Homology
BLAST of MS000409 vs. NCBI nr
Match:
XP_022141200.1 (uncharacterized protein LOC111011656 isoform X1 [Momordica charantia])
HSP 1 Score: 953.7 bits (2464), Expect = 6.3e-274
Identity = 496/538 (92.19%), Postives = 496/538 (92.19%), Query Frame = 0
Query: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI
Sbjct: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
Query: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL
Sbjct: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
Query: 121 EGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLT 180
EGLLQNGRLSMEQLVERAKSSKHA GNRPIPDVVHESLFKLLT
Sbjct: 121 EGLLQNGRLSMEQLVERAKSSKHA------------------GNRPIPDVVHESLFKLLT 180
Query: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME------- 240
AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME
Sbjct: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMEVLRFSMS 240
Query: 241 -----------------RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRS 300
RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRS
Sbjct: 241 ETNTEAEKSELPISGQKRKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRS 300
Query: 301 QFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS 360
QFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS
Sbjct: 301 QFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS 360
Query: 361 ALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDS 420
ALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDS
Sbjct: 361 ALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDS 420
Query: 421 SFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLN 480
SFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLN
Sbjct: 421 SFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLN 480
Query: 481 LQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 515
LQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 LQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 520
BLAST of MS000409 vs. NCBI nr
Match:
KAG6574180.1 (DNA-directed RNA polymerase III subunit RPC3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013236.1 DNA-directed RNA polymerase III subunit RPC3 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 885.6 bits (2287), Expect = 2.1e-253
Identity = 455/540 (84.26%), Postives = 479/540 (88.70%), Query Frame = 0
Query: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
M +TQ GIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILI
Sbjct: 1 MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
Query: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
QHNCVQAFT+VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLA+ASEKLEKDK+CEELL
Sbjct: 61 QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
Query: 121 EGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLT 180
EGLLQNGRLSMEQ++ERAKSSKHA GNRPIPDVV+ESL KLL
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------------GNRPIPDVVNESLLKLLN 180
Query: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME------- 240
AHFVERCPAPEP LS QVEEQPPP+KRGAKAAK+SEVP TLEQRLV ARPME
Sbjct: 181 AHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIG 240
Query: 241 -------------------RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHV 300
RK +L+ +QESGDADGIILWRANFDEFIRCLRHKACIEHV
Sbjct: 241 ETNTEAEESEHYSSISGQKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHV 300
Query: 301 RSQFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
RSQFDDG VNVLSAILEATRSSEK VKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS
Sbjct: 301 RSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
Query: 361 LSALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKIS 420
LSALGC GM+DYKINL+KIIEQAQI+EVESIVLKRYGRDAYRMFRFLS+TGGLVETEKIS
Sbjct: 361 LSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKIS 420
Query: 421 DSSFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHAS 480
DS+FVDKNEAPKILYRLWKDEYLYMEKVA+T PRHSLCLLWRVD+YNLWEHVLDEMYHAS
Sbjct: 421 DSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHAS 480
Query: 481 LNLQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 515
LNLQLRQAYEMEQDKELL+LPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 LNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522
BLAST of MS000409 vs. NCBI nr
Match:
XP_022945853.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata])
HSP 1 Score: 884.8 bits (2285), Expect = 3.6e-253
Identity = 454/540 (84.07%), Postives = 479/540 (88.70%), Query Frame = 0
Query: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
M +TQ GIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILI
Sbjct: 1 MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
Query: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
QHNCVQAFT+VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLA+ASEKLEKDK+CEELL
Sbjct: 61 QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
Query: 121 EGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLT 180
EGLLQNGRLSMEQ++ERAKSSKHA GNRPIPDVV+ESL KLL
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------------GNRPIPDVVNESLLKLLN 180
Query: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME------- 240
AHFVERCPAPEP LS QVEEQPPP+KRGAKAAK+SEVP TLEQRLV ARPME
Sbjct: 181 AHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIG 240
Query: 241 -------------------RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHV 300
RK +L+ +QESGDADGIILWRANFDEF+RCLRHKACIEHV
Sbjct: 241 ETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHV 300
Query: 301 RSQFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
RSQFDDG VNVLSAILEATRSSEK VKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS
Sbjct: 301 RSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
Query: 361 LSALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKIS 420
LSALGC GM+DYKINL+KIIEQAQI+EVESIVLKRYGRDAYRMFRFLS+TGGLVETEKIS
Sbjct: 361 LSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKIS 420
Query: 421 DSSFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHAS 480
DS+FVDKNEAPKILYRLWKDEYLYMEKVA+T PRHSLCLLWRVD+YNLWEHVLDEMYHAS
Sbjct: 421 DSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHAS 480
Query: 481 LNLQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 515
LNLQLRQAYEMEQDKELL+LPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 LNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522
BLAST of MS000409 vs. NCBI nr
Match:
XP_023541704.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 882.5 bits (2279), Expect = 1.8e-252
Identity = 454/540 (84.07%), Postives = 478/540 (88.52%), Query Frame = 0
Query: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
M +TQ GIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILI
Sbjct: 1 MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
Query: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
QHNCVQAFT+VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLA+ASEKLEKDK+CEELL
Sbjct: 61 QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
Query: 121 EGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLT 180
EGLLQNGRLSMEQ++ERAKSSKHA GNRP PDVV+ESL KLL
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------------GNRPSPDVVNESLLKLLN 180
Query: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME------- 240
AHFVERCPAPEP LS QVEEQPPP+KRGAKAAK+SEVP TLEQRLV ARPME
Sbjct: 181 AHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIG 240
Query: 241 -------------------RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHV 300
RK +L+ +QESGDADGIILWRANFDEFIRCLRHKACIEHV
Sbjct: 241 ETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHV 300
Query: 301 RSQFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
RSQFDDG VNVLSAILEATRSSEK VKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS
Sbjct: 301 RSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
Query: 361 LSALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKIS 420
LSALGC GM+DYKINL+KIIEQAQI+EVESIVLKRYGRDAYRMFRFLS+TGGLVETEKIS
Sbjct: 361 LSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKIS 420
Query: 421 DSSFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHAS 480
DS+FVDKNEAPKILYRLWKDEYLYMEKVA+T PRHSLCLLWRVD+YNLWEHVLDEMYHAS
Sbjct: 421 DSAFVDKNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRYNLWEHVLDEMYHAS 480
Query: 481 LNLQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 515
LNLQLRQAYEMEQDKELL+LPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 LNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522
BLAST of MS000409 vs. NCBI nr
Match:
XP_022968436.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima])
HSP 1 Score: 881.7 bits (2277), Expect = 3.0e-252
Identity = 454/540 (84.07%), Postives = 479/540 (88.70%), Query Frame = 0
Query: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
M +TQ GIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLLIRFTEL+SSQ+NNSLLILI
Sbjct: 1 MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELSSSQINNSLLILI 60
Query: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
QHNCVQAFT+VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLA+ASEKLEKDK+CEELL
Sbjct: 61 QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
Query: 121 EGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLT 180
EGLLQNGRLSMEQ++ERAKSSKHA GNRPIPDVV+ESL KLL
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------------GNRPIPDVVNESLLKLLN 180
Query: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME------- 240
AHFVERCPAPEP LS QVEEQPPP+KRGAKAAK+SEVP TLEQRLV ARPME
Sbjct: 181 AHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIG 240
Query: 241 -------------------RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHV 300
RK +L+ +QESGDADGIILWRANFDEFIRCLRHKACIEHV
Sbjct: 241 ETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHV 300
Query: 301 RSQFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
RSQFDDG VNVLSAILEATRSSEK VKTEITVPLSL+NIYEEVMKNEVGRSMTLDRVEAS
Sbjct: 301 RSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLENIYEEVMKNEVGRSMTLDRVEAS 360
Query: 361 LSALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKIS 420
LSALGC GM+DYKINL+KIIEQAQI+EVESIVLKRYGRDAYRMFRFLS+TGGLVETEKIS
Sbjct: 361 LSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKIS 420
Query: 421 DSSFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHAS 480
DS+FVDKNEAPKILYRLWKDEYLYMEKVA+T PR+SLCLLWRVD+YNLWEHVLDEMYHAS
Sbjct: 421 DSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRYSLCLLWRVDRYNLWEHVLDEMYHAS 480
Query: 481 LNLQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 515
LNLQLRQAYEMEQDKELL+LPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 LNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522
BLAST of MS000409 vs. ExPASy Swiss-Prot
Match:
Q9BUI4 (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C PE=1 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 2.3e-24
Identity = 122/495 (24.65%), Postives = 217/495 (43.84%), Query Frame = 0
Query: 4 TQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILIQHN 63
TQ IK ++ HFG +V K+ L+R G LR++ T + QV +L +L+QHN
Sbjct: 2 TQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQHN 61
Query: 64 CVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELLEGL 123
V + + +Y A S +L +R+ +++ ++ L D E ++E L
Sbjct: 62 LV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYI-YTTKTLYSDTG-ELIVEEL 121
Query: 124 LQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLTAHF 183
L NG+L+M +V++ RL+ ++ G V + +L HF
Sbjct: 122 LLNGKLTMSAVVKKVA-------------DRLT-ETMEDGKTMDYAEVSNTFVRLADTHF 181
Query: 184 VERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMERKHDELEAVQ 243
V+RCP+ P PPP A I+E L +L + + R+ + +A
Sbjct: 182 VQRCPS-VPTTENSDPGPPPP----APTLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAG 241
Query: 244 E-------------SGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL 303
E D I W+AN D F + R +A + V ++ D ++ +L
Sbjct: 242 EPKAKRPKYTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML 301
Query: 304 EATRSSEKTVKTE--ITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGC 363
R SE T + T PLS + I+ + K + + +TL D + G
Sbjct: 302 ---RMSEITTSSSAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 361
Query: 364 PGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDSSFVD 423
G Y INL K + +ES+V +R+G R+FR + + +E +++ D + +
Sbjct: 362 SGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH-IEQKQVEDFAMIP 421
Query: 424 KNEAPKILYRLWKDEYLYMEKVALTGPRHS---LCLLWRVDKYNLWEHVLDEMYHASLNL 473
EA +LY++ + ++ ++++ T P H+ L+ V+ + +L Y + NL
Sbjct: 422 AKEAKDMLYKMLSENFMSLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSIANL 461
BLAST of MS000409 vs. ExPASy Swiss-Prot
Match:
Q2TBL4 (DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=2 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 3.8e-24
Identity = 123/495 (24.85%), Postives = 217/495 (43.84%), Query Frame = 0
Query: 4 TQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILIQHN 63
TQ IK ++ HFG +V K+ L+R G LR++ T + QV +L +LIQHN
Sbjct: 2 TQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQHN 61
Query: 64 CVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELLEGL 123
V + + +Y A + +L +R+ +++ A + L D E ++E L
Sbjct: 62 LV---------TYQVHKRGVVEYEAQCNRVLRMLRYPRYIYTA-KTLYSDTG-ELIVEEL 121
Query: 124 LQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLTAHF 183
L NG+++M +V++ RL+ ++ G V + +L+ HF
Sbjct: 122 LLNGKMTMSAVVKKVA-------------DRLT-ETMEDGKTMDYAEVSNTFVRLVDTHF 181
Query: 184 VERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMERKHDELEAVQ 243
V+RCP P PPP A +SE L +L + + R+ + +A
Sbjct: 182 VQRCPL-VPATENSDTGPPPP----APTLVVSEKDMYLVPKLSLIGKGKRRRSSDEDATG 241
Query: 244 E-------------SGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAIL 303
E D I W+AN D F + R +A + V ++ D ++ +L
Sbjct: 242 EPKAKRPKQTTDNKEPIPDDGIYWQANLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML 301
Query: 304 EATRSSEKTVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGC 363
R SE T + T PLS + I+ + K + + +TL D + G
Sbjct: 302 ---RMSEVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFVGKSGD 361
Query: 364 PGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDSSFVD 423
G Y INL K + +ES+V +R+G R+FR + + L E +++ D + +
Sbjct: 362 SGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIP 421
Query: 424 KNEAPKILYRLWKDEYLYMEKVALTGPRHS---LCLLWRVDKYNLWEHVLDEMYHASLNL 473
EA +LY++ + ++ ++++ T P H+ L+ V+ + +L Y + NL
Sbjct: 422 AKEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHRCYKSVANL 461
BLAST of MS000409 vs. ExPASy Swiss-Prot
Match:
Q5XIL3 (DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Polr3c PE=2 SV=1)
HSP 1 Score: 112.1 bits (279), Expect = 1.9e-23
Identity = 120/494 (24.29%), Postives = 216/494 (43.72%), Query Frame = 0
Query: 4 TQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILIQHN 63
TQ IK ++ HFG +V K+ L+R G LR++ T+ + QV +L +LI HN
Sbjct: 2 TQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHHN 61
Query: 64 CVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELLEGL 123
V + + +Y A S +L +R+ +++ ++ L D E ++E L
Sbjct: 62 LV---------IYHVHKRGVVEYEAQCSRVLRMLRYPRYI-YTTKTLYGDTG-ELIVEEL 121
Query: 124 LQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLTAHF 183
L NG+++M +V++ RL+ ++ G V + +L HF
Sbjct: 122 LLNGKMTMSAVVKKVA-------------DRLT-ETMEDGKTMDYAEVSNAFVRLADTHF 181
Query: 184 VERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMERKHDELEAV- 243
V+RCP P + PPP A I+E L +L + + R+ + +A
Sbjct: 182 VQRCPL-VPDTDSSDPGPPPP----APNLVINEKDMYLVPKLSLIGKGKRRRSSDEDAAG 241
Query: 244 -----------QESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILE 303
E D I W+ N D F + R +A + V ++ D ++ +L
Sbjct: 242 EPKAKKPRCTDNEEPTPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML- 301
Query: 304 ATRSSEKTVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGCP 363
R SE T + T PLS + I+ + K + + +TL D + G
Sbjct: 302 --RMSEITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKAGDS 361
Query: 364 GMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDSSFVDK 423
G Y INL K + +ES++ +R+G R+FR + + L E +++ D + +
Sbjct: 362 GGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPA 421
Query: 424 NEAPKILYRLWKDEYLYMEKVALTGPRHS---LCLLWRVDKYNLWEHVLDEMYHASLNLQ 473
EA +LY++ + ++ ++++ T P H+ L+ V+ + +L Y + NL
Sbjct: 422 KEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLI 460
BLAST of MS000409 vs. ExPASy Swiss-Prot
Match:
Q9D483 (DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c PE=1 SV=1)
HSP 1 Score: 110.9 bits (276), Expect = 4.3e-23
Identity = 119/494 (24.09%), Postives = 216/494 (43.72%), Query Frame = 0
Query: 4 TQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILIQHN 63
TQ IK ++ HFG +V K+ L+R G LR++ T+ + QV +L +LI HN
Sbjct: 2 TQAEIKLCSLLLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHHN 61
Query: 64 CVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELLEGL 123
V + + +Y A S +L +R+ +++ ++ L D E ++E L
Sbjct: 62 LVL---------YHVHKRGVVEYEAQCSRVLRMLRYPRYI-YTTKTLYGDTG-ELIVEEL 121
Query: 124 LQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLTAHF 183
L NG+++M +V++ RL+ ++ G V + +L HF
Sbjct: 122 LLNGKMTMSAVVKKVA-------------DRLT-ETMEDGKTMDYAEVSNAFVRLADTHF 181
Query: 184 VERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMERKHDELEAVQ 243
V+RCP P + PPP A I+E L +L + + R+ + +A
Sbjct: 182 VQRCPL-VPDTDSSDRGPPPP----APTLVINEKDMYLVPKLSLIGKGKRRRSSDEDATG 241
Query: 244 E------------SGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILE 303
E D I W+ N D F + R +A + V ++ D ++ +L
Sbjct: 242 EPKAKKPRYTDNKEPSPDDGIYWQVNLDRFHQHFRDQAIVSAVANRMDQTSSEIVRTML- 301
Query: 304 ATRSSEKTVKTE--ITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEASLSALGCP 363
R SE T + T PLS + I+ + K + + +TL D + G
Sbjct: 302 --RMSEITTPSSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEFIGKSGDS 361
Query: 364 GMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDSSFVDK 423
G + INL K + +ES++ +R+G R+FR + + L E +++ D + +
Sbjct: 362 GGGMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVEDFAMIPA 421
Query: 424 NEAPKILYRLWKDEYLYMEKVALTGPRHS---LCLLWRVDKYNLWEHVLDEMYHASLNLQ 473
EA +LY++ + ++ ++++ T P H+ L+ V+ + +L Y + NL
Sbjct: 422 KEAKDMLYKMLSENFILLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCYKSIANLI 460
BLAST of MS000409 vs. ExPASy Swiss-Prot
Match:
Q55FJ5 (DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=44689 GN=polr3c PE=3 SV=1)
HSP 1 Score: 75.1 bits (183), Expect = 2.6e-12
Identity = 131/679 (19.29%), Postives = 253/679 (37.26%), Query Frame = 0
Query: 9 KYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTE----LNSSQVNNSLLILIQHNC 68
K A+ I+ FG+ V KV E L+++G + +++ + L ++ LL+LIQHN
Sbjct: 5 KVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQHNL 64
Query: 69 V---QAFTSVTEGEF-----GDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNC 128
V + +T+ E G+ +D+ Y A+ N +HR+RF KF+ K K
Sbjct: 65 VTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYI--KHSKGDEA 124
Query: 129 EELLEGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLF 188
+LE L+ +GRL M+ L+++A S++ V F I ++
Sbjct: 125 AYILEELIDHGRLPMDLLIKQA--------------SQIQRVDTFEDQDDITKRFEDTFT 184
Query: 189 KLLTAHFVERCPAPEPIL--------------------------SAQVEEQPP------- 248
KL+ F+ R P P P+ + Q ++ P
Sbjct: 185 KLIMDQFIMRAPRPRPVSDQETSNALSKEAKKVGGGGANGNNVGAHQKKDSDPFALPSVG 244
Query: 249 -----------------------------------PKKRGAK---AAKISEVPETLEQRL 308
PKK AK A S T
Sbjct: 245 FSSNGPLSSVDNSANDAESLEILTGKSSTTTIPSQPKKGTAKKTSAKPKSTAINTTATAS 304
Query: 309 VGVARPMERKHDE-------LEAVQESGDA------------------------------ 368
+G R +DE L ++E+ +
Sbjct: 305 LGRKRKSRDIYDEDDDEEPDLLVIEENVEINVNDHNSANKNSTTTTTTTTTKTGQHTLKK 364
Query: 369 ----------------------------DGIILWRANFDEFIRCLRHKACIEHVRSQFDD 428
+ +LW N+++FI + KAC + V + +
Sbjct: 365 SKLDQSSSTTTTSSRQQQNGMDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQ 424
Query: 429 GVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKN-EVGRSMTLDRVEASLSALG 488
+ +A+++ + S ++ + +T + +NI EE ++ + + M ++E LS +
Sbjct: 425 QSGLLFNAMVKLCKRSIRSNQDSLTSCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQ 484
Query: 489 C--PGM----------------DDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFL 515
P M Y++N+ II + + VESI+ +++G + R+F+ L
Sbjct: 485 ASRPSMVTKMVSKSKQSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLL 544
BLAST of MS000409 vs. ExPASy TrEMBL
Match:
A0A6J1CHB3 (DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=LOC111011656 PE=3 SV=1)
HSP 1 Score: 953.7 bits (2464), Expect = 3.0e-274
Identity = 496/538 (92.19%), Postives = 496/538 (92.19%), Query Frame = 0
Query: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI
Sbjct: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
Query: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL
Sbjct: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
Query: 121 EGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLT 180
EGLLQNGRLSMEQLVERAKSSKHA GNRPIPDVVHESLFKLLT
Sbjct: 121 EGLLQNGRLSMEQLVERAKSSKHA------------------GNRPIPDVVHESLFKLLT 180
Query: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME------- 240
AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME
Sbjct: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMEVLRFSMS 240
Query: 241 -----------------RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRS 300
RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRS
Sbjct: 241 ETNTEAEKSELPISGQKRKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRS 300
Query: 301 QFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS 360
QFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS
Sbjct: 301 QFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS 360
Query: 361 ALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDS 420
ALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDS
Sbjct: 361 ALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDS 420
Query: 421 SFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLN 480
SFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLN
Sbjct: 421 SFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLN 480
Query: 481 LQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 515
LQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 LQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 520
BLAST of MS000409 vs. ExPASy TrEMBL
Match:
A0A6J1G256 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LOC111449973 PE=3 SV=1)
HSP 1 Score: 884.8 bits (2285), Expect = 1.7e-253
Identity = 454/540 (84.07%), Postives = 479/540 (88.70%), Query Frame = 0
Query: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
M +TQ GIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILI
Sbjct: 1 MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60
Query: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
QHNCVQAFT+VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLA+ASEKLEKDK+CEELL
Sbjct: 61 QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
Query: 121 EGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLT 180
EGLLQNGRLSMEQ++ERAKSSKHA GNRPIPDVV+ESL KLL
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------------GNRPIPDVVNESLLKLLN 180
Query: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME------- 240
AHFVERCPAPEP LS QVEEQPPP+KRGAKAAK+SEVP TLEQRLV ARPME
Sbjct: 181 AHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIG 240
Query: 241 -------------------RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHV 300
RK +L+ +QESGDADGIILWRANFDEF+RCLRHKACIEHV
Sbjct: 241 ETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHV 300
Query: 301 RSQFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
RSQFDDG VNVLSAILEATRSSEK VKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS
Sbjct: 301 RSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
Query: 361 LSALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKIS 420
LSALGC GM+DYKINL+KIIEQAQI+EVESIVLKRYGRDAYRMFRFLS+TGGLVETEKIS
Sbjct: 361 LSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKIS 420
Query: 421 DSSFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHAS 480
DS+FVDKNEAPKILYRLWKDEYLYMEKVA+T PRHSLCLLWRVD+YNLWEHVLDEMYHAS
Sbjct: 421 DSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHAS 480
Query: 481 LNLQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 515
LNLQLRQAYEMEQDKELL+LPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 LNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522
BLAST of MS000409 vs. ExPASy TrEMBL
Match:
A0A6J1HUV1 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita maxima OX=3661 GN=LOC111467684 PE=3 SV=1)
HSP 1 Score: 881.7 bits (2277), Expect = 1.5e-252
Identity = 454/540 (84.07%), Postives = 479/540 (88.70%), Query Frame = 0
Query: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
M +TQ GIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLLIRFTEL+SSQ+NNSLLILI
Sbjct: 1 MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELSSSQINNSLLILI 60
Query: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
QHNCVQAFT+VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLA+ASEKLEKDK+CEELL
Sbjct: 61 QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120
Query: 121 EGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLT 180
EGLLQNGRLSMEQ++ERAKSSKHA GNRPIPDVV+ESL KLL
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------------GNRPIPDVVNESLLKLLN 180
Query: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME------- 240
AHFVERCPAPEP LS QVEEQPPP+KRGAKAAK+SEVP TLEQRLV ARPME
Sbjct: 181 AHFVERCPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIG 240
Query: 241 -------------------RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHV 300
RK +L+ +QESGDADGIILWRANFDEFIRCLRHKACIEHV
Sbjct: 241 ETNTEAEESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHV 300
Query: 301 RSQFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
RSQFDDG VNVLSAILEATRSSEK VKTEITVPLSL+NIYEEVMKNEVGRSMTLDRVEAS
Sbjct: 301 RSQFDDGAVNVLSAILEATRSSEKIVKTEITVPLSLENIYEEVMKNEVGRSMTLDRVEAS 360
Query: 361 LSALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKIS 420
LSALGC GM+DYKINL+KIIEQAQI+EVESIVLKRYGRDAYRMFRFLS+TGGLVETEKIS
Sbjct: 361 LSALGCSGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKIS 420
Query: 421 DSSFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHAS 480
DS+FVDKNEAPKILYRLWKDEYLYMEKVA+T PR+SLCLLWRVD+YNLWEHVLDEMYHAS
Sbjct: 421 DSAFVDKNEAPKILYRLWKDEYLYMEKVAITVPRYSLCLLWRVDRYNLWEHVLDEMYHAS 480
Query: 481 LNLQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 515
LNLQLRQAYEMEQDKELL+LPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 LNLQLRQAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522
BLAST of MS000409 vs. ExPASy TrEMBL
Match:
A0A6J1CIE4 (DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=LOC111011656 PE=3 SV=1)
HSP 1 Score: 880.9 bits (2275), Expect = 2.5e-252
Identity = 468/538 (86.99%), Postives = 468/538 (86.99%), Query Frame = 0
Query: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI
Sbjct: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
Query: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL
Sbjct: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
Query: 121 EGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLT 180
EGLLQNGRLSMEQLVERAKSSKHA GNRPIPDVVHESLFKLLT
Sbjct: 121 EGLLQNGRLSMEQLVERAKSSKHA------------------GNRPIPDVVHESLFKLLT 180
Query: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME------- 240
AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME
Sbjct: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMEVLRFSMS 240
Query: 241 -----------------RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRS 300
RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRS
Sbjct: 241 ETNTEAEKSELPISGQKRKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRS 300
Query: 301 QFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS 360
QFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS
Sbjct: 301 QFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS 360
Query: 361 ALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDS 420
ALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEK
Sbjct: 361 ALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEK---- 420
Query: 421 SFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLN 480
KVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLN
Sbjct: 421 ------------------------KVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLN 480
Query: 481 LQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 515
LQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF
Sbjct: 481 LQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 492
BLAST of MS000409 vs. ExPASy TrEMBL
Match:
A0A1S3AYY3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC103484083 PE=3 SV=1)
HSP 1 Score: 830.5 bits (2144), Expect = 3.9e-237
Identity = 429/540 (79.44%), Postives = 458/540 (84.81%), Query Frame = 0
Query: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60
M TQ GIKYAVHI+TAHFGNLVAKVCETLLRKGPLTLRLLIRFTEL SQVNNSLLILI
Sbjct: 1 MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60
Query: 61 QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120
QHNCVQAFT VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLA+AS+KL +DKNC+ELL
Sbjct: 61 QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120
Query: 121 EGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKLLT 180
EGLLQNGRLSMEQ+VERA+SS A GNRPIPDVVH+SLFKLL
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRA------------------GNRPIPDVVHDSLFKLLN 180
Query: 181 AHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPME------- 240
AHFVERCPAPEP LS +VEEQPPP+KRGAKAAKI EVPETLEQRL+ ARP+E
Sbjct: 181 AHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMG 240
Query: 241 -------------------RKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHV 300
RKHDELE Q+SG ADG ILWRAN+DEFIRCLRHKAC+EHV
Sbjct: 241 DTNPEAEKSEHYSQISGQKRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHV 300
Query: 301 RSQFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
RSQFDDGVVNVLSA LEATRSSEK VKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS
Sbjct: 301 RSQFDDGVVNVLSAFLEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEAS 360
Query: 361 LSALGCPGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKIS 420
L+ALGCPGMDDYKINLR+I+EQAQ +EVESIVLKRYGRDAYRMFRFLS+TGGLVETEKIS
Sbjct: 361 LAALGCPGMDDYKINLRRIVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKIS 420
Query: 421 DSSFVDKNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHAS 480
DSSFVDKNEAPKILYRLWKDEYLYMEKVA+T PRHSLCLLWRVD+YNLWEHVLDEMYHAS
Sbjct: 421 DSSFVDKNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHAS 480
Query: 481 LNLQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 515
LNLQLR A+E+E++KELLSLP D PL K+ + VR LL SSL+KLDDALMLFHDF
Sbjct: 481 LNLQLRLAHEIEENKELLSLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDALMLFHDF 522
BLAST of MS000409 vs. TAIR 10
Match:
AT3G49000.1 (RNA polymerase III subunit RPC82 family protein )
HSP 1 Score: 433.0 bits (1112), Expect = 3.5e-121
Identity = 242/550 (44.00%), Postives = 349/550 (63.45%), Query Frame = 0
Query: 1 MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTE--LNSSQVNNSLLI 60
M ++ GI YA+HIIT FG++V+KVCE LLRKGPL+ R + R E +N ++V + L +
Sbjct: 1 MSMSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYL 60
Query: 61 LIQHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEE 120
LIQHNCVQAF+ E G K QY+ LF+NILHR+R++KF + +E+L D C
Sbjct: 61 LIQHNCVQAFS--IEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEEL--DSKCGA 120
Query: 121 LLEGLLQNGRLSMEQLVERAKSSKHAGKFIISKHSRLSIVSVFSGNRPIPDVVHESLFKL 180
+L+GLL NGRL++ Q +ER + SGN + + +SL KL
Sbjct: 121 VLDGLLSNGRLTLGQFIERDRD---------------------SGNTIGSEAIRDSLQKL 180
Query: 181 LTAHFVERCPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMERKHDE 240
+ A FVER P+PEP+L +E+ P K+RGAKAAKI + PETLE+++V A P++
Sbjct: 181 VAARFVERIPSPEPVLGN--KEKEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFP 240
Query: 241 LEAVQES-----------------------GDADGIILWRANFDEFIRCLRHKACIEHVR 300
L ++S D+ ++WR NF+EFI LRHKAC+E V+
Sbjct: 241 LIFEEDSNSSLADDNSNITEGKRKQRDVDTSDSSSGVIWRPNFEEFIHRLRHKACVEIVK 300
Query: 301 SQFDDGVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL 360
+ D+G VL A+LE RS EK VKT+ + P+S+ +IYEEV+K E GR+M +RVEA L
Sbjct: 301 ERRDEGCAIVLRAMLEVGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACL 360
Query: 361 SALGCPGM----------DDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTG 420
L D Y ++ + II AQ +E+E++V++RYG++A+RMFR+LS+ G
Sbjct: 361 DQLSATSSYLPAFVNEVNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEG 420
Query: 421 GLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTGP-RHSLCLLWRVDKYNLWE 480
VET+KI+D++ +K + P+ L ++WKD YL+M+K+A+T P ++ LLW+V+K +
Sbjct: 421 RFVETDKIADAALTEKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTT 480
Query: 481 HVLDEMYHASLNLQLRQAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKL 515
+LDEMYHASLNL LR A+E+E +KELL LP DK GPL++R +++ R+LL S++ KL
Sbjct: 481 QMLDEMYHASLNLSLRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKL 523
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022141200.1 | 6.3e-274 | 92.19 | uncharacterized protein LOC111011656 isoform X1 [Momordica charantia] | [more] |
KAG6574180.1 | 2.1e-253 | 84.26 | DNA-directed RNA polymerase III subunit RPC3, partial [Cucurbita argyrosperma su... | [more] |
XP_022945853.1 | 3.6e-253 | 84.07 | DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata] | [more] |
XP_023541704.1 | 1.8e-252 | 84.07 | DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo] | [more] |
XP_022968436.1 | 3.0e-252 | 84.07 | DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Q9BUI4 | 2.3e-24 | 24.65 | DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C P... | [more] |
Q2TBL4 | 3.8e-24 | 24.85 | DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=... | [more] |
Q5XIL3 | 1.9e-23 | 24.29 | DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Po... | [more] |
Q9D483 | 4.3e-23 | 24.09 | DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c ... | [more] |
Q55FJ5 | 2.6e-12 | 19.29 | DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=4468... | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1CHB3 | 3.0e-274 | 92.19 | DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=L... | [more] |
A0A6J1G256 | 1.7e-253 | 84.07 | DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LO... | [more] |
A0A6J1HUV1 | 1.5e-252 | 84.07 | DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita maxima OX=3661 GN=LOC1... | [more] |
A0A6J1CIE4 | 2.5e-252 | 86.99 | DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=L... | [more] |
A0A1S3AYY3 | 3.9e-237 | 79.44 | DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC10348... | [more] |
Match Name | E-value | Identity | Description | |
AT3G49000.1 | 3.5e-121 | 44.00 | RNA polymerase III subunit RPC82 family protein | [more] |