MS000831 (gene) Bitter gourd (TR) v1

Overview


Name	MS000831
Type	gene
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	(R)-mandelonitrile lyase-like
Location	scaffold236: 376749 .. 376912 (+)
RNA-Seq Expression	MS000831
Synteny	MS000831

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAGGCGGCACCGCCAGCTGCCCGTTGGCAGCAACGCTATCTGAGATGAGTGGGTTCTGGTGCTTGAAAGGGGCGGTGTTCCGTACGGAAAGCCTAATCTGATGACCCAAGAAGTCTTCCTCACCACTCTCATGGAGGCCGACGCTTTCGACTACCCGGCGCGG

mRNA sequence

GGAGGCGGCACCGCCAGCTGCCCGTTGGCAGCAACGCTATCTGAGATGAGTGTTCTGGTGCTTGAAAGGGGCGGTGTTCCGTACGGAAAGCCTAATCTGATGACCCAAGAAGTCTTCCTCACCACTCTCATGGAGGCCGACGCTTTCGACTACCCGGCGCGG

Coding sequence (CDS)

GGAGGCGGCACCGCCAGCTGCCCGTTGGCAGCAACGCTATCTGAGATGAGTGTTCTGGTGCTTGAAAGGGGCGGTGTTCCGTACGGAAAGCCTAATCTGATGACCCAAGAAGTCTTCCTCACCACTCTCATGGAGGCCGACGCTTTCGACTACCCGGCGCGG

Protein sequence

GGGTASCPLAATLSEMSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR

Homology

[Close]

BLAST of MS000831 vs. NCBI nr
Match: XP_022885009.1 ((R)-mandelonitrile lyase-like [Olea europaea var. sylvestris])

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   GGGTASCPLAATLSEM-SVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
           GGGTA CPLAATLSE   VLVLERGGVPYGKPNLMTQ+ FLTTLME DA+D PA+
Sbjct: 58  GGGTAGCPLAATLSEKHRVLVLERGGVPYGKPNLMTQDGFLTTLMEVDAYDSPAQ 112

[Close]

BLAST of MS000831 vs. NCBI nr
Match: CAA2959251.1 ((R)-mandelonitrile lyase-like [Olea europaea subsp. europaea])

HSP 1 Score: 91.3 bits (225), Expect = 2.8e-15
Identity = 45/55 (81.82%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   GGGTASCPLAATLSEM-SVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
           GGGTA CPLAATLSE   VLVLERGGVPYGKPNLMTQ+ FLTTLME DA+D PA+
Sbjct: 58  GGGTAGCPLAATLSEKHRVLVLERGGVPYGKPNLMTQDGFLTTLMEVDAYDSPAQ 112

[Close]

BLAST of MS000831 vs. NCBI nr
Match: XP_021910917.1 (LOW QUALITY PROTEIN: (R)-mandelonitrile lyase-like, partial [Carica papaya])

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 44/55 (80.00%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1   GGGTASCPLAATLS-EMSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
           GGGTA CPLAATLS    VLVLERGGVPYG+PNLMTQE FLTTLME D FD PA+
Sbjct: 52  GGGTAGCPLAATLSRSYRVLVLERGGVPYGRPNLMTQEGFLTTLMETDTFDSPAQ 106

[Close]

BLAST of MS000831 vs. NCBI nr
Match: XP_011072721.1 ((R)-mandelonitrile lyase-like [Sesamum indicum])

HSP 1 Score: 88.2 bits (217), Expect = 2.4e-14
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
           GGGTA CPLAATLSE   VLVLERGG+PYGKPNLMTQ+ FLTTL+EADA + PA+
Sbjct: 57  GGGTAGCPLAATLSEKFRVLVLERGGIPYGKPNLMTQDGFLTTLIEADAHESPAQ 111

[Close]

BLAST of MS000831 vs. NCBI nr
Match: KZV43456.1 ((R)-mandelonitrile lyase-like [Dorcoceras hygrometricum])

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-13
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
          GGGTA CPLAATLSE   VLVLERGGVPYG+PN+MTQ  FL TLME DA+D PA+
Sbjct: 22 GGGTAGCPLAATLSEHYRVLVLERGGVPYGQPNVMTQNGFLQTLMEVDAYDSPAQ 76

[Close]

BLAST of MS000831 vs. ExPASy Swiss-Prot
Match: Q9SSM2 ((R)-mandelonitrile lyase-like OS=Arabidopsis thaliana OX=3702 GN=At1g73050 PE=2 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.6e-13
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
           GGGTA CPLAATLS+   VL+LERGGVPY +PN+M+ + FLTTL + + FD PA+
Sbjct: 60  GGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHDGFLTTLTDVNNFDSPAQ 114

[Close]

BLAST of MS000831 vs. ExPASy Swiss-Prot
Match: O50048 ((R)-mandelonitrile lyase 2 OS=Prunus serotina OX=23207 GN=MDL2 PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.3e-07
Identity = 29/48 (60.42%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 1   GGGTASCPLAATLS-EMSVLVLERGGVPYGKPNLMTQEVFLTTLMEAD 48
           GGGTA CPLAATLS   SVLVLERG +P   PNL+T + F+  L + D
Sbjct: 61  GGGTAGCPLAATLSANYSVLVLERGTLPTEYPNLLTSDGFIYNLQQED 108

[Close]

BLAST of MS000831 vs. ExPASy Swiss-Prot
Match: P52706 ((R)-mandelonitrile lyase 1 OS=Prunus serotina OX=23207 GN=MDL1 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-07
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 1   GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEAD 48
           GGGT+ CPLAATLSE   VLVLERG +P   PN++T + F+  L + D
Sbjct: 60  GGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQED 107

[Close]

BLAST of MS000831 vs. ExPASy Swiss-Prot
Match: Q945K2 ((R)-mandelonitrile lyase 2 OS=Prunus dulcis OX=3755 GN=MDL2 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-07
Identity = 27/48 (56.25%), Postives = 34/48 (70.83%), Query Frame = 0


Query: 1   GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEAD 48
           GGGT+ CPLAATLSE   VLVLERG +P   PN++T + F+  L + D
Sbjct: 60  GGGTSGCPLAATLSEKYKVLVLERGSLPTAYPNVLTADGFVYNLQQED 107

[Close]

BLAST of MS000831 vs. ExPASy Swiss-Prot
Match: P52707 ((R)-mandelonitrile lyase 3 OS=Prunus serotina OX=23207 GN=MDL3 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.0e-07
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 1   GGGTASCPLAATLS-EMSVLVLERGGVPYGKPNLMTQEVFLTTLMEAD 48
           GGGTA CPLAATLS   SVLVLERG +P   PNL+  + F+  L + D
Sbjct: 60  GGGTAGCPLAATLSANYSVLVLERGSLPTEYPNLLISDGFVYNLQQED 107

[Close]

BLAST of MS000831 vs. ExPASy TrEMBL
Match: A0A6I9SS04 ((R)-mandelonitrile lyase-like OS=Sesamum indicum OX=4182 GN=LOC105157899 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.1e-14
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 0


Query: 1   GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
           GGGTA CPLAATLSE   VLVLERGG+PYGKPNLMTQ+ FLTTL+EADA + PA+
Sbjct: 57  GGGTAGCPLAATLSEKFRVLVLERGGIPYGKPNLMTQDGFLTTLIEADAHESPAQ 111

[Close]

BLAST of MS000831 vs. ExPASy TrEMBL
Match: A0A2Z7C9A2 ((R)-mandelonitrile lyase-like OS=Dorcoceras hygrometricum OX=472368 GN=F511_09899 PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 7.4e-14
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
          GGGTA CPLAATLSE   VLVLERGGVPYG+PN+MTQ  FL TLME DA+D PA+
Sbjct: 22 GGGTAGCPLAATLSEHYRVLVLERGGVPYGQPNVMTQNGFLQTLMEVDAYDSPAQ 76

[Close]

BLAST of MS000831 vs. ExPASy TrEMBL
Match: A0A5J5BIC5 (GMC_OxRdtase_N domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_022709 PE=3 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-13
Identity = 42/55 (76.36%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
           GGGTA CPLAATLSE   VLVLERGGV YGKPNLM+QE FL TLME D +D PA+
Sbjct: 61  GGGTAGCPLAATLSEYFRVLVLERGGVAYGKPNLMSQEGFLNTLMEGDTYDSPAQ 115

[Close]

BLAST of MS000831 vs. ExPASy TrEMBL
Match: A0A484M4L4 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS25489 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 42/55 (76.36%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
           GGGTA CPLAATLSE   VLVLERGGVP+G PNLMTQE FL  L E DAFD PA+
Sbjct: 55  GGGTAGCPLAATLSETYKVLVLERGGVPFGNPNLMTQEGFLAALSEVDAFDSPAQ 109

[Close]

BLAST of MS000831 vs. ExPASy TrEMBL
Match: A0A484L0D8 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS10668 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.7e-13
Identity = 42/55 (76.36%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
           GGGTA CPLAATLSE   VLVLERGGVP+G PNLMTQE FL  L E DAFD PA+
Sbjct: 101 GGGTAGCPLAATLSETYKVLVLERGGVPFGNPNLMTQEGFLAALSEVDAFDSPAQ 155

[Close]

BLAST of MS000831 vs. TAIR 10
Match: AT1G73050.1 (Glucose-methanol-choline (GMC) oxidoreductase family protein )

HSP 1 Score: 74.7 bits (182), Expect = 2.5e-14
Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
           GGGTA CPLAATLS+   VL+LERGGVPY +PN+M+ + FLTTL + + FD PA+
Sbjct: 60  GGGTAGCPLAATLSQSFRVLLLERGGVPYNRPNVMSHDGFLTTLTDVNNFDSPAQ 114

[Close]

BLAST of MS000831 vs. TAIR 10
Match: AT1G14190.1 (Glucose-methanol-choline (GMC) oxidoreductase family protein )

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-08
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 1  GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
          GGGTA C LAATLSE  SVLV+ERGG P+G P +  ++ F  +L+  D +   A+
Sbjct: 22 GGGTAGCSLAATLSEKYSVLVIERGGSPFGDPLVEERKYFGYSLLNTDEYSSVAQ 76

[Close]

BLAST of MS000831 vs. TAIR 10
Match: AT1G14185.1 (Glucose-methanol-choline (GMC) oxidoreductase family protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-07
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 0


Query: 1  GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTLMEADAFDYPAR 55
          GGGTA C LAATLSE  SVLV+ERGG P+G P +  ++ +  +L+  D +   A+
Sbjct: 43 GGGTAGCSLAATLSEKYSVLVIERGGSPFGDPLVEDKKYYGYSLINTDEYSSVAQ 97

[Close]

BLAST of MS000831 vs. TAIR 10
Match: AT5G51950.1 (Glucose-methanol-choline (GMC) oxidoreductase family protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-07
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1  GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTL 44
          GGGT+ C LAATLS+  SVLVLERGG PY  P     E F TTL
Sbjct: 52 GGGTSGCALAATLSQNASVLVLERGGAPYDNPTATDIENFATTL 95

[Close]

BLAST of MS000831 vs. TAIR 10
Match: AT5G51950.2 (Glucose-methanol-choline (GMC) oxidoreductase family protein )

HSP 1 Score: 52.8 bits (125), Expect = 1.0e-07
Identity = 28/44 (63.64%), Postives = 30/44 (68.18%), Query Frame = 0


Query: 1  GGGTASCPLAATLSE-MSVLVLERGGVPYGKPNLMTQEVFLTTL 44
          GGGT+ C LAATLS+  SVLVLERGG PY  P     E F TTL
Sbjct: 19 GGGTSGCALAATLSQNASVLVLERGGAPYDNPTATDIENFATTL 62

The following BLAST results are available for this feature:

BLAST of MS000831 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022885009.1	2.8e-15	81.82	(R)-mandelonitrile lyase-like [Olea europaea var. sylvestris]	[more]
CAA2959251.1	2.8e-15	81.82	(R)-mandelonitrile lyase-like [Olea europaea subsp. europaea]	[more]
XP_021910917.1	1.4e-14	80.00	LOW QUALITY PROTEIN: (R)-mandelonitrile lyase-like, partial [Carica papaya]	[more]
XP_011072721.1	2.4e-14	78.18	(R)-mandelonitrile lyase-like [Sesamum indicum]	[more]
KZV43456.1	1.5e-13	76.36	(R)-mandelonitrile lyase-like [Dorcoceras hygrometricum]	[more]

BLAST of MS000831 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSM2	3.6e-13	63.64	(R)-mandelonitrile lyase-like OS=Arabidopsis thaliana OX=3702 GN=At1g73050 PE=2 ...	[more]
O50048	1.3e-07	60.42	(R)-mandelonitrile lyase 2 OS=Prunus serotina OX=23207 GN=MDL2 PE=2 SV=1	[more]
P52706	2.9e-07	56.25	(R)-mandelonitrile lyase 1 OS=Prunus serotina OX=23207 GN=MDL1 PE=1 SV=1	[more]
Q945K2	2.9e-07	56.25	(R)-mandelonitrile lyase 2 OS=Prunus dulcis OX=3755 GN=MDL2 PE=1 SV=1	[more]
P52707	5.0e-07	58.33	(R)-mandelonitrile lyase 3 OS=Prunus serotina OX=23207 GN=MDL3 PE=2 SV=1	[more]

BLAST of MS000831 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6I9SS04	1.1e-14	78.18	(R)-mandelonitrile lyase-like OS=Sesamum indicum OX=4182 GN=LOC105157899 PE=3 SV...	[more]
A0A2Z7C9A2	7.4e-14	76.36	(R)-mandelonitrile lyase-like OS=Dorcoceras hygrometricum OX=472368 GN=F511_0989...	[more]
A0A5J5BIC5	1.3e-13	76.36	GMC_OxRdtase_N domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_02...	[more]
A0A484M4L4	1.7e-13	76.36	Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS25489 PE=3 ...	[more]
A0A484L0D8	1.7e-13	76.36	Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS10668 PE=3 ...	[more]

BLAST of MS000831 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G73050.1	2.5e-14	63.64	Glucose-methanol-choline (GMC) oxidoreductase family protein	[more]
AT1G14190.1	3.5e-08	50.91	Glucose-methanol-choline (GMC) oxidoreductase family protein	[more]
AT1G14185.1	1.0e-07	49.09	Glucose-methanol-choline (GMC) oxidoreductase family protein	[more]
AT5G51950.1	1.0e-07	63.64	Glucose-methanol-choline (GMC) oxidoreductase family protein	[more]
AT5G51950.2	1.0e-07	63.64	Glucose-methanol-choline (GMC) oxidoreductase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036188	FAD/NAD(P)-binding domain superfamily	GENE3D	3.50.50.60		coord: 1..52 e-value: 1.6E-10 score: 42.6
None	No IPR available	PANTHER	PTHR45968:SF2	(R)-MANDELONITRILE LYASE-LIKE	coord: 1..53
None	No IPR available	PANTHER	PTHR45968	OSJNBA0019K04.7 PROTEIN	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MS000831.1	MS000831.1	mRNA