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MS000404 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTGATCAGAGCTGAACGAAAGATAGCTTCCACTGAAGCATGGGAGAGCTCAAAGCAAGTTGCTTCGGGAGTTAAAGTCAAAAAGATTGAGGTTTTTTTCTTCTCTTTCTCCTTTTGTGGGTGTGCTTTAATTTTCATTTTACCATAAGTTTAGAAAACCCTAAAAAAAATTAATTTGGAAAATTAAAGGCTGAATTGGAGAGATTAAAGCTAAAGATGATTGAGAAGGTACGAAACAAAGAGGCAGAATCACATATAGCAGCAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAAGCATCAAAAACAGAAGGTTGAGGAGAAAGCTGCTAAGCATCGCTCTACCAATACAATTCCATCCAAGTGTTTTGGTATTTTCGAAGAC TTGATCAGAGCTGAACGAAAGATAGCTTCCACTGAAGCATGGGAGAGCTCAAAGCAAGTTGCTTCGGGAGTTAAAGTCAAAAAGATTGAGGCTGAATTGGAGAGATTAAAGCTAAAGATGATTGAGAAGGTACGAAACAAAGAGGCAGAATCACATATAGCAGCAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAAGCATCAAAAACAGAAGGTTGAGGAGAAAGCTGCTAAGCATCGCTCTACCAATACAATTCCATCCAAGTGTTTTGGTATTTTCGAAGAC TTGATCAGAGCTGAACGAAAGATAGCTTCCACTGAAGCATGGGAGAGCTCAAAGCAAGTTGCTTCGGGAGTTAAAGTCAAAAAGATTGAGGCTGAATTGGAGAGATTAAAGCTAAAGATGATTGAGAAGGTACGAAACAAAGAGGCAGAATCACATATAGCAGCAGAATCAAAGAAAGCAAACATTGAGGTTGAGAGAAAGCATCAAAAACAGAAGGTTGAGGAGAAAGCTGCTAAGCATCGCTCTACCAATACAATTCCATCCAAGTGTTTTGGTATTTTCGAAGAC LIRAERKIASTEAWESSKQVASGVKVKKIEAELERLKLKMIEKVRNKEAESHIAAESKKANIEVERKHQKQKVEEKAAKHRSTNTIPSKCFGIFED Homology
BLAST of MS000404 vs. NCBI nr
Match: KGN57373.1 (hypothetical protein Csa_010046 [Cucumis sativus]) HSP 1 Score: 103.6 bits (257), Expect = 9.7e-19 Identity = 56/94 (59.57%), Postives = 76/94 (80.85%), Query Frame = 0
BLAST of MS000404 vs. NCBI nr
Match: XP_004140777.2 (remorin [Cucumis sativus]) HSP 1 Score: 77.0 bits (188), Expect = 9.7e-11 Identity = 46/87 (52.87%), Postives = 68/87 (78.16%), Query Frame = 0
BLAST of MS000404 vs. NCBI nr
Match: KAA0033641.1 (remorin-like [Cucumis melo var. makuwa] >TYK22940.1 remorin-like [Cucumis melo var. makuwa]) HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10 Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 0
BLAST of MS000404 vs. NCBI nr
Match: XP_022867512.1 (remorin-like [Olea europaea var. sylvestris] >CAA2997354.1 remorin-like [Olea europaea subsp. europaea]) HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10 Identity = 44/92 (47.83%), Postives = 63/92 (68.48%), Query Frame = 0
BLAST of MS000404 vs. NCBI nr
Match: TYK22939.1 (remorin [Cucumis melo var. makuwa]) HSP 1 Score: 75.9 bits (185), Expect = 2.2e-10 Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of MS000404 vs. ExPASy Swiss-Prot
Match: Q9FFA5 (Remorin 1.4 OS=Arabidopsis thaliana OX=3702 GN=REM1.4 PE=1 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 2.0e-11 Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = 0
BLAST of MS000404 vs. ExPASy Swiss-Prot
Match: Q9M2D8 (Uncharacterized protein At3g61260 OS=Arabidopsis thaliana OX=3702 GN=At3g61260 PE=1 SV=1) HSP 1 Score: 67.4 bits (163), Expect = 1.0e-10 Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0
BLAST of MS000404 vs. ExPASy Swiss-Prot
Match: P93788 (Remorin OS=Solanum tuberosum OX=4113 PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.3e-10 Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 0
BLAST of MS000404 vs. ExPASy Swiss-Prot
Match: O80837 (Remorin OS=Arabidopsis thaliana OX=3702 GN=DBP PE=1 SV=1) HSP 1 Score: 63.9 bits (154), Expect = 1.1e-09 Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 0
BLAST of MS000404 vs. ExPASy TrEMBL
Match: A0A0A0L6I9 (Remorin_C domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G182090 PE=3 SV=1) HSP 1 Score: 103.6 bits (257), Expect = 4.7e-19 Identity = 56/94 (59.57%), Postives = 76/94 (80.85%), Query Frame = 0
BLAST of MS000404 vs. ExPASy TrEMBL
Match: A0A5D3DHT0 (Remorin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00180 PE=4 SV=1) HSP 1 Score: 76.6 bits (187), Expect = 6.1e-11 Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 0
BLAST of MS000404 vs. ExPASy TrEMBL
Match: A0A5D3DI57 (Remorin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold386G00170 PE=3 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10 Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of MS000404 vs. ExPASy TrEMBL
Match: A0A5A7SRU5 (Remorin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold239G00800 PE=3 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10 Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of MS000404 vs. ExPASy TrEMBL
Match: A0A1S3AXW2 (remorin OS=Cucumis melo OX=3656 GN=LOC103484075 PE=3 SV=1) HSP 1 Score: 75.9 bits (185), Expect = 1.0e-10 Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = 0
BLAST of MS000404 vs. TAIR 10
Match: AT5G23750.1 (Remorin family protein ) HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12 Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = 0
BLAST of MS000404 vs. TAIR 10
Match: AT5G23750.2 (Remorin family protein ) HSP 1 Score: 69.7 bits (169), Expect = 1.4e-12 Identity = 39/90 (43.33%), Postives = 63/90 (70.00%), Query Frame = 0
BLAST of MS000404 vs. TAIR 10
Match: AT3G48940.1 (Remorin family protein ) HSP 1 Score: 68.6 bits (166), Expect = 3.2e-12 Identity = 40/92 (43.48%), Postives = 60/92 (65.22%), Query Frame = 0
BLAST of MS000404 vs. TAIR 10
Match: AT3G61260.1 (Remorin family protein ) HSP 1 Score: 67.4 bits (163), Expect = 7.2e-12 Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 0
BLAST of MS000404 vs. TAIR 10
Match: AT2G45820.1 (Remorin family protein ) HSP 1 Score: 63.9 bits (154), Expect = 7.9e-11 Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
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