFFR+YF  IS  P L
Sbjct: 61 KELQKENPEFFRAYFRTISRHPFL 83

[Close]

BLAST of MS000902 vs. ExPASy TrEMBL
Match: A0A6J1K802 (uncharacterized protein LOC111492501 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111492501 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 70/84 (83.33%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1  MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW 60
          MY YSH QFLPCFHCHP AYIRMVQHLIERCLLLHMS DEC KALAHHANIRPLIT TVW
Sbjct: 1  MYPYSH-QFLPCFHCHPQAYIRMVQHLIERCLLLHMSRDECVKALAHHANIRPLITHTVW 60

Query: 61 RELQKENTEFFRSYFHAISPKPLL 85
          +ELQKEN EFFR+YF  IS  P L
Sbjct: 61 KELQKENPEFFRAYFRTISRHPFL 83

[Close]

BLAST of MS000902 vs. ExPASy TrEMBL
Match: A0A0A0LMP2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348860 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 67/84 (79.76%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 1  MYSYSHGQFLPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVW 60
          MY  +   FLPCFHC PHAYIRMVQHLIERCLLLHMS DEC KALA HANIRPLITLTVW
Sbjct: 1  MYRPNSHHFLPCFHCQPHAYIRMVQHLIERCLLLHMSRDECVKALADHANIRPLITLTVW 60

Query: 61 RELQKENTEFFRSYFHAISPKPLL 85
          +ELQKEN++FFR+YFH ISP P L
Sbjct: 61 KELQKENSDFFRAYFHTISPNPFL 84

[Close]

BLAST of MS000902 vs. TAIR 10
Match: AT1G10657.2 (Plant protein 1589 of unknown function )

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-28
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 10 LPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVWRELQKENTE 69
          LPC HC PH+YIRMVQH+IERC+LL M+ DEC KAL HHA+I PL+TLTVWR LQ+EN +
Sbjct: 13 LPCLHCQPHSYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKD 72

Query: 70 FFRSYFHAISPKPLL 85
          FF +Y H +SP+P L
Sbjct: 73 FFETYGHFVSPRPFL 87

[Close]

BLAST of MS000902 vs. TAIR 10
Match: AT1G10657.3 (Plant protein 1589 of unknown function )

HSP 1 Score: 121.7 bits (304), Expect = 2.8e-28
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 0


Query: 10 LPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVWRELQKENTE 69
          LPC HC PH+YIRMVQH+IERC+LL M+ DEC KAL HHA+I PL+TLTVWR LQ+EN +
Sbjct: 13 LPCLHCQPHSYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKD 72

Query: 70 FFRSYFHAISPKPLL 85
          FF +Y H +SP+P L
Sbjct: 73 FFETYGHFVSPRPFL 87

[Close]

BLAST of MS000902 vs. TAIR 10
Match: AT1G10657.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 108.2 bits (269), Expect = 3.2e-24
Identity = 51/99 (51.52%), Postives = 62/99 (62.63%), Query Frame = 0


Query: 10  LPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLT----------- 69
           LPC HC PH+YIRMVQH+IERC+LL M+ DEC KAL HHA+I PL+TLT           
Sbjct: 13  LPCLHCQPHSYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVFSYILGFASV 72

Query: 70  -------------VWRELQKENTEFFRSYFHAISPKPLL 85
                        VWR LQ+EN +FF +Y H +SP+P L
Sbjct: 73  LQKKLHDIFPPPAVWRGLQRENKDFFETYGHFVSPRPFL 111

[Close]

BLAST of MS000902 vs. TAIR 10
Match: AT1G10657.4 (Plant protein 1589 of unknown function )

HSP 1 Score: 107.1 bits (266), Expect = 7.1e-24
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 10 LPCFHCHPHAYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVWRELQKENTE 69
          LPC HC PH+YIRMVQH+IERC+LL M+ DEC KAL HHA+I PL+TLTVWR LQ+EN +
Sbjct: 13 LPCLHCQPHSYIRMVQHMIERCILLRMTRDECVKALDHHASILPLVTLTVWRGLQRENKD 72

Query: 70 FFRS 74
          FF +
Sbjct: 73 FFET 76

[Close]

BLAST of MS000902 vs. TAIR 10
Match: AT3G55240.1 (Plant protein 1589 of unknown function )

HSP 1 Score: 88.2 bits (217), Expect = 3.4e-18
Identity = 36/56 (64.29%), Postives = 48/56 (85.71%), Query Frame = 0


Query: 19 AYIRMVQHLIERCLLLHMSPDECAKALAHHANIRPLITLTVWRELQKENTEFFRSY 75
          +YI MVQH+IE+CL+ HMS +EC +AL+ HANI P+IT TVW+EL+KEN EFF++Y
Sbjct: 8  SYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFFKAY 63

The following BLAST results are available for this feature:

BLAST of MS000902 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132210.1	2.2e-43	100.00	uncharacterized protein LOC111005125 [Momordica charantia]	[more]
XP_008444348.1	2.1e-33	80.95	PREDICTED: uncharacterized protein LOC103487701 [Cucumis melo]	[more]
XP_038884418.1	3.5e-33	82.72	uncharacterized protein LOC120075271 isoform X1 [Benincasa hispida]	[more]
XP_038884419.1	3.5e-33	82.72	uncharacterized protein LOC120075271 isoform X2 [Benincasa hispida]	[more]
XP_022997625.1	2.3e-32	83.33	uncharacterized protein LOC111492501 isoform X1 [Cucurbita maxima]	[more]

BLAST of MS000902 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000902 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRT4	1.1e-43	100.00	uncharacterized protein LOC111005125 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A1S3BA39	1.0e-33	80.95	uncharacterized protein LOC103487701 OS=Cucumis melo OX=3656 GN=LOC103487701 PE=...	[more]
A0A6J1KA89	1.1e-32	83.33	uncharacterized protein LOC111492501 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1K802	1.1e-32	83.33	uncharacterized protein LOC111492501 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A0A0LMP2	1.5e-32	79.76	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G348860 PE=4 SV=1	[more]

BLAST of MS000902 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G10657.2	2.8e-28	68.00	Plant protein 1589 of unknown function	[more]
AT1G10657.3	2.8e-28	68.00	Plant protein 1589 of unknown function	[more]
AT1G10657.1	3.2e-24	51.52	Plant protein 1589 of unknown function	[more]
AT1G10657.4	7.1e-24	70.31	Plant protein 1589 of unknown function	[more]
AT3G55240.1	3.4e-18	64.29	Plant protein 1589 of unknown function	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006476	Conserved hypothetical protein CHP01589, plant	PFAM	PF09713	A_thal_3526	coord: 24..74 e-value: 2.3E-24 score: 85.4
IPR006476	Conserved hypothetical protein CHP01589, plant	TIGRFAM	TIGR01589	TIGR01589	coord: 21..74 e-value: 6.1E-22 score: 75.4
IPR006476	Conserved hypothetical protein CHP01589, plant	PANTHER	PTHR31871	OS02G0137100 PROTEIN	coord: 2..82
None	No IPR available	PANTHER	PTHR31871:SF25	SUBFAMILY NOT NAMED	coord: 2..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000902.1	MS000902.1	mRNA