MS000892 (gene) Bitter gourd (TR) v1

Overview


Name	MS000892
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Thioredoxin-like protein
Location	scaffold36: 97869 .. 98893 (+)
RNA-Seq Expression	MS000892
Synteny	MS000892

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCTGTTATAGGTATTATACTGGTTACCCGAAAGATCTTGGGCCTTCTAGAGTCATACATTTTACATCTGAACGTGAGTTTGTCCAGCTCCTTCATGAAGGTTATCCAGTGGTTGTTGCTTTTACTGTCAGGTATGTGAATATTGTGTGTATTACCAATAATCTTTCTTTTGCTCTCTAGGTTCAACTGATCACGTTTAATTCTATAGAGGTAACTACACAAAGCATCTTGACAAAGTATTGGAGGAAGCGGCAGTTGAGTTTTATCCAAATGTGAAATTTATGCGTGTAAGTCATGATTTATTGACGTTTTCCTTTCCTCATCTTCAACAATTCCTCTCTTCCGAAGCTATAAAACTTCTATAATGTTTGTTTTTAATTTTCTTATAGTTAATCACATTTCCATTTTTCATTATTTGTTTACTTATATATTTAATTTCTGAGTTTAAAATAATACTTTCTGCACTCTATTTTGCTTGCTGACATGTCCAAGAGCAGCTTGTGTCTGGCTGTACGTCTCAAACACTGCCGCCTCCCCCGTCTCTGGTGAAATGTTTCTTTCTGTCCTTTTGGGGGGGCTGTTTGATTTATTTATTTTTTCTTTTTTTGAAAATATATCTATCCAAATACTTTCTACAATACTATTGTCTTAAAAATAGATTTTTTTTATATTTCCGAAAACATCTTCTTGAGAACCTGCAAGTGTTTCTCATTACAATATATCCACACAGGTGCCTTAGTCTTGCAGTCTTCTCTAAGAAAACATTTTCGTATTCCACAAGATGTTTCCTTGATTTCATTGAAATGATCGTGTTGCCAATTGTTTCTGTGATTCAGGGCCTTGGTCATTAGTTTAGACCAATGGGCAAAATAGTAATAAGCCACTGCATTTTTTGGGTTTACTTTCTTGTGACTTCGATCTCATGTTCAAAATTACAGGTTGAGTGCCCAAAGTATCCTGGTTTCTGCATTTCACGGCAGAGAAAAGAATATCCATTTATCGAGATGTTTCATAGTCCACAACAA

mRNA sequence

ACCTGTTATAGGTATTATACTGGTTACCCGAAAGATCTTGGGCCTTCTAGAGTCATACATTTTACATCTGAACGTGAGTTTGTCCAGCTCCTTCATGAAGGTTATCCAGTGGTTGTTGCTTTTACTGTCAGAGGTAACTACACAAAGCATCTTGACAAAGTATTGGAGGAAGCGGCAGTTGAGTTTTATCCAAATGTGAAATTTATGCGTGTTGAGTGCCCAAAGTATCCTGGTTTCTGCATTTCACGGCAGAGAAAAGAATATCCATTTATCGAGATGTTTCATAGTCCACAACAA

Coding sequence (CDS)

ACCTGTTATAGGTATTATACTGGTTACCCGAAAGATCTTGGGCCTTCTAGAGTCATACATTTTACATCTGAACGTGAGTTTGTCCAGCTCCTTCATGAAGGTTATCCAGTGGTTGTTGCTTTTACTGTCAGAGGTAACTACACAAAGCATCTTGACAAAGTATTGGAGGAAGCGGCAGTTGAGTTTTATCCAAATGTGAAATTTATGCGTGTTGAGTGCCCAAAGTATCCTGGTTTCTGCATTTCACGGCAGAGAAAAGAATATCCATTTATCGAGATGTTTCATAGTCCACAACAA

Protein sequence

TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAVEFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ

Homology

[Close]

BLAST of MS000892 vs. NCBI nr
Match: XP_022132238.1 (uncharacterized protein LOC111005143 [Momordica charantia] >XP_022132239.1 uncharacterized protein LOC111005143 [Momordica charantia])

HSP 1 Score: 208.4 bits (529), Expect = 2.9e-50
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 60
           TC +YYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV
Sbjct: 17  TC-KYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 76

Query: 61  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 100
           EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ
Sbjct: 77  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 114

[Close]

BLAST of MS000892 vs. NCBI nr
Match: XP_038885436.1 (uncharacterized protein LOC120075825 isoform X1 [Benincasa hispida] >XP_038885437.1 uncharacterized protein LOC120075825 isoform X1 [Benincasa hispida] >XP_038885438.1 uncharacterized protein LOC120075825 isoform X1 [Benincasa hispida] >XP_038885439.1 uncharacterized protein LOC120075825 isoform X1 [Benincasa hispida] >XP_038885440.1 uncharacterized protein LOC120075825 isoform X1 [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 60
           TC +YYTG+PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV
Sbjct: 17  TC-KYYTGFPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 76

Query: 61  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 100
           EFYPN+KFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ
Sbjct: 77  EFYPNIKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 114

[Close]

BLAST of MS000892 vs. NCBI nr
Match: XP_038885441.1 (uncharacterized protein LOC120075825 isoform X2 [Benincasa hispida])

HSP 1 Score: 206.5 bits (524), Expect = 1.1e-49
Identity = 95/99 (95.96%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 60
           TC +YYTG+PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV
Sbjct: 17  TC-KYYTGFPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 76

Query: 61  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 100
           EFYPN+KFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ
Sbjct: 77  EFYPNIKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 114

[Close]

BLAST of MS000892 vs. NCBI nr
Match: KAG6598213.1 (Type 2 DNA topoisomerase 6 subunit B-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 204.5 bits (519), Expect = 4.2e-49
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 60
           TC +YYTG+PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV
Sbjct: 17  TC-KYYTGFPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 76

Query: 61  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 100
           EFYP VKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ
Sbjct: 77  EFYPTVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 114

[Close]

BLAST of MS000892 vs. NCBI nr
Match: XP_022996547.1 (uncharacterized protein LOC111491762 [Cucurbita maxima] >XP_023545217.1 uncharacterized protein LOC111804696 [Cucurbita pepo subsp. pepo] >KAG7029196.1 hypothetical protein SDJN02_07533 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.5 bits (519), Expect = 4.2e-49
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 60
           TC +YYTG+PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV
Sbjct: 17  TC-KYYTGFPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 76

Query: 61  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 100
           EFYP VKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ
Sbjct: 77  EFYPTVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 114

[Close]

BLAST of MS000892 vs. ExPASy TrEMBL
Match: A0A6J1BSI0 (uncharacterized protein LOC111005143 OS=Momordica charantia OX=3673 GN=LOC111005143 PE=4 SV=1)

HSP 1 Score: 208.4 bits (529), Expect = 1.4e-50
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1   TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 60
           TC +YYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV
Sbjct: 17  TC-KYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 76

Query: 61  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 100
           EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ
Sbjct: 77  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 114

[Close]

BLAST of MS000892 vs. ExPASy TrEMBL
Match: A0A0A0LAW0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483780 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.1e-50
Identity = 93/99 (93.94%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 60
           TCYRYYTG+PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFT+R NY+KHLD VLEEAAV
Sbjct: 41  TCYRYYTGFPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRSNYSKHLDNVLEEAAV 100

Query: 61  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 100
           EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSP+Q
Sbjct: 101 EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPKQ 139

[Close]

BLAST of MS000892 vs. ExPASy TrEMBL
Match: A0A6J1K286 (uncharacterized protein LOC111491762 OS=Cucurbita maxima OX=3661 GN=LOC111491762 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.0e-49
Identity = 95/99 (95.96%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 60
           TC +YYTG+PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV
Sbjct: 17  TC-KYYTGFPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 76

Query: 61  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 100
           EFYP VKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ
Sbjct: 77  EFYPTVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 114

[Close]

BLAST of MS000892 vs. ExPASy TrEMBL
Match: A0A6J1HCY2 (uncharacterized protein LOC111462937 OS=Cucurbita moschata OX=3662 GN=LOC111462937 PE=4 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 5.9e-49
Identity = 94/99 (94.95%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 60
           TC +YYTG+PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV
Sbjct: 17  TC-KYYTGFPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 76

Query: 61  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 100
           EFYP VKFMRVECPKYPGFCISRQRKEYPFIEMFHSP+Q
Sbjct: 77  EFYPTVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPKQ 114

[Close]

BLAST of MS000892 vs. ExPASy TrEMBL
Match: A0A1S3BIH6 (uncharacterized protein LOC103489940 OS=Cucumis melo OX=3656 GN=LOC103489940 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.2e-48
Identity = 92/99 (92.93%), Postives = 97/99 (97.98%), Query Frame = 0


Query: 1   TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 60
           TC +YYTG+PKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFT+R NY+KHLDKVLEEAAV
Sbjct: 17  TC-KYYTGFPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTIRSNYSKHLDKVLEEAAV 76

Query: 61  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQQ 100
           EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSP+Q
Sbjct: 77  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPKQ 114

[Close]

BLAST of MS000892 vs. TAIR 10
Match: AT5G57230.1 (Thioredoxin superfamily protein )

HSP 1 Score: 188.7 bits (478), Expect = 2.2e-48
Identity = 82/98 (83.67%), Postives = 94/98 (95.92%), Query Frame = 0


Query: 1   TCYRYYTGYPKDLGPSRVIHFTSEREFVQLLHEGYPVVVAFTVRGNYTKHLDKVLEEAAV 60
           TC +YY+GYPKDLGPSRV+HFTSEREFVQLLH+GYPVVVAFT+R NYT+HLD++LEEAA 
Sbjct: 17  TC-KYYSGYPKDLGPSRVLHFTSEREFVQLLHQGYPVVVAFTIRSNYTQHLDRMLEEAAA 76

Query: 61  EFYPNVKFMRVECPKYPGFCISRQRKEYPFIEMFHSPQ 99
           EFYPN+KFMRVECPKYPGFCI+RQ+ EYPFIE+FHSPQ
Sbjct: 77  EFYPNIKFMRVECPKYPGFCITRQKNEYPFIEIFHSPQ 113

The following BLAST results are available for this feature:

BLAST of MS000892 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132238.1	2.9e-50	97.98	uncharacterized protein LOC111005143 [Momordica charantia] >XP_022132239.1 uncha...	[more]
XP_038885436.1	1.1e-49	95.96	uncharacterized protein LOC120075825 isoform X1 [Benincasa hispida] >XP_03888543...	[more]
XP_038885441.1	1.1e-49	95.96	uncharacterized protein LOC120075825 isoform X2 [Benincasa hispida]	[more]
KAG6598213.1	4.2e-49	95.96	Type 2 DNA topoisomerase 6 subunit B-like protein, partial [Cucurbita argyrosper...	[more]
XP_022996547.1	4.2e-49	95.96	uncharacterized protein LOC111491762 [Cucurbita maxima] >XP_023545217.1 uncharac...	[more]

BLAST of MS000892 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS000892 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BSI0	1.4e-50	97.98	uncharacterized protein LOC111005143 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]
A0A0A0LAW0	3.1e-50	93.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G483780 PE=4 SV=1	[more]
A0A6J1K286	2.0e-49	95.96	uncharacterized protein LOC111491762 OS=Cucurbita maxima OX=3661 GN=LOC111491762...	[more]
A0A6J1HCY2	5.9e-49	94.95	uncharacterized protein LOC111462937 OS=Cucurbita moschata OX=3662 GN=LOC1114629...	[more]
A0A1S3BIH6	2.2e-48	92.93	uncharacterized protein LOC103489940 OS=Cucumis melo OX=3656 GN=LOC103489940 PE=...	[more]

BLAST of MS000892 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57230.1	2.2e-48	83.67	Thioredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 10..99 e-value: 4.7E-6 score: 28.4
None	No IPR available	PANTHER	PTHR36076	THIOREDOXIN SUPERFAMILY PROTEIN	coord: 2..99
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 16..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000892.1	MS000892.1	mRNA