![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
MS000385 (gene) Bitter gourd (TR) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TATGAAGATGAGCCACCAGAACCCGAGATGGAGGTAAGAAATCATTGGTTCAATTCTCTGTGAAAGAAAGTGGATTACTGTTCTTTTTTATTTTATAAATAATAGTGGAACTTGGATGATTCACAGGAAGGGGCTGAAGAAGAATTGGATAATAATAACAATGATGATGTTCTTGGTGAACCTGTTGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAGACCTCAAAATTTATGACAAAGTATGAACGTGCTAGAATTCTGGGTACACGTGCACTCCAGATCAGGTTTTCTTTCTCAACTTTTGTTACATCCAAATTTTTACTTGTCAGCACGTTGGAAAATAGTATGACAATTCTCTTTCCTTTTGAGCAGCATGAATGCTCCTGTGATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGGTTAGATTTTTAAATGTTCAGCTTTTGAAAAGTTCTCGTTTGGTTTTGGCATTCAGTACATGTATTTTAGTTGCCCCATATGTGCATGCAATAGTTAGTACGCCTACTCAAAATTAAAATTTATTGGATGATACTCTTGAATCTGGCTCATCGAGTTAACTAAAACATCTTGTTGTTTACAGTTCGATTAACCCATGCTGAACCCAAAGAAATGTGTTGCATGCCATCGTAGATCTGACTTACCAAGTTACTAAAACTGATAATATTGTTTGCAGTTTGTAATAGCTCATGCTTTTCTGACATCTCGTCTAACCCTATACTGTTTCAGATTGCAATGAAGGAGCTTCGTGAGCGAAAGATACCCTTCACAATCCGTCGCTACCTGCCAGATGGAAGGTTAGGACTCTTAGTTCTCATACTTCATTCTTTTTGTCATTCGGATTTACCTGTCAGCAGGGTGTGTAGAAAACCACGAAACTGGAAAGGAAATTTAATTTTTTAACTAAAAAAGAGAGAAACACTTGAGCTATCACAATATGCATTCTTTTACCACCCCACCCCCACTCCACCCGCAGCCGCCTTCTGCTAATTGCACCTGATTAATAATCGATTGCTGGTTCCTAGGATAGGATAAATTGGTTGATAAGTGAACTCTCTCCATTTTGTGCAGCTATGAGGACTGGGGTGTCGATGAACTGATCGTGGAGGACTCGTGGAAGAGGCAAGTTGGCGGCGCT TATGAAGATGAGCCACCAGAACCCGAGATGGAGGAAGGGGCTGAAGAAGAATTGGATAATAATAACAATGATGATGTTCTTGGTGAACCTGTTGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAGACCTCAAAATTTATGACAAAGTATGAACGTGCTAGAATTCTGGGTACACGTGCACTCCAGATCAGCATGAATGCTCCTGTGATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAGCTTCGTGAGCGAAAGATACCCTTCACAATCCGTCGCTACCTGCCAGATGGAAGCTATGAGGACTGGGGTGTCGATGAACTGATCGTGGAGGACTCGTGGAAGAGGCAAGTTGGCGGCGCT TATGAAGATGAGCCACCAGAACCCGAGATGGAGGAAGGGGCTGAAGAAGAATTGGATAATAATAACAATGATGATGTTCTTGGTGAACCTGTTGAAGCTGAGGAAAAGGAAGATGAAGAACCTGTTGAACGTGTGCGTAAGACCTCAAAATTTATGACAAAGTATGAACGTGCTAGAATTCTGGGTACACGTGCACTCCAGATCAGCATGAATGCTCCTGTGATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGAGATTGCAATGAAGGAGCTTCGTGAGCGAAAGATACCCTTCACAATCCGTCGCTACCTGCCAGATGGAAGCTATGAGGACTGGGGTGTCGATGAACTGATCGTGGAGGACTCGTGGAAGAGGCAAGTTGGCGGCGCT YEDEPPEPEMEEGAEEELDNNNNDDVLGEPVEAEEKEDEEPVERVRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRERKIPFTIRRYLPDGSYEDWGVDELIVEDSWKRQVGGA Homology
BLAST of MS000385 vs. NCBI nr
Match: XP_022141284.1 (DNA-directed RNA polymerases II, IV and V subunit 6A [Momordica charantia]) HSP 1 Score: 255.4 bits (651), Expect = 2.7e-64 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of MS000385 vs. NCBI nr
Match: XP_038896917.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Benincasa hispida]) HSP 1 Score: 251.1 bits (640), Expect = 5.1e-63 Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 0
BLAST of MS000385 vs. NCBI nr
Match: XP_022923151.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >XP_022984652.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_022984654.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_023551729.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita pepo subsp. pepo] >KAG6576740.1 DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014784.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 250.4 bits (638), Expect = 8.7e-63 Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 0
BLAST of MS000385 vs. NCBI nr
Match: KAG6574158.1 (DNA-directed RNA polymerases II, IV and V subunit 6A, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 248.1 bits (632), Expect = 4.3e-62 Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 0
BLAST of MS000385 vs. NCBI nr
Match: XP_022944842.1 (DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita moschata] >XP_022968530.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita maxima] >XP_023541080.1 DNA-directed RNA polymerases II, IV and V subunit 6A-like [Cucurbita pepo subsp. pepo] >KAG7013212.1 DNA-directed RNA polymerases II, IV and V subunit 6A [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 248.1 bits (632), Expect = 4.3e-62 Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 0
BLAST of MS000385 vs. ExPASy Swiss-Prot
Match: Q9FJ98 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Arabidopsis thaliana OX=3702 GN=NRPB6A PE=1 SV=1) HSP 1 Score: 217.6 bits (553), Expect = 8.2e-56 Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0
BLAST of MS000385 vs. ExPASy Swiss-Prot
Match: Q9SJ96 (DNA-directed RNA polymerases II and V subunit 6B OS=Arabidopsis thaliana OX=3702 GN=NRPB6B PE=1 SV=1) HSP 1 Score: 209.1 bits (531), Expect = 2.9e-53 Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 0
BLAST of MS000385 vs. ExPASy Swiss-Prot
Match: Q32PE0 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Bos taurus OX=9913 GN=POLR2F PE=1 SV=1) HSP 1 Score: 124.8 bits (312), Expect = 7.3e-28 Identity = 70/109 (64.22%), Postives = 82/109 (75.23%), Query Frame = 0
BLAST of MS000385 vs. ExPASy Swiss-Prot
Match: P61219 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Mus musculus OX=10090 GN=Polr2f PE=2 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 2.1e-27 Identity = 72/120 (60.00%), Postives = 86/120 (71.67%), Query Frame = 0
BLAST of MS000385 vs. ExPASy Swiss-Prot
Match: O88828 (DNA-directed RNA polymerases I, II, and III subunit RPABC2 OS=Rattus norvegicus OX=10116 GN=Polr2f PE=1 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 2.1e-27 Identity = 72/120 (60.00%), Postives = 86/120 (71.67%), Query Frame = 0
BLAST of MS000385 vs. ExPASy TrEMBL
Match: A0A6J1CI61 (DNA-directed RNA polymerases II, IV and V subunit 6A OS=Momordica charantia OX=3673 GN=LOC111011721 PE=3 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 1.3e-64 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 0
BLAST of MS000385 vs. ExPASy TrEMBL
Match: A0A6J1J2R7 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111482872 PE=3 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 4.2e-63 Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 0
BLAST of MS000385 vs. ExPASy TrEMBL
Match: A0A6J1E614 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita moschata OX=3662 GN=LOC111430903 PE=3 SV=1) HSP 1 Score: 250.4 bits (638), Expect = 4.2e-63 Identity = 128/131 (97.71%), Postives = 130/131 (99.24%), Query Frame = 0
BLAST of MS000385 vs. ExPASy TrEMBL
Match: A0A6J1HXF2 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita maxima OX=3661 GN=LOC111467735 PE=3 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62 Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 0
BLAST of MS000385 vs. ExPASy TrEMBL
Match: A0A6J1FZ93 (DNA-directed RNA polymerases II, IV and V subunit 6A-like OS=Cucurbita moschata OX=3662 GN=LOC111449252 PE=3 SV=1) HSP 1 Score: 248.1 bits (632), Expect = 2.1e-62 Identity = 127/131 (96.95%), Postives = 129/131 (98.47%), Query Frame = 0
BLAST of MS000385 vs. TAIR 10
Match: AT5G51940.1 (RNA polymerase Rpb6 ) HSP 1 Score: 217.6 bits (553), Expect = 5.8e-57 Identity = 110/130 (84.62%), Postives = 121/130 (93.08%), Query Frame = 0
BLAST of MS000385 vs. TAIR 10
Match: AT2G04630.1 (RNA polymerase Rpb6 ) HSP 1 Score: 209.1 bits (531), Expect = 2.1e-54 Identity = 108/130 (83.08%), Postives = 117/130 (90.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|