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MS000414 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTCCGAAGCAGCCGAATTCTGGTCTCTTTGTTGGACTTAACAAAGGCCATGTTGTTACAAAGAAAGAGTTGGCTCCACGCCCCTCAGATCGTAAAGGAGTGAGTTTATTTTTGCTTCGTTTAACACACATGATTATATATATTATTTAAACTATTCCGTGTCTAAGTCTTATATGAAAAAAAAAGAAGCTTTCTACTTTGTATAGTTGGTTTTCTCAATTTTAAGTTTTTTACCCAATGGAATCTGAAATGCGAAGGAGATAGCTCGTGAGTATGCATTTGATTATTTTGCTTCCCATTATCATGTCAATTGAAAGTCTGAACGTAAACCTATTTGGACCATTATCAGTTTCTTTTGAAGATAATTTATTTCTTACCTTCCATGCATTAATTATTAATTTCTGCTTGTCATCAATTTGATTGACAATGTTGAAATCTTGCAAAATACTCTTCTTTGGTAGACTCTTGAGCATACTAAAACATTTTTCTTCTCATGTGAATTGAAACGTGTTTGGTTCTGGAATATTAATTTCATTCAAAATAATTTTAGTTGTCGCCTTGTAGAAGTCATTGACGTTAATGTCTATTGTCTCTGCAGAAAACTAGCAAAAGAGTTCTCTTTGTGAGGAGCTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTAGCTAAAAGAAAGCTCGGAACTCACAAGAGGGCTAAGAAGAAGAGAGAAGAGATGTCGAGTGTTCTCCGCAAGATGAGG ATGGCTCCGAAGCAGCCGAATTCTGGTCTCTTTGTTGGACTTAACAAAGGCCATGTTGTTACAAAGAAAGAGTTGGCTCCACGCCCCTCAGATCGTAAAGGAAAAACTAGCAAAAGAGTTCTCTTTGTGAGGAGCTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTAGCTAAAAGAAAGCTCGGAACTCACAAGAGGGCTAAGAAGAAGAGAGAAGAGATGTCGAGTGTTCTCCGCAAGATGAGG ATGGCTCCGAAGCAGCCGAATTCTGGTCTCTTTGTTGGACTTAACAAAGGCCATGTTGTTACAAAGAAAGAGTTGGCTCCACGCCCCTCAGATCGTAAAGGAAAAACTAGCAAAAGAGTTCTCTTTGTGAGGAGCTTGATCCGGGAAGTTGCTGGGTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTAGCTAAAAGAAAGCTCGGAACTCACAAGAGGGCTAAGAAGAAGAGAGAAGAGATGTCGAGTGTTCTCCGCAAGATGAGG MAPKQPNSGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR Homology
BLAST of MS000414 vs. NCBI nr
Match: XP_022140912.1 (60S ribosomal protein L36-2-like [Momordica charantia]) HSP 1 Score: 190.7 bits (483), Expect = 6.3e-45 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of MS000414 vs. NCBI nr
Match: XP_022155584.1 (60S ribosomal protein L36-2-like [Momordica charantia]) HSP 1 Score: 189.1 bits (479), Expect = 1.8e-44 Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of MS000414 vs. NCBI nr
Match: KAB5560697.1 (hypothetical protein DKX38_005654 [Salix brachista] >KAG5247062.1 60S ribosomal protein [Salix suchowensis]) HSP 1 Score: 189.1 bits (479), Expect = 1.8e-44 Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of MS000414 vs. NCBI nr
Match: KAF9683668.1 (hypothetical protein SADUNF_Sadunf04G0037700 [Salix dunnii]) HSP 1 Score: 188.7 bits (478), Expect = 2.4e-44 Identity = 100/101 (99.01%), Postives = 100/101 (99.01%), Query Frame = 0
BLAST of MS000414 vs. NCBI nr
Match: XP_002305746.1 (60S ribosomal protein L36-2 [Populus trichocarpa] >XP_034920856.1 60S ribosomal protein L36-2-like [Populus alba] >KAF9857567.1 hypothetical protein H0E87_009749 [Populus deltoides] >KAG6778865.1 hypothetical protein POTOM_015214 [Populus tomentosa] >ABK94139.1 unknown [Populus trichocarpa] >ABK95527.1 unknown [Populus trichocarpa] >PNT39743.1 hypothetical protein POPTR_004G057000 [Populus trichocarpa]) HSP 1 Score: 188.0 bits (476), Expect = 4.1e-44 Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of MS000414 vs. ExPASy Swiss-Prot
Match: O80929 (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 7.0e-39 Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 0
BLAST of MS000414 vs. ExPASy Swiss-Prot
Match: Q9M352 (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 9.2e-39 Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 0
BLAST of MS000414 vs. ExPASy Swiss-Prot
Match: Q9LZ57 (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 1.7e-37 Identity = 81/94 (86.17%), Postives = 90/94 (95.74%), Query Frame = 0
BLAST of MS000414 vs. ExPASy Swiss-Prot
Match: P52866 (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2) HSP 1 Score: 141.7 bits (356), Expect = 4.4e-33 Identity = 74/91 (81.32%), Postives = 81/91 (89.01%), Query Frame = 0
BLAST of MS000414 vs. ExPASy Swiss-Prot
Match: Q9LRB8 (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1) HSP 1 Score: 122.9 bits (307), Expect = 2.1e-27 Identity = 66/90 (73.33%), Postives = 76/90 (84.44%), Query Frame = 0
BLAST of MS000414 vs. ExPASy TrEMBL
Match: A0A6J1CID5 (60S ribosomal protein L36 OS=Momordica charantia OX=3673 GN=LOC111011461 PE=3 SV=1) HSP 1 Score: 190.7 bits (483), Expect = 3.1e-45 Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of MS000414 vs. ExPASy TrEMBL
Match: A0A6J1DQP8 (60S ribosomal protein L36 OS=Momordica charantia OX=3673 GN=LOC111022683 PE=3 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 8.9e-45 Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of MS000414 vs. ExPASy TrEMBL
Match: A0A5N5N0C2 (60S ribosomal protein L36 OS=Salix brachista OX=2182728 GN=DKX38_005654 PE=3 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 8.9e-45 Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of MS000414 vs. ExPASy TrEMBL
Match: A0A6N2N9L4 (60S ribosomal protein L36 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS473555 PE=3 SV=1) HSP 1 Score: 189.1 bits (479), Expect = 8.9e-45 Identity = 99/101 (98.02%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of MS000414 vs. ExPASy TrEMBL
Match: A9PCN6 (60S ribosomal protein L36 OS=Populus trichocarpa OX=3694 GN=POPTR_004G057000 PE=2 SV=1) HSP 1 Score: 188.0 bits (476), Expect = 2.0e-44 Identity = 98/101 (97.03%), Postives = 101/101 (100.00%), Query Frame = 0
BLAST of MS000414 vs. TAIR 10
Match: AT2G37600.1 (Ribosomal protein L36e family protein ) HSP 1 Score: 161.0 bits (406), Expect = 5.0e-40 Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 0
BLAST of MS000414 vs. TAIR 10
Match: AT2G37600.2 (Ribosomal protein L36e family protein ) HSP 1 Score: 161.0 bits (406), Expect = 5.0e-40 Identity = 83/94 (88.30%), Postives = 90/94 (95.74%), Query Frame = 0
BLAST of MS000414 vs. TAIR 10
Match: AT3G53740.2 (Ribosomal protein L36e family protein ) HSP 1 Score: 160.6 bits (405), Expect = 6.5e-40 Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 0
BLAST of MS000414 vs. TAIR 10
Match: AT3G53740.3 (Ribosomal protein L36e family protein ) HSP 1 Score: 160.6 bits (405), Expect = 6.5e-40 Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 0
BLAST of MS000414 vs. TAIR 10
Match: AT3G53740.4 (Ribosomal protein L36e family protein ) HSP 1 Score: 160.6 bits (405), Expect = 6.5e-40 Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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